Typing tool
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Typing tool
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Complete norovirus genomes
| OM372483 | GII.2 | |
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| GII.P16 |
ORF1: 1..5049
ORF2: 5030..6658
ORF3: 6658..7437
LOCUS OM372483 7469 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS535 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372483
VERSION OM372483.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7469)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7469)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7469
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS535"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5049
/gene="ORF1"
CDS <1..5049
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP29352.1"
/translation="NDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDKPQKPPRPPT
PELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRE
NREAREPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPLSLYWRV
VYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFR
PYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDW
TFAGVVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIE
DAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKV
FDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDT
FKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQG
PTTTTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLRGVKTMEELKQAIRNVTIKRC
QIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAV
YSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNELETKEETPKLEDDEFIISSKDIK
EEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE
LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKG
KLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEA
FGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPL
AARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIAIG
VHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSS
NTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTI
INVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTGKLADQASKAN
LMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEM
KAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVR
FSAEPQLTQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALS
EVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLI
ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPI
QLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGD
RNLAPNFVNEDGVE"
mat_peptide <1..945
/gene="ORF1"
/product="p48"
mat_peptide 946..2043
/gene="ORF1"
/product="NTPase"
mat_peptide 2044..2574
/gene="ORF1"
/product="p22"
mat_peptide 2575..2973
/gene="ORF1"
/product="VPg"
mat_peptide 2974..3516
/gene="ORF1"
/product="Pro"
mat_peptide 3517..5046
/gene="ORF1"
/product="RdRp"
gene 5030..6658
/gene="ORF2"
CDS 5030..6658
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29353.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTINQPVKFT
SVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6658..7437
