Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM372481 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS OM372481 7517 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS178 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372481
VERSION OM372481.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7517)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7517)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS178"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5093
/gene="ORF1"
CDS <1..5093
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP29346.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKP
KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..983
/gene="ORF1"
/product="p48"
mat_peptide 984..2081
/gene="ORF1"
/product="NTPase"
mat_peptide 2082..2618
/gene="ORF1"
/product="p22"
mat_peptide 2619..3017
/gene="ORF1"
/product="VPg"
mat_peptide 3018..3560
/gene="ORF1"
/product="Pro"
mat_peptide 3561..5090
/gene="ORF1"
/product="RdRp"
gene 5074..6696
/gene="ORF2"
CDS 5074..6696
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29347.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FDVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGGVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6696..7502
/gene="ORF3"
CDS 6696..7502
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29348.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIHKRGESRV"
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat
61 cttcaagtga cggtatgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc
121 ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca cccacaccag
181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt
241 acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga caaccggaag
301 aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg
361 agccattaac tggaacaatc attgaaatgt gggatggaga aatctaccat tacggcctgt
421 acgtggaacg aggtcttata cttggtgtgc acaagccacc agcagccatc agcctcgcca
481 aggtcgagct ggcaccgctc tctctgttct ggagacctgt atacaccccc cagtacctta
541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgata
601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctaagcagga
661 gaatgattca gagaacaaca ggcttcttca ggccgtacca ggattggaac aggaaacccc
721 tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt
781 cttcactatt cactaggccc attaaggaca taatagggaa gttgaaaccc ctcaacatcc
841 ttaatattct ggctacatgt gattggacct tcgcaggcat agtggaatcc ttaatactct
901 tagcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct
961 tgctaggtga ttatgaactg caaggacccg aggaccttgc agtggaactg gtcccaatag
1021 tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaatcgga aagatgctgt
1081 catccgctgc atccactttg agagcttgta aagaccttgg tgcatacgga ctggaaatct
1141 taaaattggt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg
1201 tgagatccat cgaggatgca gtactagacc tcgaggcaat tgaaaacaac cacatgacca
1261 ccctgctcaa agacaaagac agcttgacaa cctatatgag aacccttgac cttgaggagg
1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acaatcaact
1381 ctcttctggc aaggatcgct gctgcacgct ccctagtgca tcgagcgaaa gaagagctct
1441 ccagcaggcc gagacctgtc gttgtaatga tatcgggaag accaggtata gggaaaactc
1501 accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg
1561 gccttatccc acgcaatggt gtcgatcact gggacgcata caagggcgaa agagttgtcc
1621 tatgggacga ctatggaatg agcaacccca tccatgatgc cctcagattg caggagcttg
1681 ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaggga aaagtctttg
1741 acagtgatgc cataattatc accaccaacc tggccaaccc agcaccactg gattatgtca
1801 actttgaagc gtgctcgaga cgcattgatt tcctcgtgta cgcagaagcc cctgaggtgg
1861 agaaggcgaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg
1921 acttctcaca cataaaacta tcgttggctc cacagggggg ttttgacaag aacggcaaca
1981 ccccgcacgg aaagggaatc atgaagaccc tcaccactgg ctctctcatc gcccgagcat
2041 cagggttact ccatgagagg ctagatgaat atgaattgca aggcccagcc ctcactactt
2101 tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg
2161 ggctgatgga cacaatgaga gttgggaaac agctcaagga tgtcaagact atgtcagacc
2221 tcaaacaagc actcaagaac atcgcgatca agaagtgcca gatagtgtac aatggtggca
2281 cctacacact tgaggctgat ggcaagggca gtgtgaaggt tgacaaagtg caaagtgcca
2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaagatgc gctagaatca
2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg
2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccaagccac
2521 aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc aaagatgatg
2581 aagagtttgt cgtttcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt
2641 ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat gaggagtacg
2701 atgagtacaa aagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc
2761 aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa gaggacttct
2821 gtgaagaaga agaggccaaa atccggcaga ggattttcag accaacaagg aaacaacgca
2881 aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag agaaacccag
2941 aagatttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt gactacaatg
3001 agaaactcaa ctttgaagcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag
3061 gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccagg
3121 gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaag tcaggtgagt
3181 tctgtcgact gagattccca aagccaatca gaactgatgt gacgggcatg attctagaag
3241 aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca
3301 tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg
3361 gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagcatggac ctaggcacaa
3421 caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac gtggttatag
3481 gggtccatac ggccgctgcc cgcggaggaa acactgtcat atgtgccacc cagggaagtg
3541 agggagaggc cacactcgaa ggaggtgata gtaaggggac atactgtggc gcaccaatct
3601 tgggcccagg gagcgctccg aagctcagca ccaagactaa gttttggaga tcatccacaa
3661 caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac cctagagtca
3721 aaggtggccc ttcattgcaa caagttatga gagaccagct gaagccattc acagaaccca
3781 gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaagaccatc atcaatgtcc
3841 ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg
3901 acaagaccac ctccagtggc cacccgcacc acatgcggaa aaacgactgt tggaatgggg
3961 agtccttcac aggaaaattg gctgaccaag cctccaaggc caacctaatg tttgaagagg
4021 gaaagaacat gaccccagtc tacacaggtg cacttaaaga tgagttggtg aagaccgata
4081 aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg accatgatac
4141 ggtgcgcccg agcttttgga ggcctcatgg atgaactcaa ggcacactgt gtcacgctcc
4201 ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag aagcactcca
4261 gatatagata tcactatgat gctgactatt cccgatggga ctcaacacaa caaagggatg
4321 tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac ctggcccaga
4381 tagttgcaga agacctcctc tcccctagcg tgatggatgt gggtgacttt caaatatcaa
4441 taagtgaggg cctcccctct ggggtgcctt gtacctccca gtggaattcc atcgcccact
4501 ggctcctcac tctgtgtgca ctctctgaag tcacggacct gtcccctgat atcattcagg
4561 ccaactccct tttctccttc tatggtgatg atgagattgt aagcacagac ataaagttgg
4621 acccagagag gctgacagca aaactcaagg agtacgggct gaaaccaacc cgccccgaca
4681 aaactgaagg accccttgtt atctctgaag acctggatgg tctaacattc ctccggagaa
4741 ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca attcttaggc
4801 aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg ataccacact
4861 cccaaagacc catacaattg atgtctttgc tgggcgaggc tgcactccac ggcccggcat
4921 tctacagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc atggattttt
4981 atgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg
5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg
5161 gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt gtcccctaga
5281 aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa tccctactta
5341 tctcatttgg ccagaatgta caatggttat gcaggtggtt ttgacgtgca ggtaattctc
5401 gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca
5461 actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt agatgttagg
5521 caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattataat
5581 caatcaaatg accccactat taagttgata gcaatgttgt atacaccact tagggctaat
5641 aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgaggcc atcccccgat
5701 tttgacttca tatttctagt gccacccaca gttgagtcaa gaactaagcc attctctgtc
5761 ccaattttaa ctgttgagga aatgaccaat tcaagattcc ccattccttt ggaaaagttg
5821 ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggtagatg cacgactgat
5881 ggcgtgctcc taggcaccac ccaactgtct cctgttaaca tctgcacctt cagaggagat
5941 gtcacccata tcacaggtag ccataactac acaatgaatt tggcttctca aaattggagc
6001 aattacgacc caacggaaga aattccagcc cctctaggga ctccagactt tgtggggaag
6061 attcaaggca tgctcaccca aaccacaagg acagatggct caacacgcgg ccacaaagcc
6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtggagttca atttgaaact
6181 gacacaaaca atgattttga agctaaccaa aacacaaagt tcaccccagt tggtgtcatc
6241 caagatggtg gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca
6301 ggcaggaaca ctcctaatgt gcatctggcc cccgctgtag cccccacttt tccgggtgag
6361 caactcctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gattgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa
6481 tccgatgtgg ctctgctaag gtttgtgaat ccagacacag gtagggtttt gtttgaatgt
6541 aagcttcata aatcaggcta tgttacagtg gctcacactg gccagcatga tttggttatc
6601 ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac gcttgccccc
6661 atgggaaatg gagcggggcg taggcgtgca ctataatggc tggagctttc tttgctggat
6721 tggcatctga tgtccttggc tctgggcttg gttcccttat caacgctggg gctggggcca
6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc tttcaattta
6841 gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa gcacaaattg
6901 aggctaccaa aaagttacaa caggaaatga tgaaagttaa acaggcaatg ctcttagagg
6961 gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccctatg acaaaagctt
7021 tggattggag cgggacaagg tactgggctc ctgatgctag gactacaaca tacaatgcag
7081 gccgcttttc caccccccaa ccatcggggg cgctgccagg aagagctaat cttagggatg
7141 ctgtccctgc tcggggttcc tctagtaggt cttctaattc ctctactgct acttctgtgt
7201 actcaaatca aactatttca acgagacttg gttctacagc tggttctggt accagtgtct
7261 cgagcttccc gtcaactgca aggactagga gctgggttga ggatcaaagt aggaatttgt
7321 caccttttat gaggggggcc cacaacatat cgtttgtcac cccaccatct agcagatcct
7381 ctagccaagg cacagtctca accgtgccta aagagatttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcca ctcttcgctc acattcataa gcgaggggag tcacgggtgt
7501 aatgtgaaaa gacaaaa
//