Typing tool
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Typing tool
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Complete norovirus genomes
| OM372479 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7486
LOCUS OM372479 7501 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS168 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372479
VERSION OM372479.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7501)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7501)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7501
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS168"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5077
/gene="ORF1"
CDS <1..5077
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29340.1"
/translation="SAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEI
PPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSV
PPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLNRRMIQ
RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPI
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALK
NIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPN
VLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCAR
AFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVL
AAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTR
PDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2602
/gene="ORF1"
/product="p22"
mat_peptide 2603..3001
/gene="ORF1"
/product="VPg"
mat_peptide 3002..3544
/gene="ORF1"
/product="Pro"
mat_peptide 3545..5074
/gene="ORF1"
/product="RdRp"
gene 5058..6680
/gene="ORF2"
CDS 5058..6680
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29341.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6680..7486
/gene="ORF3"
CDS 6680..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29342.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ttccgctgcc gctgttgcta acagcaacaa cgacatcgca aaatcttcaa gtgacggtgt
61 gttttctaac atggctgtca cttttaagcg ggccctcggg gcgcggccta aacagccgcc
121 cccgaaggaa ataccaccca gacccccgcg accacccaca ccagaattgg tcaaaaagat
181 ccctcctccc ccacccaacg gggaggatga actagtggtc tcttacaacg ccaaagatgg
241 cgtttccgga ctgcctgagc tcaccactgt cagacaaccg gaagaaacca atacggcgtt
301 cagtgtcccc ccactcaacc aaagggagag cagggacgcc aaggagccac taactggaac
361 aatcattgaa atgtgggatg gagaaatcta ccactacggc ctgtacgtgg aacgaggtct
421 tatacttggt gtgcacaagc caccagcagc cattagcctc gccaaggtcg agctggcacc
481 gctctctttg ttctggagac ctgtatacac cccccagtac cttatctctc cagacactct
541 taggagatta catggagagt cattccccta cactgcattt gacaacaact gctatgcctt
601 ttgttgttgg gtattagacc taaacgactc atggctaaac aggagaatga ttcagagaac
661 aacaggcttc ttcaggccgt accaggattg gaacaggaaa cccctcccca ctatggatga
721 ttccaaatta aagaaggtag ccaatatatt cttgtgcact ttgtcttcac tattcaccag
781 acccattaag gacataatag gaaagttgaa acctctcaac atccttaaca ttctggctac
841 atgtgattgg accttcgcag gcatagtgga atccttaata ctcttggcag aactctttgg
901 agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttgctag gtgattatga
961 actgcaagga cccgaggacc ttgcagtgga actggtccca atagtgatgg gggggatagg
1021 tttggtgcta ggatttacca aagagaagat cggaaagatg ctgtcatccg ctgcatccac
1081 tttaagagct tgtaaagacc ttggtgcata cggactggaa atcttaaaat tggtcatgaa
1141 gtggttcttc ccaaagaaag aggaagcaaa tgaactggct atggtgagat ccatcgagga
1201 tgcagtacta gacctcgagg caattgaaaa caaccacatg accaccctgc tcaaagacaa
1261 agacagtttg gcaacctaca tgagaaccct tgaccttgag gaggagaaag ccagaaaact
1321 ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc aactctcttc tggcaagaat
1381 cgctgctgca cgttccctag tgcatcgggc gaaagaagag ctctccagca ggccgagacc
1441 tgtcgttgta atgatatcgg gaagaccagg gatagggaaa actcaccttg ctagggagct
