Typing tool
|
Complete norovirus genomes
OM372479 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5077 ORF2: 5058..6680 ORF3: 6680..7486LOCUS OM372479 7501 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS168 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OM372479 VERSION OM372479.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7501) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7501) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7501 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS168" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Nov-2018" /note="genotype: GII" gene <1..5077 /gene="ORF1" CDS <1..5077 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="UJP29340.1" /translation="SAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEI PPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSV PPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAP LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLNRRMIQ RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILN ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPI VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL AMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV GTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ PDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL DEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALK NIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYV KCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEE FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR NPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH VIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIK RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK RGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGPGSAPKLS TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPN VLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCAR AFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVL AAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAH WLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTR PDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFET MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF SDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..967 /gene="ORF1" /product="p48" mat_peptide 968..2065 /gene="ORF1" /product="NTPase" mat_peptide 2066..2602 /gene="ORF1" /product="p22" mat_peptide 2603..3001 /gene="ORF1" /product="VPg" mat_peptide 3002..3544 /gene="ORF1" /product="Pro" mat_peptide 3545..5074 /gene="ORF1" /product="RdRp" gene 5058..6680 /gene="ORF2" CDS 5058..6680 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP29341.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6680..7486 /gene="ORF3" CDS 6680..7486 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP29342.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 ttccgctgcc gctgttgcta acagcaacaa cgacatcgca aaatcttcaa gtgacggtgt 61 gttttctaac atggctgtca cttttaagcg ggccctcggg gcgcggccta aacagccgcc 121 cccgaaggaa ataccaccca gacccccgcg accacccaca ccagaattgg tcaaaaagat 181 ccctcctccc ccacccaacg gggaggatga actagtggtc tcttacaacg ccaaagatgg 241 cgtttccgga ctgcctgagc tcaccactgt cagacaaccg gaagaaacca atacggcgtt 301 cagtgtcccc ccactcaacc aaagggagag cagggacgcc aaggagccac taactggaac 361 aatcattgaa atgtgggatg gagaaatcta ccactacggc ctgtacgtgg aacgaggtct 421 tatacttggt gtgcacaagc caccagcagc cattagcctc gccaaggtcg agctggcacc 481 gctctctttg ttctggagac ctgtatacac cccccagtac cttatctctc cagacactct 541 taggagatta catggagagt cattccccta cactgcattt gacaacaact gctatgcctt 601 ttgttgttgg gtattagacc taaacgactc atggctaaac aggagaatga ttcagagaac 661 aacaggcttc ttcaggccgt accaggattg gaacaggaaa cccctcccca ctatggatga 721 ttccaaatta aagaaggtag ccaatatatt cttgtgcact ttgtcttcac tattcaccag 781 acccattaag gacataatag gaaagttgaa acctctcaac atccttaaca ttctggctac 841 atgtgattgg accttcgcag gcatagtgga atccttaata ctcttggcag aactctttgg 901 agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttgctag gtgattatga 961 actgcaagga cccgaggacc ttgcagtgga actggtccca atagtgatgg gggggatagg 1021 tttggtgcta ggatttacca aagagaagat cggaaagatg ctgtcatccg ctgcatccac 1081 tttaagagct tgtaaagacc ttggtgcata cggactggaa atcttaaaat tggtcatgaa 1141 gtggttcttc ccaaagaaag aggaagcaaa tgaactggct atggtgagat ccatcgagga 1201 tgcagtacta gacctcgagg caattgaaaa caaccacatg accaccctgc tcaaagacaa 1261 agacagtttg gcaacctaca tgagaaccct tgaccttgag gaggagaaag ccagaaaact 1321 ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc aactctcttc tggcaagaat 1381 cgctgctgca cgttccctag tgcatcgggc gaaagaagag ctctccagca ggccgagacc 1441 tgtcgttgta atgatatcgg gaagaccagg gatagggaaa actcaccttg ctagggagct 1501 ggccaagaag atcgcggcct ccctcacagg ggaccagcgt gtgggcctta tcccacgcaa 1561 tggtgtcgac cactgggacg catacaaggg cgaaagggtt gtcctatggg acgactatgg 1621 aatgagcaac cccatccatg atgcccttag gttgcaggag cttgctgaca cttgccccct 1681 cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc tttgacagtg atgccataat 1741 tatcactacc aacctggcca acccagcacc actggattat gtcaactttg aagcgtgctc 1801 gagacgcatt gatttcctcg tgtacgcaga agcccctgag gtggagaagg caaagcgcga 1861 cttcccaggt caacctgaca tgtggaagaa cgctttcagt cctgacttct cacacataaa 1921 actgacattg gctccacagg gtggttttga caagaacggt aacaccccgc atggaaaagg 1981 ggtcatgaag accctcacca ctggctccct catcgcccgg gcatcagggt tactccatga 2041 gaggctagat gaatatgaat tgcaaggccc agccctcacc actttcaact ttgaccgcaa 2101 caagatactt gcttttagac agcttgctgc tgaaaacaag tatgggctga tggacacaat 2161 gagagttgga aaacagctca aggatgtcaa gactatgtca gacctcaaac aagcactcaa 2221 gaacatcgcg atcaagaagt gccagatagt gtacaatggt ggcacctaca cacttgaggc 2281 tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt gccactgtgc agaccaacaa 2341 tgaactggcc ggtgccctac accacctaag atgcgctaga atcaggtact atgttaagtg 2401 cgtccaggag gcactgtatt ccatcatcca aatcgctggg gctgcattcg tcaccacgcg 2461 catcgctaag cgcatgaata tacagaatct ctggtccaag ccacaggtgg aagacacaga 2521 agagatggcc aacaaagatg gttgcttaaa acccaaagat gatgaagagt ttgtcgtttc 2581 atccgacgac atcaaaactg agggcaagaa agggaagaac aagtccggcc gtggcaagaa 2641 gcacacagcc ttttcaagta aagggctcag tgatgaagag tacgatgagt acaagagaat 2701 cagagaagaa aggaatggta agtactccat agaagagtac cttcaggaca gagacaggta 2761 ctacgaggag gtggccattg ccagggcaac cgaagaggac ttctgtgaag aagaagaggc 2821 caaaatccgg cagaggattt tcagaccgac aaggaaacaa cgcaaagaag agagggcttc 2881 tctcggcttg gtcacaggat ctgaaatcag gaagagaaac ccagaagact tcaaacccaa 2941 gggaaagctg tgggctgatg acgacagaag tgttgactac aatgagaaac tcaactttga 3001 ggccccacca agcatctggt cgcggatagt caactttggt tcaggctggg gcttctgggt 3061 ctcccccagt ctgtttataa catcaaccca tgtcataccc caaggtgcaa aggagttctt 3121 cggagtccct atcaagcaaa tccagataca caagtcaggt gaattctgcc gattgagatt 3181 cccaaagcca atcagaaccg atgtgacggg catgattcta gaagaaggtg cgcctgaggg 3241 gaccgtggcc acactgctca tcaagagacc aactggagag ctcatgcctc tggcagccag 3301 aatggggacc catgcaacca tgaaaattca ggggcgcaca gttggagggc aaatgggtat 3361 gctcctgaca ggatccaacg ccaagagtat ggacctaggc acaacaccag gcgactgcgg 3421 ctgcccctac atctacaaga gggggaatga ctacgtggtc attggggtcc atacggctgc 3481 tgcccgtgga ggaaacactg tcatatgtgc cacccaggga aatgagggag aggccacact 3541 tgaaggaggt gacagtaaag ggacatactg tggcgcgcca atcttgggcc cagggagcgc 3601 tccgaagctc agcaccaaga ctaagttttg gagatcatcc acaacaccac tcccacctgg 3661 cacctacgaa ccagcctacc tcggtggcaa agaccctaga gtcaaaggtg gcccttcatt 3721 gcaacaagtt atgagggacc agctgaagcc attcacagaa cccaggggca aaccaccaag 3781 accaaatgtg ttggaagctg ccaagaaaac catcatcaat gtccttgagc aaacaattga 3841 tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc cttgacaaaa ccacctccag 3901 cggccacccg caccacatgc ggaaaaacga ctgttggaat ggggagtcct tcacaggaaa 3961 gttggctgac caagcctcca aggccaacct aatgtttgaa gagggaaaga acatgactcc 4021 agtctacaca ggtgcactta aagatgagtt ggtgaagacc gataaagttt atggtaaggt 4081 caagaagagg cttctatggg gctcagatct ggcgaccatg atacggtgcg cccgagcttt 4141 tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca ctccctgtca gagttggtat 4201 gaacatgaat