Typing tool
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Typing tool
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Complete norovirus genomes
| OM372480 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5080
ORF2: 5061..6683
ORF3: 6683..7489
LOCUS OM372480 7512 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS177 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372480
VERSION OM372480.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7512)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS177"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5080
/gene="ORF1"
CDS <1..5080
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29343.1"
/translation="ASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKE
IPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFS
VPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELA
PLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMI
QRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNIL
NILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVP
IVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANE
LAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDI
VGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAAS
LTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPG
QPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHER
LDEYELQGPALTTYNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQAL
KNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYY
VKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDE
EFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRK
RNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITST
HVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLI
KRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKL
STKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRP
NVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTG
KLADQASKANLMFEEGKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCA
RAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDV
LAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPT
RPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFE
TMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..970
/gene="ORF1"
/product="p48"
mat_peptide 971..2068
/gene="ORF1"
/product="NTPase"
mat_peptide 2069..2605
/gene="ORF1"
/product="p22"
mat_peptide 2606..3004
/gene="ORF1"
/product="VPg"
mat_peptide 3005..3547
/gene="ORF1"
/product="Pro"
mat_peptide 3548..5077
/gene="ORF1"
/product="RdRp"
gene 5061..6683
/gene="ORF2"
CDS 5061..6683
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29344.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6683..7489
/gene="ORF3"
CDS 6683..7489
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29345.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgcttccgct gccgctgttg ccaacagcaa caacgacatc gcaaaatctt caagtgacgg
61 tgtgttttct aacatggctg tcacttttaa gcgggccctc ggggcgcggc ctaaacagcc
121 gcccccgaag gaaataccac ccagaccccc gcgaccaccc acaccagaat tggtcaaaaa
181 gatccctcct cccccaccca acggggagga tgaactagtg gtctcttata acgccaaaga
241 tggcgtttcc ggactgcctg agctcaccac tgtcagacaa ccggaagaaa ccaacacggc
301 gttcagtgtc ccccctctca accaaaggga gagcagggac gccaaggagc cactaactgg
361 aacaatcatt gaaatgtggg atggagaaat ctaccattac ggcctgtacg tggaacgagg
421 tcttatactt ggtgtgcaca agccaccggc agccatcagc ctcgctaagg tcgagctggc
481 accgctctct ttgttctgga gacctgtata caccccccaa taccttatct ctccagacac
541 tcttaggaga ttacatggag agtcattccc ctacactgca tttgacaaca attgctacgc
601 cttttgttgt tgggtattag acctaaacga ctcatggcta agcaggagaa tgattcagag
661 aacaacaggc ttcttcaggc cgtaccagga ttggaacagg aaaccccttc ccactatgga
721 tgattccaaa ttaaagaagg tagccaacat attcttgtgc actttgtctt cactattcac
781 caggcctatt aaggacataa tagggaagtt gaaacctctc aacatcctta atattctggc
841 tacatgtgat tggaccttcg caggcatagt ggaatcctta atactcttgg cagaactctt
901 tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttgc taggtgatta
