Typing tool
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Typing tool
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Complete norovirus genomes
| OM372478 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5094
ORF2: 5075..6697
ORF3: 6697..7503
LOCUS OM372478 7515 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS167 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372478
VERSION OM372478.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7515)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS167"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5094
/gene="ORF1"
CDS <1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP29337.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6697
/gene="ORF2"
CDS 5075..6697
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29338.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6697..7503
/gene="ORF3"
CDS 6697..7503
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29339.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIHKRGESRV"
ORIGIN
1 atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga catcgcaaaa
61 tcttcaagtg acggtatgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg
121 cggcctaaac agccgccccc gaaggaaata ccacccagac ccccgcgacc acccacacca
181 gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact agtggtctct
241 tacagcgcca aagatggcgt ttccggactg cctgagctca ccactgtcag acaaccggaa
301 gaaaccaaca cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag
361 gagccattaa ctggaacaat cattgaaatg tgggatggag aaatctacca ttacggcctg
421 tacgtggaac gaggtcttat acttggtgtg cacaagccac cagcagccat cagcctcgcc
481 aaggtcgagc tggcaccgct ctctctgttc tggagacctg tatacacccc ccagtacctt
541 atctctccag acactcttag gagattacat ggagagtcat tcccctacac tgcatttgat
601 aacaattgct acgccttttg ttgttgggta ttagacctaa acgactcatg gctaagcagg
661 agaatgattc agagaacaac aggcttcttc aggccgtacc aggattggaa caggaaaccc
721 ctccccacta tggatgattc caaattaaag aaggtagcca acatattctt gtgcactttg
781 tcttcactat tcactaggcc cattaaggac ataataggga agttgaaacc cctcaacatc
841 cttaatattc tggctacatg tgattggacc ttcgcaggca tagtggaatc cttaatactc
901 ttagcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc
961 ttgctaggtg attatgaact gcaaggaccc gaggaccttg cagtggaact ggtcccaata
1021 gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaatcgg aaagatgctg
1081 tcatccgctg catccacttt gagagcttgt aaagaccttg gtgcatacgg actggaaatc
1141 ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg
1201 gtgagatcca tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa ccacatgacc
1261 accctgctca aagacaaaga cagcttgaca acctatatga gaacccttga ccttgaggag
1321 gagaaagcca gaaaactctc aaccaaatct gcttcacccg atattgtggg cacaatcaac
1381 tctcttctgg caaggatcgc tgctgcacgc tccctagtgc atcgagcgaa agaagagctc
1441 tccagcaggc cgagacctgt cgttgtaatg atatcgggaa gaccaggtat agggaaaact
1501 caccttgcca gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg
1561 ggccttatcc cacgcaatgg tgtcgatcac tgggacgcat acaagggcga aagagttgtc
1621 ctatgggacg actatggaat gagcaacccc atccatgatg ccctcagatt gcaggagctt
1681 gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaggg aaaagtcttt
1741 gacagtgatg ccataattat caccaccaac ctggccaacc cagcaccact ggattatgtc
1801 aactttgaag cgtgctcgag acgcattgat ttcctcgtgt acgcagaagc ccctgaggtg
1861 gagaaggcga agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct
1921 gacttctcac acataaaact atcgttggct ccacaggggg gttttgacaa gaacggcaac
1981 accccgcacg gaaagggaat tatgaagacc ctcaccactg gctccctcat cgcccgagca
2041 tcagggttac tccatgagag gctagatgaa tatgaattgc aaggcccagc cctcactact
2101 ttcaactttg accgcaacaa gatacttgct tttagacagc ttgctgctga aaacaagtat
2161 gggctgatgg acacaatgag agttgggaaa cagctcaagg atgtcaagac tatgtcagac
2221 ctcaaacaag cactcaagaa catcgcgatc aagaagtgcc agatagtgta caatggtggc
2281 acctacacac ttgaggctga tggcaagggc agtgtgaagg ttgacaaagt gcaaagtgcc
2341 actgtgcaga ccaacaatga actagccggt gccctacacc acctaagatg cgctagaatc
2401 agatactatg ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat cgctggggct
2461 gcattcgtca ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaagcca
2521 caggtggaag acacagaaga gatggccaac aaagatggtt gcctaaaacc caaagatgat
2581 gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag
2641 tccggccgtg gcaagaagca cacagccttt tcaagtaaag ggctcagtga tgaggagtac
2701 gatgagtaca aaagaatcag agaagaaagg aatggtaagt actccataga agagtacctt
2761 caggacagag acaggtacta cgaggaggtg gccattgcca gggcaaccga agaggacttc
2821 tgtgaagaag aagaggccaa aatccggcag aggattttca gaccaacaag gaaacaacgc
2881 aaagaagaga gggcctctct cggcttggtc acaggctctg aaatcaggaa gagaaaccca
2941 gaagatttca aacccaaggg aaagctgtgg gctgatgatg acagaagtgt tgactacaat
3001 gagaaactca actttgaagc cccaccaagc atctggtcgc ggatagtcaa ctttggttca
3061 ggctggggct tctgggtctc ccccagtctg tttataacat caacccatgt cataccccag
3121 ggtgcaaaag agttcttcgg agtccctatc aagcaaatcc agatacacaa gtcaggtgaa
3181 ttctgtcgac tgagattccc aaagccaatc agaactgatg tgacgggcat gattctagaa
3241 gaaggtgcgc ccgaggggac cgtggccaca ctgctcatta agagaccaac tggagagctc