/gene="ORF3"
CDS 6658..7437
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29354.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRERGESQA"
ORIGIN
1 aacgacaaag aaaaatcttc aggtgaaggc ttattcacaa atatgtcttc caccttaaag
61 aaagccctcg gggctaggcc taaacagcct gccccgagag acaaaccaca aaagccccca
121 agaccaccaa ctcccgagtt ggtcaagagg ataccccccc ccccacctaa cggcgaagaa
181 gaagaagaac cagtcattag gtatgaggtc aagagtggga tctctggcct acccgagctc
241 acaacagtcc cccaaccgga cgtggccaac acagcattca gtgttccacc actgagcttg
301 agagaaaaca gggaggccag ggagccgcta acaggggcaa tattagagat gtgggatgga
361 gagatatacc actatggcct gtacgtggag aaaggcttag tgttgggtgt gcacaaacca
421 cctgcagcca taagcatggc aagagtggag ctgacgccgt tgtcattgta ctggcgtgtg
481 gtgtacactc cccaatacct catctcccct gaaaccctca ggaggctcaa cggagaggcg
541 ttcccttaca ccgcctttga caacaactgc tatgcttttt gctgctgggt gttagacctc
601 aatgactcat ggcttagcag gaggatgata caaagaacaa cgggcttctt cagaccttac
661 caagagtgga acagaaaacc cctgcctacc atggatgact ccaaaattaa gaaggtggcg
721 aatatattcc tatgttcatt gtccacatta ttcaccagac ccataaaaga cctcatagga
781 aaaattaaac cattgaacat attgaatatc ctggcaacgt gtgactggac ttttgccgga
841 gtagtggagt ctctgatatt atttgctgaa ctcttcggag ttttctggac acccccagat
901 gtgtctgcta tgatcgctcc cttactcggg gactacgagt tgcaagggcc agaagacctc
961 gccgttgaac ttgtgcccgt ggtaatgggg gggattggtt tggtgttggg attcaccaaa
1021 gagaaaattg gcaaaatgtt gtcctcagca gcatcaacac tcagggcttg caaagacctt
1081 ggtgcctatg gcttagagat actcaaattg gtcatgaagt ggttcttccc aaagaaagag
1141 gaggccaatg agctagctat ggtgagggcc atagaggatg ctgtattaga ccttgaggca
1201 atagaaaata accacatgac aaccctgttg aaagacaaag acagcttagc aacatacatg
1261 aaaacactgg acatggagga ggagaaagcc aggaggttgt ccacaaaatc tgcatcccct
1321 gacatagttg ggacaatcaa cgccctgctg gctcgaatag cagcggccag gtcattagtc
1381 cacagggcca aggaagagct atctagtagg ataaggccag tagttgtcat gatatctggc
1441 aagccaggaa taggcaaaac tcatctggcc agggaggtgg caagaaaggt ggcatccact
1501 ctcacaggag atcaaagagt cggactcata ccacgaaacg gtgtggacca ttgggatgca
1561 tacaaaggtg agagagtcgt gctgtgggac gactatggca tgagtaaccc tattcatgat
1621 gctcttcgca tacaagaatt ggctgatacg tgtcccctta ccttaaattg tgacagaatt
1681 gaaaataagg gaaaagtttt tgacagtgaa gtcataataa tcacaacaaa ccttgccaat
1741 ccagccccac ttgattatgt caactttgag gcctgttcca ggagaattga tttcttggtg
1801 tacgctgagg caccagaagt agaaaaggca aaacgggact ttcctggtca gccagatatg
1861 tggaaggaca ccttcaagcc ggacttttca cacatcaagc tacagcttgc accccagggc
1921 ggctttgaca agaatggcaa caccccacat gggaaaggag tgatgaagac cctcactacc
1981 ggttctctga ttgcccgtgc atcaggccta ctgcatgaga ggatggatga atttgaactt
2041 caaggcccca caaccaccac ctttaatttc gaccgaaaca gaatcacggc attcagacaa
2101 ttggctgcag aaaacaagta tggattggtg gataccatga aagttggcaa tcaattaaga
2161 ggagtgaaaa ccatggaaga actcaaacaa gcaatcagga atgtgaccat caagaggtgc
2221 cagatcatct acggtggttc cacgtatgac cttgaatctg atggcaaggg caaagttttg
2281 gtggaaaagg tcaagaacac ctctgtacag actaataacg agttggctgg ggccctgcac
2341 catcttaaac atgcccgaat caggtactat gtcaaatgtg tgcaagaagc agtctattcc
