Typing tool
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Typing tool
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Complete norovirus genomes
| OM372477 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5097
ORF2: 5078..6700
ORF3: 6700..7489
LOCUS OM372477 7489 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS163 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372477
VERSION OM372477.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7489)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7489)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7489
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS163"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Oct-2018"
/note="genotype: GII"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP29334.1"
/translation="KMASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPK
QPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEE
TNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL
AKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTK
SASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA
KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARAS
GLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMS
DLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCL
KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRRQRKEERASLGLVT
GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKE
YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2622
/gene="ORF1"
/product="p22"
mat_peptide 2623..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6700
/gene="ORF2"
CDS 5078..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29335.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6700..>7489
/gene="ORF3"
CDS 6700..>7489
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29336.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIHKR"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcca acagcaacaa cgacatcgca
61 aaatcttcaa gtgacggtat gttttctaac atggctgtca cttttaagcg ggccctcggg
121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccgcg accacccaca
181 ccagaattgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga actagtggtc
241 tcttacagcg ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt cagacaaccg
301 gaagaaacca acacggcgtt cagtgtcccc ccactcaacc aaagggagag cagggacgcc
361 aaggagccat taactggaac aatcattgaa atgtgggatg gagaaatcta ccattacggc
421 ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccagcagc catcagcctc
481 gccaaggtcg agctggcacc gctctctctg ttctggagac ctgtatacac cccccagtac
541 cttatctctc cagacactct taggagatta catggagagt cattccccta cactgcattt
601 gataacaatt gctacgcctt ttgttgttgg gtattagacc taaacgactc atggctaagc
661 aggagaatga ttcagagaac aacaggcttc ttcaggccgt accaggattg gaacaggaaa
721 cccctcccca ctatggatga ttccaaatta aagaaggtag ccaacatatt cttgtgcact
781 ttgtcttcac tattcactag gcccattaag gacataatag ggaagttgaa acccctcaac
841 atccttaata ttctggctac atgtgattgg accttcgcag gcatagtgga atccttaata
901 ctcttagcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc
961 cccttgctag gtgattatga actgcaagga cccgaggacc ttgcagtgga actggtccca
1021 atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat cggaaagatg
1081 ctgtcatccg ctgcatccac tttgagagct tgtaaagacc ttggtgcata cggactggaa
1141 atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct
1201 atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg
1261 accaccctgc tcaaagacaa agacagcttg acaacctata tgagaaccct tgaccttgag
1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc
1381 aactctcttc tggcaaggat cgctgctgca cgctccctag tgcatcgagc gaaagaagag
1441 ctctccagca ggccgagacc tgtcgttgta atgatatcgg gaagaccagg tatagggaaa
1501 actcaccttg ccagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt
1561 gtgggcctta tcccacgcaa tggtgtcgat cactgggacg catacaaggg cgaaagagtt
1621 gtcctatggg acgactatgg aatgagcaac cccatccatg atgccctcag attgcaggag
1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa gggaaaagtc
1741 tttgacagtg atgccataat tatcaccacc aacctggcca acccagcacc actggattat
1801 gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag
1861 gtggagaagg cgaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagt
1921 cctgacttct cacacataaa actatcgttg gctccacagg ggggttttga caagaacggc
1981 aacaccccgc acggaaaggg aatcatgaag accctcacca ctggctccct catcgcccga
2041 gcatcagggt tactccatga gaggctagat gaatatgaat tgcaaggccc agccctcact
2101 actttcaact ttgaccgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag
2161 tatgggctga tggacacaat gagagttggg aaacagctca aggatgtcaa gactatgtca
2221 gacctcaaac aagcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt
2281 ggcacctaca cacttgaggc tgatggcaag ggcagtgtga aggttgacaa agtgcaaagt
2341 gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag atgcgctaga
2401 atcagatact atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg
2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag
2521 ccacaggtgg aagacacaga agagatggcc aacaaagatg gttgcctaaa acccaaagat
2581 gatgaagagt ttgtcgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac
2641 aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgatgaggag
2701 tacgatgagt acaaaagaat cagagaagaa aggaatggta agtactccat agaagagtac
2761 cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac cgaagaggac
2821 ttctgtgaag aagaagaggc caaaatccgg cagaggattt tcagaccaac aaggagacaa
