Typing tool
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Typing tool
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Complete norovirus genomes
| OM372482 | GII.2 | |
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| GII.P16 |
ORF1: 1..5093
ORF2: 5074..6702
ORF3: 6702..7481
LOCUS OM372482 7509 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS181 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372482
VERSION OM372482.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7509)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS181"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5093
/gene="ORF1"
CDS <1..5093
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP29349.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKIKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPITQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHVTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..989
/gene="ORF1"
/product="p48"
mat_peptide 990..2087
/gene="ORF1"
/product="NTPase"
mat_peptide 2088..2618
/gene="ORF1"
/product="p22"
mat_peptide 2619..3017
/gene="ORF1"
/product="VPg"
mat_peptide 3018..3560
/gene="ORF1"
/product="Pro"
mat_peptide 3561..5090
/gene="ORF1"
/product="RdRp"
gene 5074..6702
/gene="ORF2"
CDS 5074..6702
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29350.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVSGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6702..7481
/gene="ORF3"
CDS 6702..7481
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29351.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHSTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RTSDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 tggcgtctaa cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaagaaaaat
61 cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcca
121 ggcccaaaca gcctgccccg agagacaaac cacaaaagcc cccaagacca ccaactcccg
181 agttggtcaa gaggataccc cctcctccac ctaacggcga agaagaagaa gaaccagtca
241 ttaggtatga ggtcaagagt gggatctctg gcctgcccga gctcacaaca gtcccccaac
301 cggacgtggc caacacagca ttcagtgttc caccactgag cttgagagaa aacagggagg
361 ccaaggagcc gctaacaggg gcaatattag agatgtggga tggagagata taccactatg
421 gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca
481 tggcaagagt ggagctggca ccgctgtcat tgtactggcg tgtggtgtac actccccaat
541 acctcatctc ccctgaaacc ctcaggaggc tcaacggaga ggcattccct tacaccgcct
601 ttgacaacaa ctgctatgcc ttctgctgct gggtgttaga cctcaatgac tcatggctta
661 gcaggaggat gatacagaga acaacgggct tcttcagacc ttaccaagag tggaacagaa
721 aacccctgcc caccatggat gactccaaaa ttaagaaggt agcaaatata ttcctatgtt
781 cattgtccac attattcacc agacccataa aagacctcat aggaaaaatt aaaccattga
841 acatattgaa tatcctggca acgtgtgact ggacctttgc cggaatagtg gagtctctaa
901 tattatttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg
961 ctcccttact cggggactac gagttgcaag ggccagaaga cctcgccgtt gaacttgtgc
1021 ctgtggtaat gggagggatt ggtttggtgt tgggattcac caaagagaaa attggcaaaa
1081 tgttgtcctc agctgcatca acactcaggg cttgcaaaga tcttggtgcc tatggcttag
1141 agatactcaa actggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag
1201 ctatggtgag ggccatagag gatgctgtat tagaccttga ggcaatagaa aataaccaca
1261 tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg
1321 aggaggagaa agccaggagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa
1381 tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag
1441 agctatctag taggataagg ccagtagttg ttatgatatc tggcaagcca ggaataggca
1501 aaactcatct ggctagggag gtggcaagaa aggtggcatc cactctcaca ggagatcaaa