961 tgaactgcaa ggacccgagg accttgcagt ggaactggtc ccaatagtga tgggggggat
1021 aggtttggtg ctaggattta ccaaagagaa gatcggaaag atgctgtcat ccgctgcatc
1081 cactttaaga gcttgtaaag accttggtgc atacggactg gaaatcttaa aattggtcat
1141 gaagtggttc ttcccaaaga aagaggaagc aaatgaactg gctatggtga gatccatcga
1201 ggatgcagta ctagacctcg aggcaattga aaacaaccac atgaccaccc tgctcaaaga
1261 caaagacagc ttgacaacct acatgaggac ccttgatctt gaggaggaga aagccagaaa
1321 actctcaacc aaatctgctt cacccgatat tgtgggcaca atcaactctc ttctggcaag
1381 aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa gagctttcca gcaggccgag
1441 acctgtcgtt gtaatgatat cgggaagacc agggataggg aaaactcacc ttgccaggga
1501 gctggccaag aagatcgcgg cctccctcac aggggaccag cgtgtgggcc tcatcccacg
1561 caatggtgtc gaccactggg acgcatacaa gggcgaaagg gttgtcctat gggacgacta
1621 tggaatgagc aaccccatcc atgatgccct taggttgcag gagcttgctg acacttgccc
1681 cctcacgcta aactgtgaca gaattgagaa caaaggaaaa gtctttgaca gtgatgccat
1741 aattatcacc accaacctgg ccaacccagc accactggat tatgtcaact ttgaagcgtg
1801 ctcgagacgc attgatttcc tcgtgtacgc agaagcccct gaggtggaga aggcaaagcg
1861 cgacttccca ggtcaacctg acatgtggaa gaacgctttc agtcctgact tctcacacat
1921 aaaactgtca ttggctccac agggtggttt tgacaagaac ggcaacaccc cgcatggaaa
1981 aggggtcatg aagaccctca ccactggctc cctcatcgcc cgagcatcgg ggttactcca
2041 tgagaggcta gatgaatatg aattgcaagg cccagccctc accacttaca actttgaccg
2101 caacaagata cttgctttta gacagcttgc tgctgaaaac aagtatgggc tgatggacac
2161 aatgagagtt ggaaagcagc tcaaggatgt caagactatg tcagacctca aacaagcact
2221 caagaacatc gcaatcaaga agtgccagat agtgtacaat ggtggcacct acacacttga
2281 ggctgatggc aagggcagtg tgaaagttga caaagtgcaa agtgccactg tgcagaccaa
2341 caatgaacta gccggtgccc tacaccacct aagatgcgct agaatcagat actatgttaa
2401 gtgcgtccag gaggcactgt attccatcat ccaaatcgct ggggctgcat tcgtcaccac
2461 gcgcatcgct aagcgcatga atatacagaa tctctggtcc aagccacagg tggaagacac
2521 agaagagatg gccaacaaag atggttgcct aaaacccaaa gatgatgaag agtttgtcgt
2581 ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag aacaagtccg gccgtggcaa
2641 gaagcacaca gccttttcaa gtaaagggct cagtgatgag gagtacgatg agtacaagag
2701 aatcagagaa gaaaggaatg gtaagtactc catagaagag taccttcagg acagagacag
2761 gtactacgag gaggtggcca ttgccagggc aaccgaagag gacttctgtg aagaagaaga
2821 ggccaaaatc cggcagagga ttttcagacc aacaaggaaa caacgtaaag aagagagggc
2881 ttctctcggc ttggtcacag gctctgaaat caggaagaga aacccagaag acttcaaacc
2941 caagggaaag ctgtgggctg atgacgacag aagtgttgac tacaatgaga aactcaactt
3001 tgaggcccca ccaagcatct ggtcgcggat agtcaacttt ggttcaggct ggggcttctg
3061 ggtctccccc agtctgttta taacatcaac ccatgtcata ccccaaggtg caaaggagtt
3121 cttcggagtc cctatcaagc aaatccagat acacaagtca ggtgaattct gccgattgag
3181 attcccaaag ccaatcagaa ccgatgtgac gggcatgatt ctagaagaag gtgcgcccga
3241 ggggaccgtg gccacactgc tcatcaagag accaactgga gagctcatgc ctctggcagc
3301 cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc acagttggag ggcaaatggg
3361 tatgctcctg acaggatcca acgccaagag tatggaccta ggcacaacac caggcgactg
3421 cggctgcccc tacatctaca agagggggaa tgactacgtg gtcatagggg tccatacggc
3481 tgctgcccgt ggaggaaaca ctgtcatatg tgccacccag ggaagtgagg gagaggccac
3541 acttgaagga ggtgacagta aggggacata ctgtggcgcg ccaatcttgg gcccagggag
3601 cgctccgaag ctcagcacca agactaagtt ttggagatca tccacaacac cactcccacc
3661 tggcacctac gaaccagcct acctcggtgg caaagaccct agagtcaaag gtggcccttc
3721 attgcaacaa gttatgaggg accagctgaa gccattcaca gaacccagag gcaaaccacc
3781 aagaccaaat gtgttggaag ctgccaagaa aaccatcatc aatgtccttg agcaaacaat
3841 tgatccaccc caaaaatggt catttgcgca agcttgcgca tcccttgaca aaaccacctc
3901 cagcggccat ccgcaccaca tgcggaaaaa cgactgttgg aatggggagt ccttcacagg
3961 aaagttggct gaccaagcct ccaaggccaa cctaatgttt gaagagggaa agaacatgac
4021 tccaatctac acaggtgcac ttaaagatga gttggtaaag accgataaag tttatggtaa
4081 ggtcaagaag aggcttctat ggggttcaga tctggcgacc atgatacggt gcgcccgagc
4141 ttttggaggc ctcatggatg aactcaaggc acactgtgtc acactccctg tcagagttgg
4201 tatgaacatg aatgaggatg gccccatcat cttcgagaag cactccagat atagatatca