2401 atcatacaaa ttgccggcgc tgcgtttgtc accacgcgca tcgcacgccg catgaacata
2461 caagaactct ggtcgaagcc acaactagat caaaatgaat tagagactaa ggaagagacc
2521 cccaagttag aagatgacga gttcatcata tcttctaagg acatcaagga ggaaggaaag
2581 aagggcaaaa acaaaactgg ccgtggcaag aaacacactg cattctccag caagggcttg
2641 agcgatgagg agtatgacga gtacaagaga ataagagaag agagaaatgg gaagtactct
2701 atagaggagt atcttcaaga cagagacagg tactatgagg agctcgccat tgccaaggcc
2761 acggaagaag acttctgtga agaggaggag atcaaaatcc gtcagagaat tttccgtccc
2821 accaggaaac aaagaaagga agagagggcc acattagggc tagtaacagg ttcagaaatc
2881 agaaaaagaa accctgatga cttcaaaccc aaagggaagt tgtgggccga tgacaacagg
2941 agtgttgact acaatgagaa actggacttt gaggcccccc caagcatatg gtctaggatt
3001 gtgagctttg gctctggctg gggcttctgg gtgtcaccaa gcctttttat aacatcaact
3061 catgtaatcc ccgcaggcat aacagaagca tttggagttc ccatcaaaca aattcagatc
3121 cacaaatcag gcgaattttg ccgattcaga ttcccaaaac caattagacc agatgtgaca
3181 ggaatgatct tggaagaagg tgcgcctgag ggcaccgtgg caactgtgct catcaaacgc
3241 cccaccgggg agctcatgcc tcttgcagcc agaatgggaa cacacgcaac catgaaaatt
3301 caaggccgca tggttggcgg acagatgggt atgttgctca ctggatcaaa tgctaaagga
3361 atggacttgg gaacaactcc tggtgactgt ggctgtcctt acatctataa aaggggcaat
3421 gactatatag ccattggggt gcacactgca gcagcccgtg gtggaaacac tgtcatctgt
3481 gccacacagg gaagtgaggg tgaggcaact cttgagggtg gagatgacaa aggaacatac
3541 tgtggggcac ccattctagg ccctgggggt gcaccaaaat tgagcaccaa aaccaaattt
3601 tggaggtcat cgaacacgcc ccttccacca gggacatatg agcctgccta cctcggtggc
3661 cgtgatccgc gtgttaaggg tgggccttcc ctgcagcagg tgatgagaga ccagttgaag
3721 ccattcactg aacccagggg caaacctcca agaccaagtg tattggaagc agccaaacaa
3781 accatcatca atgtcctcga acaaaccctg gaccctccac aaaaatggac atacgcacag
3841 gcgtgcgcct cacttgacaa aaccacctcc agtgggcacc cccatcacgt ccgaaagaat
3901 gaattctgga atggtgagac cttcactggt aaactggcag accaagcatc aaaagcaaac
3961 ctaatgtttg aggaagggaa acacatgaca ccagtgtaca cagcagcact caaggacgag
4021 ctagtcaaga ctgagaaaat ttatggaaag atcaagaaga gactgctctg gggctctgac
4081 ttgtccacca tgatccggtg cgctaggtca tttggtgggc ttatggacga gatgaaggca
4141 cactgcatat cactcccagt ccgagttggc atgaatatga atgaagatgg cccaataata
4201 tttgagaaac attccagata caaatatcat tatgatgcag actactctcg ttgggattca
4261 acacaacaga gggcagttct agcagcagcc ttggaaatca tggtcagatt ctctgcagaa
4321 ccacaattga cacaaatagt cgctgaggat ctgctggccc ctagtgtagt agatgtagga
4381 gactttaaaa tcacaataaa tgaagggctc ccttctggtg tgccatgcac ttctcaatgg
4441 aactccatcg cacactggct gctaactctc tgtgccttgt ctgaagttac caaactatcc
4501 cctgacatta tacaggcaaa ttccatgttc tcattttacg gtgatgacga gattgtcagt
4561 accgacataa aattggaccc tgaacagtta accgccaaat tgaaggagta cggcctgaaa
4621 ccaacccgcc cagacaaaac cgagggaccc ctgattatca gtgaagattt gaacggtctc
4681 actttcctcc gaaggacggt gactcgtgac ccagctggct ggtttggaaa actggaccaa
4741 agctcaattt tgaggcagat gtactggact agaggaccaa atcatgagga ccccaatgag
4801 acaatgatac cccattccca aagacccata cagctcatgg cactgcttgg tgaagcctct
4861 cttcacggac cctctttcta cagtaaaatc agtaaattgg tcataactga actcaaagaa
