Typing tool
|
Complete norovirus genomes
OM372477 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5097 ORF2: 5078..6700 ORF3: 6700..7489LOCUS OM372477 7489 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS163 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION OM372477 VERSION OM372477.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7489) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7489) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7489 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS163" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Oct-2018" /note="genotype: GII" gene <1..5097 /gene="ORF1" CDS <1..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UJP29334.1" /translation="KMASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPK QPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEE TNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL AKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL AVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTK SASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARAS GLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMS DLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCL KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRRQRKEERASLGLVT GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS LFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT VVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGP GSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLA TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKE YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..987 /gene="ORF1" /product="p48" mat_peptide 988..2085 /gene="ORF1" /product="NTPase" mat_peptide 2086..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6700 /gene="ORF2" CDS 5078..6700 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP29335.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6700..>7489 /gene="ORF3" CDS 6700..>7489 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP29336.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIHKR" ORIGIN 1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcca acagcaacaa cgacatcgca 61 aaatcttcaa gtgacggtat gttttctaac atggctgtca cttttaagcg ggccctcggg 121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccgcg accacccaca 181 ccagaattgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga actagtggtc 241 tcttacagcg ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt cagacaaccg 301 gaagaaacca acacggcgtt cagtgtcccc ccactcaacc aaagggagag cagggacgcc 361 aaggagccat taactggaac aatcattgaa atgtgggatg gagaaatcta ccattacggc 421 ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccagcagc catcagcctc 481 gccaaggtcg agctggcacc gctctctctg ttctggagac ctgtatacac cccccagtac 541 cttatctctc cagacactct taggagatta catggagagt cattccccta cactgcattt 601 gataacaatt gctacgcctt ttgttgttgg gtattagacc taaacgactc atggctaagc 661 aggagaatga ttcagagaac aacaggcttc ttcaggccgt accaggattg gaacaggaaa 721 cccctcccca ctatggatga ttccaaatta aagaaggtag ccaacatatt cttgtgcact 781 ttgtcttcac tattcactag gcccattaag gacataatag ggaagttgaa acccctcaac 841 atccttaata ttctggctac atgtgattgg accttcgcag gcatagtgga atccttaata 901 ctcttagcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc 961 cccttgctag gtgattatga actgcaagga cccgaggacc ttgcagtgga actggtccca 1021 atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat cggaaagatg 1081 ctgtcatccg ctgcatccac tttgagagct tgtaaagacc ttggtgcata cggactggaa 1141 atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct 1201 atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg 1261 accaccctgc tcaaagacaa agacagcttg acaacctata tgagaaccct tgaccttgag 1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc 1381 aactctcttc tggcaaggat cgctgctgca cgctccctag tgcatcgagc gaaagaagag 1441 ctctccagca ggccgagacc tgtcgttgta atgatatcgg gaagaccagg tatagggaaa 1501 actcaccttg ccagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt 1561 gtgggcctta tcccacgcaa tggtgtcgat cactgggacg catacaaggg cgaaagagtt 1621 gtcctatggg acgactatgg aatgagcaac cccatccatg atgccctcag attgcaggag 1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa gggaaaagtc 1741 tttgacagtg atgccataat tatcaccacc aacctggcca acccagcacc actggattat 1801 gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag 1861 gtggagaagg cgaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagt 1921 cctgacttct cacacataaa actatcgttg gctccacagg ggggttttga caagaacggc 1981 aacaccccgc acggaaaggg aatcatgaag accctcacca ctggctccct catcgcccga 2041 gcatcagggt tactccatga gaggctagat gaatatgaat tgcaaggccc agccctcact 2101 actttcaact ttgaccgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag 2161 tatgggctga tggacacaat gagagttggg aaacagctca aggatgtcaa gactatgtca 2221 gacctcaaac aagcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt 2281 ggcacctaca cacttgaggc tgatggcaag ggcagtgtga aggttgacaa agtgcaaagt 2341 gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag atgcgctaga 2401 atcagatact atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg 2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag 2521 ccacaggtgg aagacacaga agagatggcc aacaaagatg gttgcctaaa acccaaagat 2581 gatgaagagt ttgtcgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac 2641 aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgatgaggag 2701 tacgatgagt acaaaagaat cagagaagaa aggaatggta agtactccat agaagagtac 2761 cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac cgaagaggac 2821 ttctgtgaag aagaagaggc caaaatccgg cagaggattt tcagaccaac aaggagacaa 2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaatcag gaagagaaac 2941 ccagaagatt tcaaacccaa gggaaagctg tgggctgatg atgacagaag tgttgactac 3001 aatgagaaac tcaactttga agccccacca agcatctggt cgcggatagt caactttggt 3061 tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc 3121 cagggtgcaa aagagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt 3181 gaattctgtc gactgagatt cccaaagcca atcagaactg atgtgacggg catgattcta 3241 gaagaaggtg cgcccgaggg gaccgtggtc acactgctca tcaagagacc aactggagag 3301 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca 3361 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagcat ggacctaggc 3421 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtt 3481 ataggggtcc atacggccgc tgcccgcgga ggaaacactg tcatatgtgc cacccaggga 3541 agtgagggag aggccacact cgaaggaggt gatagtaagg ggacatactg tggcgcacca 3601 atcttgggcc cagggagcgc tccgaagctc agcaccaaga ctaagttttg gagatcatcc 3661 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggcaa agaccctaga 3721 gtcaaaggtg gcccttcatt gcaacaagtt atgagagacc agctgaagcc attcacagaa 3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaagac catcatcaat 3841 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc 3901 cttgacaaga ccacctccag cggccacccg caccacatgc ggaaaaacga ctgttggaat 3961 ggggagtcct tcacaggaaa attggctgac caagcctcca aggccaacct aatgtttgaa 4021 gagggaaaga acatgacccc agtctacaca ggtgcactta aagatgagtt ggtgaagacc 4081 gataaagttt atggtaaggt caagaagagg cttctgtggg gttcagatct ggcgaccatg 4141 atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgtcacg 4201 ctccctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaagcac 4261 tccagatata gatatcacta tgatgctgac tattcccgat gggactcaac acaacaaagg 4321 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc 4381 cagatagttg cagaagacct cctctcccct agcgtgatgg atgtgggtga ctttcaaata 4441 tcaataagtg agggcctccc ctctggggtg ccttgtacct cccagtggaa ttccatcgcc 4501 cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt 4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac agacataaag 4621 ttggacccag agaggctgac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc 4681 gacaaaactg aaggacccct tgttatctct gaagacctgg atggtctaac attcctccgg 4741 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctt 4801 aggcaaatgt actggaccag gggtcccaac catgaagatc catttgaaac aatgatacca 4861 cactcccaaa gacccataca attgatgtct ttgctgggcg aggctgcact ccacggcccg 4921 gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat 4981 ttttatgtac ccagacaaga gccaatgttc agatggatga ggttctcaga tctgagcacg 5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc 5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc 5161 tctggagccc gttgttggtg ccgctattgc ggcacctgta gcgggccaac aaaatgtaat 5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtgtcccc 5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatc taaatcccta 5341 cttatctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat 5401 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt 5461 tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt 5521 taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta 5581 taatcaatca aatgacccca ctattaagtt gatagcaatg ttgtatacac cacttagggc 5641 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga ggccatcccc 5701 cgattttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta agccattctc 5761 tgtcccaatt ttaactgttg aggaaatgac caattcaaga ttccccattc ctttggaaaa 5821 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta gatgcacgac 5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtt aacatctgca ccttcagagg 5941 agatgtcacc catatcacag gtagccataa ctacacaatg aatttggctt ctcaaaattg 6001 gagcaattac gacccaacgg aagaaattcc agcccctcta gggactccag actttgtggg 6061 gaagattcaa ggcatgctca cccaaaccac aaggacagat ggctcaacac gcggccacaa 6121 agccacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag ttcaatttga 6181 aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt 6241 catccaagat ggtggcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagtta 6301 ctcaggcagg aacactccta atgtgcatct ggcccccgct gtagccccca cttttccggg 6361 tgagcaactc ctcttcttca gatccaccat gcccggatgc agcgggtacc ccaacatgga 6421 tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaagagg cagccccagc 6481 acaatccgat gtggctctgc taaggtttgt gaatccagac acaggtaggg ttttgtttga 6541 atgtaagctt cataaatcag gctatgttac agtggctcac actggccagc atgatttggt 6601 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc 6661 ccccatggga aatggagcgg ggcgtagacg tgcactataa tggctggagc tttctttgct 6721 ggattggcat ctgatgtcct tggctctggg cttggttccc ttatcaacgc tggggctggg 6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atcctttcaa 6841 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa 6901 attgaggcta ccaaaaagtt acaacaggaa atgatgaaag ttaaacaggc aatgctctta 6961 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa 7021 gctttggatt ggagcgggac aaggtactgg gctcctgatg ctaggactac aacatacaat 7081 gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc taatcttagg 7141 gatgctgtcc ctgctcgggg ttcctctagt aggtcttcta attcctctac tgctacttct 7201 gtgtactcaa atcaaactat ttcaacgaga cttggttcta cagctggttc tggtaccagt 7261 gtctcgagct tcccgtcaac tgcaaggact aggagctggg ttgaggatca aagtaggaat 7321 ttgtcacctt ttatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga 7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc 7441 gctttcaaca cgcgcaggca gccactcttc gctcacattc ataagcgag //