3301 atgcctctgg cagccagaat ggggacccat gcaaccatga aaattcaggg gcgcacagtt
3361 ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagcatgga cctaggcaca
3421 acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggttata
3481 ggggtccata cggccgctgc ccgcggagga aacactgtca tatgtgccac ccagggaagt
3541 gagggagagg ccacactcga aggaggtgat agtaagggga catactgtgg cgcaccaatc
3601 ttgggcccag ggagcgctcc gaagctcagc accaagacta agttttggag atcatccaca
3661 acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc
3721 aaaggtggcc cttcattgca acaagttatg agagaccagc tgaagccatt cacagaaccc
3781 agaggcaaac caccaagacc aaatgtgttg gaagctgcca agaagaccat catcaatgtc
3841 cttgagcaaa caattgatcc accccaaaaa tggtcatttg cgcaagcttg cgcatccctt
3901 gacaagacca cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg
3961 gagtccttca caggaaaatt ggctgaccaa gcctccaagg ccaacctaat gtttgaagag
4021 ggaaagaaca tgaccccagt ctacacaggt gcacttaaag atgagttggt gaagaccgat
4081 aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatgata
4141 cggtgcgccc gagcttttgg aggcctcatg gatgaactca aggcacactg tgtcacgctc
4201 cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatctttga gaagcactcc
4261 agatatagat atcactatga tgctgactat tcccgatggg actcaacaca acaaagggat
4321 gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag
4381 atagttgcag aagacctcct ctcccctagc gtgatggatg tgggtgactt tcaaatatca
4441 ataagtgagg gcctcccctc tggggtgcct tgtacctccc agtggaattc catcgcccac
4501 tggctcctca ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag
4561 gccaactccc ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg
4621 gacccagaga ggctgacagc aaaactcaag gagtacgggc tgaaaccaac ccgccccgac
4681 aaaactgaag gaccccttgt tatctctgaa gacctggatg gtctaacatt cctccggaga
4741 actgtgaccc gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattcttagg
4801 caaatgtact ggaccagggg tcccaaccat gaagatccat ttgaaacaat gataccacac
4861 tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca cggcccggca
4921 ttctacagca aaattagcaa attagtcatt gcagagttga aggaaggtgg catggatttt
4981 tatgtaccca gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg
5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa
5101 cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct
5161 ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa atgtaattga
5221 cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag tgtcccctag
5281 aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctactt
5341 atctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct
5401 cgcggggaac gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc
5461 aactgaaggc ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag
5521 gcaactagaa cctgtgttga ttcccttacc cgatgttagg aataatttct atcattataa
5581 tcaatcaaat gaccccacta ttaagttgat agcaatgttg tatacaccac ttagggctaa
5641 taatgctggg gatgatgtct tcacagtttc ttgccgagtt ctcacgaggc catcccccga
5701 ttttgacttc atatttctag tgccacccac agttgagtca agaactaagc cattctctgt
5761 cccaatttta actgttgagg aaatgaccaa ttcaagattc cccattcctt tggaaaagtt
5821 gttcacgggt cccagcagtg cctttgttgt ccaaccacaa aacggtagat gcacgactga
5881 tggcgtgctc ctaggcacca cccaactgtc tcctgttaac atctgcacct tcagaggaga
5941 tgtcacccat attacaggta gccataacta cacaatgaat ttggcttctc aaaattggag
6001 caattacgac ccaacggaag aaattccagc ccctctaggg actccagact ttgtggggaa
6061 gattcaaggc atgctcaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc
6121 cacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac
6181 tgacacaaac aatgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat
6241 ccaagatggt ggcaccaccc accgaaatga accccaacag tgggtgctcc caagttactc
6301 aggcaggaac actcctaatg tgcatctggc ccccgctgta gcccccactt ttccgggtga
6361 gcaactcctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt
6421 ggattgtctg ctcccccagg aatgggtgca gtacttctat caagaggcag ccccagcaca
6481 atccgatgtg gctctgctaa ggtttgtgaa tccagacaca ggtagggttt tgtttgaatg
6541 taagcttcat aaatcaggct atgttacagt ggctcacact ggccagcatg atttggttat
6601 cccccccaat ggttatttta ggttcgattc ctgggtcaac cagttttaca cgcttgcccc
6661 catgggaaat ggagcggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga
6721 ttggcatctg atgtccttgg ctctgggctt ggttccctta tcaacgctgg ggctggggcc
6781 atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc ctttcaattt
6841 agcagcaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt
6901 gaggctacca aaaagttaca acaggaaatg atgaaagtta aacaggcaat gctcttagag
6961 ggtgggttct ctgagacaga tgcagcccgc ggggcaatca acgcccctat gacaaaagct
7021 ttggattgga gcgggacaag gtactgggct cctgatgcta ggactacaac atacaatgca
7081 ggccgctttt ccacccccca accatcgggg gcgctgccag gaagagctaa tcttagggat
7141 gctgtccctg ctcggggttc ctctagtagg tcttctaatt cctctactgc tacttctgtg
7201 tactcaaatc aaactatttc aacgagactt ggttctacag ctggttctgg taccagtgtc
7261 tcgagcttcc cgtcaactgc aaggactagg agctgggttg aggatcaaag taggaatttg
7321 tcacctttta tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc
7381 tctagccaag gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct
7441 ttcaacacgc gcaggcagcc actcttcgct cacattcata agcgagggga gtcacgggtg
7501 taatgtgaaa agaca
//