2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaatcag gaagagaaac
2941 ccagaagatt tcaaacccaa gggaaagctg tgggctgatg atgacagaag tgttgactac
3001 aatgagaaac tcaactttga agccccacca agcatctggt cgcggatagt caactttggt
3061 tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc
3121 cagggtgcaa aagagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt
3181 gaattctgtc gactgagatt cccaaagcca atcagaactg atgtgacggg catgattcta
3241 gaagaaggtg cgcccgaggg gaccgtggtc acactgctca tcaagagacc aactggagag
3301 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca
3361 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagcat ggacctaggc
3421 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtt
3481 ataggggtcc atacggccgc tgcccgcgga ggaaacactg tcatatgtgc cacccaggga
3541 agtgagggag aggccacact cgaaggaggt gatagtaagg ggacatactg tggcgcacca
3601 atcttgggcc cagggagcgc tccgaagctc agcaccaaga ctaagttttg gagatcatcc
3661 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggcaa agaccctaga
3721 gtcaaaggtg gcccttcatt gcaacaagtt atgagagacc agctgaagcc attcacagaa
3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaagac catcatcaat
3841 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc
3901 cttgacaaga ccacctccag cggccacccg caccacatgc ggaaaaacga ctgttggaat
3961 ggggagtcct tcacaggaaa attggctgac caagcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgacccc agtctacaca ggtgcactta aagatgagtt ggtgaagacc
4081 gataaagttt atggtaaggt caagaagagg cttctgtggg gttcagatct ggcgaccatg
4141 atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgtcacg
4201 ctccctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaagcac
4261 tccagatata gatatcacta tgatgctgac tattcccgat gggactcaac acaacaaagg
4321 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc
4381 cagatagttg cagaagacct cctctcccct agcgtgatgg atgtgggtga ctttcaaata
4441 tcaataagtg agggcctccc ctctggggtg ccttgtacct cccagtggaa ttccatcgcc
4501 cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt
4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac agacataaag
4621 ttggacccag agaggctgac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc
4681 gacaaaactg aaggacccct tgttatctct gaagacctgg atggtctaac attcctccgg
4741 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctt
4801 aggcaaatgt actggaccag gggtcccaac catgaagatc catttgaaac aatgatacca
4861 cactcccaaa gacccataca attgatgtct ttgctgggcg aggctgcact ccacggcccg
4921 gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat
4981 ttttatgtac ccagacaaga gccaatgttc agatggatga ggttctcaga tctgagcacg
5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc
5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc
5161 tctggagccc gttgttggtg ccgctattgc ggcacctgta gcgggccaac aaaatgtaat
5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta cagtgtcccc
5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatc taaatcccta
5341 cttatctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat
5401 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt
5461 tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt
5521 taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta
5581 taatcaatca aatgacccca ctattaagtt gatagcaatg ttgtatacac cacttagggc
5641 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga ggccatcccc
5701 cgattttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta agccattctc
5761 tgtcccaatt ttaactgttg aggaaatgac caattcaaga ttccccattc ctttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta gatgcacgac
5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtt aacatctgca ccttcagagg
5941 agatgtcacc catatcacag gtagccataa ctacacaatg aatttggctt ctcaaaattg
6001 gagcaattac gacccaacgg aagaaattcc agcccctcta gggactccag actttgtggg
6061 gaagattcaa ggcatgctca cccaaaccac aaggacagat ggctcaacac gcggccacaa
6121 agccacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag ttcaatttga
6181 aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt
6241 catccaagat ggtggcacca cccaccgaaa tgaaccccaa cagtgggtgc tcccaagtta
6301 ctcaggcagg aacactccta atgtgcatct ggcccccgct gtagccccca cttttccggg
6361 tgagcaactc ctcttcttca gatccaccat gcccggatgc agcgggtacc ccaacatgga
6421 tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaagagg cagccccagc
6481 acaatccgat gtggctctgc taaggtttgt gaatccagac acaggtaggg ttttgtttga
6541 atgtaagctt cataaatcag gctatgttac agtggctcac actggccagc atgatttggt
6601 tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc
6661 ccccatggga aatggagcgg ggcgtagacg tgcactataa tggctggagc tttctttgct
6721 ggattggcat ctgatgtcct tggctctggg cttggttccc ttatcaacgc tggggctggg
6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atcctttcaa
6841 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
6901 attgaggcta ccaaaaagtt acaacaggaa atgatgaaag ttaaacaggc aatgctctta
6961 gagggtgggt tctctgagac agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa
7021 gctttggatt ggagcgggac aaggtactgg gctcctgatg ctaggactac aacatacaat
7081 gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc taatcttagg
7141 gatgctgtcc ctgctcgggg ttcctctagt aggtcttcta attcctctac tgctacttct
7201 gtgtactcaa atcaaactat ttcaacgaga cttggttcta cagctggttc tggtaccagt
7261 gtctcgagct tcccgtcaac tgcaaggact aggagctggg ttgaggatca aagtaggaat
7321 ttgtcacctt ttatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga
7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc
7441 gctttcaaca cgcgcaggca gccactcttc gctcacattc ataagcgag
//