1561 gagtcggact cataccacga aacggtgtgg accattggga tgcatacaaa ggtgagagag
1621 tcgtgctgtg ggacgactat ggcatgagta accctattca tgatgctctt cgcatacaag
1681 aattggctga tacgtgtccc cttaccttaa attgtgacag aattgaaaat aagggaaaag
1741 tttttgacag tgaagtcata ataattacaa caaaccttgc caatccagcc ccacttgatt
1801 atgtcaactt tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag
1861 aagtagaaaa ggcaaaacgg gactttcctg gtcaaccaga tatgtggaag gacgccttca
1921 agccggactt ttcacacatc aagctacagc ttgcacccca gggcggcttt gacaagaatg
1981 gcaacacccc acatgggaaa ggggtgatga agaccctcac taccggttct ctgattgccc
2041 gtgcatcagg cctactgcat gagaggatgg atgaatttga actccaaggc cccacaatca
2101 ccacctttaa tttcgaccga aacaggatca cggcattcag acaattggct gcagaaaaca
2161 agtatggatt ggtggatacc atgaaagttg gcaatcaatt aaaaggagtg aaaaccatgg
2221 aagaactcaa acaagcaatt aggaatgtga ccatcaagag gtgtcagatc atctacggtg
2281 gttccacgta tgaccttgaa tctgatggca agggcaaagt tttggtggaa aagatcaaga
2341 acacctctgt acagaccaat aacgagttgg ctggggccct gcaccatctc aaacatgccc
2401 gaatcaggta ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcata caaattgccg
2461 gcgctgcgtt tgtcaccacg cgcatcgcac gccgcatgaa catacaagaa ctctggtcga
2521 agccacaact agatcaaaat gaatcagaga ctaaggaaga ggcccccaag tcagaagatg
2581 acgagttcat catatcctct aaggacatca aggaggaagg aaagaagggc aaaaacaaaa
2641 ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat gaggagtatg
2701 acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc
2761 aagacagaga caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct
2821 gtgaagagga ggagatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa
2881 aggaagagag ggccacatta gggctagtaa caggttcaga aatcagaaaa agaaaccctg
2941 atgacttcaa acccaaaggg aagctgtggg ccgatgacaa caggagtgtt gactacaatg
3001 agaaactgga ctttgaggcc cccccaagca tatggtctag aattgtgagc tttggctctg
3061 gctggggctt ctgggtgtca ccaagccttt tcataacatc aactcatgta atccccgcag
3121 gcataacaga agcatttgga gtccccatca cacaaattca gatccacaaa tcaggcgaat
3181 tttgccgatt cagattccca aaaccaatca gaccagatgt gacaggaatg atcttggaag
3241 agggtgcgcc tgagggcacc gtggcaactg tgctcatcaa acgccccacc ggagagctca
3301 tgcctcttgc agccagaatg ggaacacacg caaccatgaa aattcaaggc cgcatggttg
3361 gcggacagat gggtatgttg ctcactggat caaatgctaa aggaatggac ttgggaacga
3421 ctcctggtga ctgtggctgt ccttacatct ataaaagggg caatgactat atagccattg
3481 gggtgcacac tgcagcagcc cgtggtggaa acactgtcat ctgcgccaca cagggaagtg
3541 agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc
3601 taggccctgg gggtgcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca
3661 cgcccctccc accagggaca tatgagcctg cctacctcgg tggccgtgat ccgcgtgtta
3721 agggtgggcc ttccctgcag caggtgatga gggaccagtt gaagccattc actgaaccca
3781 ggggcaaacc tccaagacca agtgtgttgg aagcagccaa acaaaccatc atcaatgtcc
3841 tcgaacaaac cctggaccct ccacaaaaat ggacatacgc acaggcgtgc gcctcacttg
3901 acaaaaccac ctccagcggg caccctcatc acgtccgaaa gaatgaattc tggaatggtg
3961 agaccttcac tggtaaacta gcagaccaag catcaaaagc aaacctaatg tttgaggaag
4021 ggaaacacgt gacaccagtg tacacggcag cactcaagga cgagctagtc aagactgaga
4081 aaatttatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc
4141 ggtgcgctag gtcatttggt gggcttatgg acgagatgaa ggcacactgc atatcactcc
4201 cagtccgagt tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca
4261 gatacaaata tcactatgat gcagactatt ctcgttggga ttcaacacaa cagagggcag
4321 ttctagcagc agccttggaa atcatggtca gattctctgc agaaccacaa ttggcacaaa
4381 tagtcgctga ggatctgctg gcccctagtg tagtagatgt aggagacttt aaaatcacaa
4441 taaatgaagg gctcccttct ggtgtgccat gcacttctca atggaactcc atcgcacact
4501 ggctgctaac tctctgcgcc ttgtctgaag tcaccaaact atcccctgac attatacagg