1501 ggccaagaag atcgcggcct ccctcacagg ggaccagcgt gtgggcctta tcccacgcaa
1561 tggtgtcgac cactgggacg catacaaggg cgaaagggtt gtcctatggg acgactatgg
1621 aatgagcaac cccatccatg atgcccttag gttgcaggag cttgctgaca cttgccccct
1681 cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc tttgacagtg atgccataat
1741 tatcactacc aacctggcca acccagcacc actggattat gtcaactttg aagcgtgctc
1801 gagacgcatt gatttcctcg tgtacgcaga agcccctgag gtggagaagg caaagcgcga
1861 cttcccaggt caacctgaca tgtggaagaa cgctttcagt cctgacttct cacacataaa
1921 actgacattg gctccacagg gtggttttga caagaacggt aacaccccgc atggaaaagg
1981 ggtcatgaag accctcacca ctggctccct catcgcccgg gcatcagggt tactccatga
2041 gaggctagat gaatatgaat tgcaaggccc agccctcacc actttcaact ttgaccgcaa
2101 caagatactt gcttttagac agcttgctgc tgaaaacaag tatgggctga tggacacaat
2161 gagagttgga aaacagctca aggatgtcaa gactatgtca gacctcaaac aagcactcaa
2221 gaacatcgcg atcaagaagt gccagatagt gtacaatggt ggcacctaca cacttgaggc
2281 tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt gccactgtgc agaccaacaa
2341 tgaactggcc ggtgccctac accacctaag atgcgctaga atcaggtact atgttaagtg
2401 cgtccaggag gcactgtatt ccatcatcca aatcgctggg gctgcattcg tcaccacgcg
2461 catcgctaag cgcatgaata tacagaatct ctggtccaag ccacaggtgg aagacacaga
2521 agagatggcc aacaaagatg gttgcttaaa acccaaagat gatgaagagt ttgtcgtttc
2581 atccgacgac atcaaaactg agggcaagaa agggaagaac aagtccggcc gtggcaagaa
2641 gcacacagcc ttttcaagta aagggctcag tgatgaagag tacgatgagt acaagagaat
2701 cagagaagaa aggaatggta agtactccat agaagagtac cttcaggaca gagacaggta
2761 ctacgaggag gtggccattg ccagggcaac cgaagaggac ttctgtgaag aagaagaggc
2821 caaaatccgg cagaggattt tcagaccgac aaggaaacaa cgcaaagaag agagggcttc
2881 tctcggcttg gtcacaggat ctgaaatcag gaagagaaac ccagaagact tcaaacccaa
2941 gggaaagctg tgggctgatg acgacagaag tgttgactac aatgagaaac tcaactttga
3001 ggccccacca agcatctggt cgcggatagt caactttggt tcaggctggg gcttctgggt
3061 ctcccccagt ctgtttataa catcaaccca tgtcataccc caaggtgcaa aggagttctt
3121 cggagtccct atcaagcaaa tccagataca caagtcaggt gaattctgcc gattgagatt
3181 cccaaagcca atcagaaccg atgtgacggg catgattcta gaagaaggtg cgcctgaggg
3241 gaccgtggcc acactgctca tcaagagacc aactggagag ctcatgcctc tggcagccag
3301 aatggggacc catgcaacca tgaaaattca ggggcgcaca gttggagggc aaatgggtat
3361 gctcctgaca ggatccaacg ccaagagtat ggacctaggc acaacaccag gcgactgcgg
3421 ctgcccctac atctacaaga gggggaatga ctacgtggtc attggggtcc atacggctgc
3481 tgcccgtgga ggaaacactg tcatatgtgc cacccaggga aatgagggag aggccacact
3541 tgaaggaggt gacagtaaag ggacatactg tggcgcgcca atcttgggcc cagggagcgc
3601 tccgaagctc agcaccaaga ctaagttttg gagatcatcc acaacaccac tcccacctgg
3661 cacctacgaa ccagcctacc tcggtggcaa agaccctaga gtcaaaggtg gcccttcatt
3721 gcaacaagtt atgagggacc agctgaagcc attcacagaa cccaggggca aaccaccaag
3781 accaaatgtg ttggaagctg ccaagaaaac catcatcaat gtccttgagc aaacaattga
3841 tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc cttgacaaaa ccacctccag
3901 cggccacccg caccacatgc ggaaaaacga ctgttggaat ggggagtcct tcacaggaaa
3961 gttggctgac caagcctcca aggccaacct aatgtttgaa gagggaaaga acatgactcc
4021 agtctacaca ggtgcactta aagatgagtt ggtgaagacc gataaagttt atggtaaggt
4081 caagaagagg cttctatggg gctcagatct ggcgaccatg atacggtgcg cccgagcttt
4141 tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca ctccctgtca gagttggtat
4201 gaacatgaat gaggatggcc ccatcatctt cgagaagcac tctaggtata gatatcatta
4261 tgatgctgac tattcccggt gggactcaac acaacaaagg gatgtgctag cagcagcact
4321 agaaatcatg gttaagttct ctccagaacc acacctggcc cagatagttg cagaagacct
4381 cctctcccct agcgtgatgg atgtgggtga ctttcaaata tcaataagtg agggcctccc
4441 ctctggggtg ccttgcacct cccagtggaa ttccatcgcc cactggctcc tcactctgtg