gaggatggcc ccatcatctt cgagaagcac tctaggtata gatatcatta 4261 tgatgctgac tattcccggt gggactcaac acaacaaagg gatgtgctag cagcagcact 4321 agaaatcatg gttaagttct ctccagaacc acacctggcc cagatagttg cagaagacct 4381 cctctcccct agcgtgatgg atgtgggtga ctttcaaata tcaataagtg agggcctccc 4441 ctctggggtg ccttgcacct cccagtggaa ttccatcgcc cactggctcc tcactctgtg 4501 tgcactctct gaagtcacgg acctgtcccc tgatatcatt caggccaact cccttttctc 4561 cttctatggt gatgatgaga ttgtaagcac ggacataaag ttggacccag agaggctaac 4621 agcaaaactc aaggagtacg ggctgaaacc aacccgcccc gacaaaactg aaggacccct 4681 tgttatctct gaagacctgg atggtctgac attcctccgg agaactgtga cccgtgatcc 4741 agctggctgg tttggaaaat tggaacaaag ttcaattctt aggcaaatgt actggaccag 4801 gggtcccaac catgaagacc catttgaaac aatgatacca cactcccaaa gacccataca 4861 attgatgtcc ttgctgggcg aggctgcact ccacggcccg gcattctaca gcaaaattag 4921 caaattagtc attgcagagt tgaaggaagg tggcatggat ttttacgtac ccagacaaga 4981 gccaatgttc agatggatga gattctcaga tctgagcacg tgggagggcg atcgcaatct 5041 tgctcccagt tttgtgaatg aagatggcgt cgagtgacgt caacccatct gatgggtccg 5101 cagccaacct cgtcccagag gtcaacaatg aggtcatggc tctggagccc gttgttggtg 5161 ccgccattgc ggcacctgta gcgggccaac aaaatgtaat tgacccctgg attagaaaca 5221 attttgtaca agcccctggt ggagagttta cagtatcccc tagaaacgct ccaggtgaaa 5281 tactatggag cgcgcccctg ggccctgatc taaaccctta cttatcccat ttggccagaa 5341 tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat tctcgcgggg aacgcgttca 5401 ccgccgggaa ggtcatattt gcagcagtcc caccaaattt tccaactgaa ggcttgagcc 5461 ccagccaggt cactatgttc ccccatatag tagtagatgt taggcaacta gaacctgtgt 5521 tgattccctt acccgatgtt aggaataatt tctatcatta caatcaatca aatgacccca 5581 ccattaagtt gatagcaatg ttgtatacac cacttagggc taataatgct ggggatgatg 5641 tcttcacagt ttcttgccga gttctcacga gaccatcccc cgactttgac ttcatatttc 5701 tagtgccacc cacagttgag tcaagaacta aaccattctc tgtcccagtt ttgactgttg 5761 aggagatgac caattcaaga ttccccattc ctttggaaaa gttgttcacg ggtcccagca 5821 gtgcctttgt tgtccaacca caaaacggta ggtgcacgac tgatggcgtg ctcctaggca 5881 ccacccaact gtctcctgtc aatatctgca ccttcagagg agatgtcacc catattacag 5941 gtagtcataa ctatacaatg aatttggctt ctcaaaattg gagcaactac gacccaacag 6001 aagaaatccc agcccctcta gggactccag actttgtggg gaagattcaa ggcatgctta 6061 cccaaaccac aaggacagat ggctcaacac gcggccacaa agccacagtg tacactggga 6121 gcgccgactt cgctccaaaa ctgggtagag ttcaatttga aactgacaca aacaatgatt 6181 ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt catccaagat ggtggcacca 6241 cccatcgaaa tgaaccccaa cagtgggtgc tcccaagtta ctcaggcagg aacactccta 6301 atgtgcatct ggcccccgct gtggccccca cttttccggg tgagcaactc ctcttcttta 6361 gatccaccat gcccggatgc agcgggtacc ccaacatgga tttggattgt ctgctccccc 6421 aggaatgggt gcagtacttc taccaggagg cagccccagc acaatctgat gtggctctgc 6481 taagatttgt gaatccagac acaggtaggg ttttgtttga atgtaagctt cataaatcag 6541 gctatgttac agtggctcac actggccaac atgatttggt tattcccccc aatggttatt 6601 ttaggtttga ttcctgggtc aaccagtttt acacgcttgc ccccatggga aatggagcgg 6661 ggcgtagacg tgcactataa tggctggagc tttctttgct ggattggcat ctgatgtcct 6721 tggctctgga cttggttccc ttatcaatgc tggggctggg gccatcaacc aaaaagttga 6781 gtttgaaaat aacagaaaat tgcaacaagc atccttccaa tttagcagca atctacaaca 6841 ggcttccttt caacatgaca aagagatgct ccaagcacaa attgaggcta ccaaaaggtt 6901 acaacaggaa atgatgaaag ttaagcaggc aatgctccta gagggtgggt tctctgagac 6961 agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa gccttggact ggagcgggac 7021 aaggtactgg gctcctgatg ctaggactac aacatacaat gcaggccgct tttccacccc 7081 ccaaccatcg ggggcgctgc caggaagagc taattttagg gatgctgtcc ctgctcgggg 7141 ttcctctagt aagtcttcta attcttctac tgctacttct gtgtattcaa atcaaactgc 7201 ttcaacgaga cttggttcta cagctggttc tggtaccagt gtctcgagct tcccgtcaac 7261 tgcaaggact aggagctggg ttgaggatca aagcaggaat ttgtcacctt tcatgagggg 7321 ggcccacaac atatcgtttg tcaccccacc atctagcagg tcctctagcc aaggcacagt 7381 ctcaaccgtg cctaaagaga ttttggactc ctggactggc gctttcaaca cgcgcaggca 7441 gccactcttc gctcacattc gtaagcgagg ggagtcacgg gtgtaatgtg aaaagacaaa 7501 a //