4561 caaattccat gttctcattt tacggtgatg acgagattgt cagtaccgac ataaaattgg
4621 accctgaaca gttaaccgcc aaattgaagg agtatggcct gaaaccaacc cgcccagaca
4681 aaaccgaggg acccctgatt atcagtgaag atttaaacgg tctcactttc ctccgaagaa
4741 cggtgactcg tgacccagct ggctggtttg gaaaattgga tcaaagctca attttgaggc
4801 agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccatt
4861 cccaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt
4921 tctacagtaa aatcagtaaa ttggtcataa ctgaactcaa agaaggtggg atggactttt
4981 acgtgccaag gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg
5041 agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgaa tgacgccgct
5101 ccatctactg atggtgcagc cggcctcgtg ccagaaagta acaatgaggt catggctctt
5161 gaacccgtgg ctggtgccgc cttggcagcc ccggtctccg gtcaaacaaa tattatagac
5221 ccttggatta gagcaaattt tgtccaggcc cccaatggtg aatttacagt ctctccccga
5281 aatgcccctg gtgaagtgct actgaatcta gagttgggtc cagaattaaa tccttatctg
5341 gcacatttag caagaatgta caatgggtat gccggtggga tggaggtgca ggtcatgttg
5401 gctgggaacg cgttcacagc cggcaagttg gtcttcgccg ccgtgccacc ccatttcccg
5461 gttgaaaacc ttagcccaca gcaaatcacc atgttccctc atgtgatcat agatgtgaga
5521 accttggaac ctgttttatt accactcccc gatgttagga ataacttctt ccattataac
5581 cagaaagatg atcccaagat gagaattgtg gctatgcttt atacccccct caggtctaat
5641 ggttcaggtg atgatgtgtt tacagtttcc tgtagagtgt tgactagacc ttcccctgac
5701 tttgacttca catacctggt gccaccaaca gtggagtcta aaacaaagcc attcaccctc
5761 ccaatcctca cacttgggga actttccaat tctaggttcc cagtgtccat agaccagatg
5821 tacaccagcc ctaatgaaat tatatcagtg cagtgtcaaa atggtaggtg cacactggac
5881 ggggagctcc aagggacaac acagctccaa gtcagtggca tttgtgcttt caaaggtgaa
5941 gtgaccgccc acttgcatga caatgatcac ctatataatg tcaccatcac aaacttgaat
6001 gggtcccctt ttgatccctc cgaggatatc cctgcccctt tgggtgtgcc tgacttccag
6061 ggaagggttt ttggtatcat ctcccaaaga gataaacaca atagtcctgg gcataatgaa
6121 ccagcaaaca ggggacacga cgctgtggtc cctacttaca cagcacagta cactccaaaa
6181 cttggacaaa ttcaaattgg cacatggcaa actgacgatc ttacagtcaa ccaaccagtc
6241 aaattcaccc cagttggact caatgacact gaacacttta accaatgggt ggtccctagg
6301 tatgctggcg ccctaaacct caatacaaac cttgcccctt ctgttgctcc agtatttcca
6361 ggagagcgcc tgctcttctt cagatcatac attcccctca agggcggtta tggaaaccca
6421 gccattgatt gcctactacc acaagagtgg gtgcagcact tctatcagga agcagcccct
6481 tcaatgagtg aggtggccct cgtcagatac atcaacccgg acactggtcg ggcactattt
6541 gaggccaagc tccacagagc tggtttcatg acagtctcga gcaacaccag tgccccggtg
6601 gttgtgcctg ccaacgggta cttcagattt gattcttggg tgaaccaatt ttattctctc
6661 gcccccatgg gaactgggaa tgggcgtaga agggttcagt aatggctgga gcttttgtag
6721 ctggtcttgc aggggacgtg ctcagcaatg ggcttagttc attaatcaat gcaggtgcta
6781 atgcaataaa tcagagggca gaatttgatt ttaatcaaaa attgcagcaa aattctttta
6841 atcatgataa ggagatgttg caggctcaga ttcaggcaac taagcagctg caggcagaca
6901 tgatggctat aaaacaaggg gtcttgaccg ctggcggctt ttcccctgct gatgcagcca
6961 gaggtgctgt gaacgcgccc atgacacagg cgctggattg gaatggcaca aggtattggg
7021 caccaaactc catgaggact acatcttatt ctggaaaatt cacatcaacc gccccagtga
7081 ggcaggctga cttccagcac acccaaagcc ggccttcgag tggctcctct gtgtcttcct
7141 ttgccactca gtcttcaagg ccaactctga ccacaaccac tggttcctca catagcacag
7201 cctcatcaaa ttcaactcgc agcacaagcc tctcccaatc aacggtctcc agagctacat
7261 ctaggactgg tgagtgggtt agagatcaaa atagaaattt ggaaccctac atgcatggtg
7321 ccttacagac agcctttgtc accccacctt ccagcaggac atctgacggg acagtctcaa
7381 ccgtccctaa aggtgttttg gactcctgga cacctgcgtt taacacccgc aggcagccgc
7441 tttttgcaca cctccgtaag aggggggagt cacaagctta gtgaaaaggt gaaaatttat
7501 ttaggatta
//