4261 ttatgatgct gactattccc ggtgggactc aacacaacaa agggatgtgc tagcagcagc
4321 actagaaatc atggttaagt tctctccaga accacacctg gcccagatag ttgcagaaga
4381 cctcctttcc cctagcgtga tggatgtggg tgactttcaa atatcaataa gtgagggtct
4441 cccctctggg gtgccttgca cctcccagtg gaattccatc gcccactggc tcctcactct
4501 gtgtgcactc tctgaagtca cggacctgtc ccctgatatc attcaggcca actccctttt
4561 ctccttctat ggtgatgatg agattgtaag cacagacata aagttggacc cagagaggct
4621 aacagcaaaa ctcaaggagt acggactgaa accaacccgt cccgacaaaa ctgaaggacc
4681 ccttgtcatc tctgaagacc tggatggtct gacattcctc cggagaactg tgacccgtga
4741 tccagctggc tggtttggaa aattggaaca aagttcaatt cttaggcaaa tgtactggac
4801 caggggtccc aaccatgaag acccatttga aacaatgata ccacactccc agagacccat
4861 acaattgatg tccttgctgg gcgaggctgc actccacggc ccggcattct acagcaaaat
4921 tagcaaatta gtcattgcag agttgaagga aggtggcatg gatttttacg tacccagaca
4981 agagccaatg ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa
5041 tctggctccc agttttgtga atgaagatgg cgtcgagtga cgtcaaccca tctgatgggt
5101 ccgcagccaa cctcgtccca gaggtcaaca atgaggttat ggctctggag cccgttgttg
5161 gtgccgccat cgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa
5221 acaattttgt acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg
5281 aaatactatg gagcgcgccc ttgggccctg atctaaatcc ctacttgtct catttggcca
5341 gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg gggaacgcgt
5401 tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa ttttccaact gaaggcttga
5461 gccccagcca ggtcactatg ttcccccata tagtagtaga tgttaggcaa ctagaacctg
5521 tgttgattcc cttacccgat gttaggaata atttctatca ttacaatcaa tcaaatgacc
5581 ccaccattaa gttgatagca atgttgtata caccacttag ggctaataat gctggggatg
5641 atgtcttcac agtttcttgc cgagttctca cgagaccatc ccccgatttt gacttcatat
5701 ttctagtgcc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca gttttgactg
5761 ttgaggagat gaccaattca agattcccca ttcctttgga aaagttgttc acgggtccca
5821 gcagtgcctt tgttgtccaa ccacaaaacg gtaggtgcac gactgatggc gtgctcctag
5881 gcaccaccca actgtctcct gtcaacatct gcacctttag aggagatgtc acccatatca
5941 caggtagtca taactataca atgaatttgg cttctcaaaa ttggagcaac tacgacccaa
6001 cagaagaaat cccagcccct ctagggactc cagactttgt ggggaagatt caaggtatgc
6061 ttacccaaac cacaaggaca gatggctcaa cacgcggcca caaagccaca gtgtacactg
6121 ggagcgccga ctttgctcca aaactgggta gagttcaatt tgaaactgac acaaacaatg
6181 attttgaagc taaccaaaac acaaagttca ccccagttgg tgtcatccaa gatggtggca
6241 ccacccaccg aaatgaaccc caacagtggg tgctcccaag ttactcaggc aggaacactc
6301 ctaatgtgca tctagccccc gctgtggccc caacttttcc gggtgagcaa ctcctcttct
6361 ttagatccac catgcccgga tgcagcgggt accccaacat ggatttggat tgtctgctcc
6421 cccaggaatg ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc
6481 tgctaagatt tgtgaatcca gacacaggta gggttttgtt tgaatgtaag cttcacaaat
6541 caggctatgt tacagtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt
6601 attttaggtt tgattcctgg gtcaaccagt tttacacgct tgcccccatg ggaaatggag
6661 cggggcgtag acgtgcacta taatggctgg agctttcttt gctggattgg catctgatgt
6721 ccttggctct ggacttggtt cccttatcaa tgctggggct ggggccatca accaaaaagt
6781 tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca gcaatctaca
6841 acaggcttcc tttcaacatg acaaagagat gctccaagca caaattgagg ctaccaaaag
6901 gttacaacag gaaatgatga aagttaagca ggcagtgctc ctagagggtg ggttctctga
6961 gacagatgca gcccgcgggg caattaacgc ccctatgaca aaagccttgg actggagcgg
7021 gacaaggtac tgggctcctg atgctaggac tacaacatac aatgcaggcc gcttttccac
7081 cccccaacca tcgggggcgc tgccaggaag agctaatttt agggatgctg tccctgctcg
7141 gggttcctct agtaagtctt ctaattcttc tatcgctact tctgtgtatt caaatcaaac
7201 tacttcaacg agacttggtt ctacagctgg ttctggtacc agtgtctcga gcttcccgac
7261 aactgcaagg actaggagct gggttgagga ccaaagtagg aatttgtcac ctttcatgag
7321 gggggcccac aacatatcgt ttgtcacccc accatctagc aggtcctcta gccaaggcac
7381 agtctcaacc gtgcctaaag agattttgga ctcctggact ggcgctttca acacgcgcag
7441 gcagccactc ttcgctcaca ttcgtaagcg aggggagtca cgggtgtaat gtgaaaagac
7501 aaaaattgat ta
//