4921 ggtgggatgg acttttacgt gccaaggcag gaacccatgt tcaggtggat gaggttttct
4981 gacttgagca cgtgggaggg cgatcgcaat ctggctccca attttgtgaa tgaagatggc
5041 gtcgaatgac gccgctccat ctactgatgg tgcagccggc ctcgtgccag aaagtaacaa
5101 tgaggtcatg gctcttgaac ccgtggctgg tgccgccttg gcagccccgg tcaccggtca
5161 aacaaatatt atagaccctt ggattagagc aaactttgtc caggccccca atggtgaatt
5221 tacagtctct ccccgaaatg cccctggtga agtgctattg aatctagagt tgggtccaga
5281 attaaatcct tatctggcac atttagcaag aatgtacaat gggtatgccg gtgggatgga
5341 ggtgcaggtc atgttggctg ggaacgcgtt cacagccggc aagttggtct tcgccgccgt
5401 gccaccccac ttcccggttg aaaaccttag cccacagcaa atcaccatgt tccctcatgt
5461 gatcatagat gtaagaacct tggaacctgt tttattacca ctccctgatg ttaggaataa
5521 cttcttccat tataaccaga aagatgatcc caagatgaga attgtggcta tgctttatac
5581 ccccctcagg tctaatggtt caggtgatga tgtgtttaca gtctcctgta gggtgttgac
5641 tagaccttcc cctgactttg acttcacata cctggtgcca ccaacagtgg agtctaaaac
5701 aaagccattc accctcccaa tcctcacact tggggaactt tccaattcta ggttcccagt
5761 gtccatagac cagatgtaca ccagccctaa tgaaattata tcagtgcagt gtcaaaatgg
5821 taggtgcaca ttggacgggg agctccaagg gacaacgcaa ctccaagtca gtggcatttg
5881 tgctttcaaa ggtgaagtga ccgcccactt gcatgacaat gatcacctat ataatgtcac
5941 catcacaaac ttgaatgggt ccccttttga tccctccgag gatatccctg cccctttagg
6001 tgtgcctgac ttccagggaa gggtttttgg tatcatctcc caaagagata aacacaatag
6061 tcctgggcat aatgaaccag caaacagggg acacgacgct gtggtcccta cttacacagc
6121 acagtacact ccaaaactag gacaaattca aattggcaca tggcaaactg acgaccttac
6181 aatcaaccag ccagtcaaat tcacctcagt tggactcaat gacactgaac actttaacca
6241 atgggtggtc cctaggtatg ctggtgctct aaaccttaat acaaaccttg ccccttctgt
6301 tgctccagta tttccaggag agcgcctgct cttcttcaga tcatacatcc ccctcaaggg
6361 cggctatgga aacccagcca ttgattgcct actaccacaa gagtgggtac agcacttcta
6421 tcaggaagca gccccttcaa tgagtgaggt ggccctcgtc agatacatca acccggacac
6481 tggtcgagca ctgtttgagg ccaagctcca cagagctggt ttcatgacag tctcgagcaa
6541 caccagtgcc ccggtggttg tgcctgccaa tgggtacttc agatttgatt cttgggtgaa
6601 ccaattttac tctctcgccc ccatgggaac tgggaatggg cgtagaaggg ttcaataatg
6661 gctggagctt ttgtagctgg tcttgcaggg gacgtgctca gcaatgggct tagttcatta
6721 atcaacgcag gtgctaatgc aataaatcag agggcagaat ttgattttaa tcaaaaattg
6781 cagcaaaatt cttttaatca tgataaggag atgttgcagg ctcagattca ggcaactaag
6841 cagctgcagg cagacatgat ggctataaaa caaggggtct tgaccgctgg cggcttttcc
6901 cctgctgatg cagccagagg tgctgtgaac gcgcccatga cacaggcgct ggattggaat
6961 ggcacaaggt actgggcacc aaactccatg aggaccacat cttattctgg aaaattcaca
7021 tcaaccgccc cagtgaggca ggctgacttc cagcacaccc aaagccggcc ttcgagtggc
7081 tcctctgtgt cttcctttgc cactcagtct tcaaggccaa ctctaaccac aaccactggt
7141 tcctcacatg gcacagcctc atcaaattca actcgcagca caagcctctc ccaatcaacg
7201 gtctccagag ctacatctag gactggtgag tgggttagag atcaaaatag aaatttggaa
7261 ccctacatgc atggtgcctt acagacagcc tttgtcaccc caccttccag cagggcatct
7321 gacgggacag tctcaaccgt ccctaaaggt gttttggact cctggacacc tgcgttcaac
7381 acccgcaggc agccgctttt tgcacacctc cgtgagaggg gggagtcaca agcttagtga
7441 aaaggtgaaa atttatttag gatcaattg
//