4501 tgcactctct gaagtcacgg acctgtcccc tgatatcatt caggccaact cccttttctc
4561 cttctatggt gatgatgaga ttgtaagcac ggacataaag ttggacccag agaggctaac
4621 agcaaaactc aaggagtacg ggctgaaacc aacccgcccc gacaaaactg aaggacccct
4681 tgttatctct gaagacctgg atggtctgac attcctccgg agaactgtga cccgtgatcc
4741 agctggctgg tttggaaaat tggaacaaag ttcaattctt aggcaaatgt actggaccag
4801 gggtcccaac catgaagacc catttgaaac aatgatacca cactcccaaa gacccataca
4861 attgatgtcc ttgctgggcg aggctgcact ccacggcccg gcattctaca gcaaaattag
4921 caaattagtc attgcagagt tgaaggaagg tggcatggat ttttacgtac ccagacaaga
4981 gccaatgttc agatggatga gattctcaga tctgagcacg tgggagggcg atcgcaatct
5041 tgctcccagt tttgtgaatg aagatggcgt cgagtgacgt caacccatct gatgggtccg
5101 cagccaacct cgtcccagag gtcaacaatg aggtcatggc tctggagccc gttgttggtg
5161 ccgccattgc ggcacctgta gcgggccaac aaaatgtaat tgacccctgg attagaaaca
5221 attttgtaca agcccctggt ggagagttta cagtatcccc tagaaacgct ccaggtgaaa
5281 tactatggag cgcgcccctg ggccctgatc taaaccctta cttatcccat ttggccagaa
5341 tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat tctcgcgggg aacgcgttca
5401 ccgccgggaa ggtcatattt gcagcagtcc caccaaattt tccaactgaa ggcttgagcc
5461 ccagccaggt cactatgttc ccccatatag tagtagatgt taggcaacta gaacctgtgt
5521 tgattccctt acccgatgtt aggaataatt tctatcatta caatcaatca aatgacccca
5581 ccattaagtt gatagcaatg ttgtatacac cacttagggc taataatgct ggggatgatg
5641 tcttcacagt ttcttgccga gttctcacga gaccatcccc cgactttgac ttcatatttc
5701 tagtgccacc cacagttgag tcaagaacta aaccattctc tgtcccagtt ttgactgttg
5761 aggagatgac caattcaaga ttccccattc ctttggaaaa gttgttcacg ggtcccagca
5821 gtgcctttgt tgtccaacca caaaacggta ggtgcacgac tgatggcgtg ctcctaggca
5881 ccacccaact gtctcctgtc aatatctgca ccttcagagg agatgtcacc catattacag
5941 gtagtcataa ctatacaatg aatttggctt ctcaaaattg gagcaactac gacccaacag
6001 aagaaatccc agcccctcta gggactccag actttgtggg gaagattcaa ggcatgctta
6061 cccaaaccac aaggacagat ggctcaacac gcggccacaa agccacagtg tacactggga
6121 gcgccgactt cgctccaaaa ctgggtagag ttcaatttga aactgacaca aacaatgatt
6181 ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt catccaagat ggtggcacca
6241 cccatcgaaa tgaaccccaa cagtgggtgc tcccaagtta ctcaggcagg aacactccta
6301 atgtgcatct ggcccccgct gtggccccca cttttccggg tgagcaactc ctcttcttta
6361 gatccaccat gcccggatgc agcgggtacc ccaacatgga tttggattgt ctgctccccc
6421 aggaatgggt gcagtacttc taccaggagg cagccccagc acaatctgat gtggctctgc
6481 taagatttgt gaatccagac acaggtaggg ttttgtttga atgtaagctt cataaatcag
6541 gctatgttac agtggctcac actggccaac atgatttggt tattcccccc aatggttatt
6601 ttaggtttga ttcctgggtc aaccagtttt acacgcttgc ccccatggga aatggagcgg
6661 ggcgtagacg tgcactataa tggctggagc tttctttgct ggattggcat ctgatgtcct
6721 tggctctgga cttggttccc ttatcaatgc tggggctggg gccatcaacc aaaaagttga
6781 gtttgaaaat aacagaaaat tgcaacaagc atccttccaa tttagcagca atctacaaca
6841 ggcttccttt caacatgaca aagagatgct ccaagcacaa attgaggcta ccaaaaggtt
6901 acaacaggaa atgatgaaag ttaagcaggc aatgctccta gagggtgggt tctctgagac
6961 agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa gccttggact ggagcgggac
7021 aaggtactgg gctcctgatg ctaggactac aacatacaat gcaggccgct tttccacccc
7081 ccaaccatcg ggggcgctgc caggaagagc taattttagg gatgctgtcc ctgctcgggg
7141 ttcctctagt aagtcttcta attcttctac tgctacttct gtgtattcaa atcaaactgc
7201 ttcaacgaga cttggttcta cagctggttc tggtaccagt gtctcgagct tcccgtcaac
7261 tgcaaggact aggagctggg ttgaggatca aagcaggaat ttgtcacctt tcatgagggg
7321 ggcccacaac atatcgtttg tcaccccacc atctagcagg tcctctagcc aaggcacagt
7381 ctcaaccgtg cctaaagaga ttttggactc ctggactggc gctttcaaca cgcgcaggca
7441 gccactcttc gctcacattc gtaagcgagg ggagtcacgg gtgtaatgtg aaaagacaaa
7501 a
//