Typing tool
|
Complete norovirus genomes
OM372476 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5097 ORF2: 5078..6700 ORF3: 6700..7506LOCUS OM372476 7548 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS161-2 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OM372476 VERSION OM372476.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7548) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7548) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7548 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS161-2" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Oct-2018" /note="genotype: GII" gene <1..5097 /gene="ORF1" CDS <1..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UJP29331.1" /translation="KMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPK QPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEE TNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL AKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW LNRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL AVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS GLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMS DLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEVANKDGCL KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS LFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT VATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGP GSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLA TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKE YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..987 /gene="ORF1" /product="p48" mat_peptide 988..2085 /gene="ORF1" /product="NTPase" mat_peptide 2086..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6700 /gene="ORF2" CDS 5078..6700 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP29332.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6700..7506 /gene="ORF3" CDS 6700..7506 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP29333.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTASTRLGSTAGSGTSVSNFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcta acagcaacaa cgacatcgca 61 aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaagcg ggccctcggg 121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccgcg accacccaca 181 ccagaattgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga actagtggtc 241 tcttacaacg ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt cagacaaccg 301 gaagaaacca atacggcgtt cagtgtcccc ccactcaacc aaagggagag cagggacgcc 361 aaggagccac taactggaac aatcattgaa atgtgggatg gagaaatcta ccactacggc 421 ctgtacgtgg aacgaggtct tatacttggt gtgcataagc caccagcagc cattagcctc 481 gccaaggtcg agctggcacc gctctctttg ttctggagac ctgtatacac cccccagtac 541 cttatctctc cagacactct taggagatta catggagagt cattccccta cactgcattt 601 gacaacaact gctatgcctt ttgttgttgg gtattagacc taaacgactc atggctaaac 661 aggagaatga ttcagagaac aacaggcttc ttcaggccgt accaggattg gaacaggaaa 721 cccctcccca ctatggatga ttccaaatta aagaaggtag ccaatatatt cttgtgcact 781 ttgtcttcac tattcaccag acccattaag gacataatag gaaagttgaa acctctcaac 841 atccttaaca ttctggctac atgtgattgg accttcgcag gcatagtgga atccttaata 901 ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc 961 cccttgctag gtgattatga actgcaagga cccgaggacc ttgcagtgga actggtccca 1021 atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaagat cggaaagatg 1081 ctgtcatccg ctgcatccac tttaagagct tgtaaagacc ttggtgcata cggactggaa 1141 atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct 1201 atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg 1261 accaccctgc tcaaagacaa agacagtttg gcaacctaca tgagaaccct tgaccttgag 1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc 1381 aactctcttc tggcaagaat cgctgctgca cgttccctag tgcatcgggc gaaagaagag 1441 ctctccagca ggccgagacc tgtcgttgta atgatatcgg gaagaccagg gatagggaaa 1501 actcaccttg ctagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt 1561 gtgggcctta tcccacgcaa tggtgtcgac cactgggacg catacaaggg cgaaagggtt 1621 gtcctatggg acgactatgg aatgagcaac cccatccatg atgcccttag gttgcaggag 1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc 1741 tttgacagtg atgccataat tatcactacc aacctggcca acccagcacc actggattat 1801 gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag 1861 gtggagaagg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagt 1921 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggt 1981 aacaccccgc atggaaaagg ggtcatgaag accctcacca ctggctccct catcgcccgg 2041 gcatcagggt tactccatga gaggctagat gaatatgaat tgcaaggccc agccctcacc 2101 actttcaact ttgaccgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag 2161 tatgggctga tggacacaat gagagttgga aaacagctca aggatgtcaa gactatgtca 2221 gacctcaaac aagcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt 2281 ggcacctaca cacttgaggc tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt 2341 gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag atgcgctaga 2401 atcaggtact atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg 2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag 2521 ccacaggtgg aagacacaga agaggtggcc aacaaagatg gttgcttaaa acccaaagat 2581 gatgaagagt ttgtcgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac 2641 aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgatgaagag 2701 tacgatgagt acaagagaat cagagaagaa aggaatggta agtactccat agaagagtac 2761 cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac cgaagaggac 2821 ttctgtgaag aagaagaggc caaaatccgg cagaggattt tcagaccaac aaggaaacaa 2881 cgcaaagaag agagggcttc tctcggcttg gtcacaggat ctgaaatcag gaagagaaac 2941 ccagaagact tcaaacccaa gggaaagctg tgggctgatg acgacagaag tgttgactac 3001 aatgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt 3061 tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc 3121 caaggtgcaa aggagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt 3181 gaattctgcc gattgagatt cccaaagcca atcagaaccg atgtgacggg catgattcta 3241 gaagaaggtg cgcctgaggg gaccgtggcc acactgctca tcaagagacc aactggagag 3301 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca 3361 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagtat ggacctaggc 3421 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtc 3481 attggggtcc atacggctgc tgcccgtgga ggaaacactg tcatatgtgc cacccaggga 3541 aatgagggag aggccacact tgaaggaggt gacagtaaag ggacatactg tggcgcgcca 3601 atcttgggcc cagggagcgc tccgaagctc agcaccaaga ctaagttttg gagatcatcc 3661 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggtaa agaccctaga 3721 gtcaaaggtg gcccttcatt gcaacaagtt atgagggacc agctgaagcc attcacagaa 3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat 3841 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc 3901 cttgacaaaa ccacctccag cggccacccg caccacatgc ggaaaaacga ctgttggaat 3961 ggggagtcct tcacaggaaa gttggctgac caagcctcca aggccaacct aatgtttgaa 4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgagtt ggtgaagacc 4081 gataaagttt atggtaaggt caagaagagg cttctatggg gctcagatct ggcgaccatg 4141 atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca 4201 ctccctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt cgagaagcac 4261 tccaggtata gatatcatta tgatgctgac tattcccggt gggactcaac acaacaaagg 4321 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc 4381 cagatagttg cagaagacct cctctcccct agcgtgatgg atgtgggtga ctttcaaata 4441 tcaataagtg agggcctccc ctctggggtg ccttgcacct cccagtggaa ttccatcgcc 4501 cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt 4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac ggacataaag 4621 ttggacccag agaggctaac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc 4681 gacaaaactg aaggacccct tgttatctct gaagacctgg atggtctgac attcctccgg 4741 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctt 4801 aggcaaatgt actggaccag gggtcccaac catgaagacc catttgaaac aatgatacca 4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggcccg 4921 gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat 4981 ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg 5041 tgggagggcg atcgcaatct tgctcccagt tttgtgaatg aagatggcgt cgagtgacgt 5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggtcatggc 5161 tctggagccc gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat 5221 tgacccctgg attagaaaca attttgtaca agcccctggt ggagagttta cagtatcccc 5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccctg ggccctgatc taaaccctta 5341 cttatctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat 5401 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt 5461 tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt 5521 taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta 5581 caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtatacac cacttagggc 5641 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga gaccatcccc 5701 cgactttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta aaccattctc 5761 tgtcccagtt ttgactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa 5821 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta ggtgcacgac 5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aatatctgca ccttcagagg 5941 agatgtcacc catattacag gtagtcataa ctatacaatg aatttggctt ctcaaaattg 6001 gagcaactac gacccaacag aagaaatccc agcccctcta gggactccag actttgtggg 6061 gaagattcaa ggcatgctta cccaaaccac aaggacagat ggctcaacac gcggccacaa 6121 agccacagtg tacactggga gcgccgactt cgctccaaaa ctgggtagag ttcaatttga 6181 aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt 6241 catccaagat ggtggcacca cccatcgaaa tgaaccccaa cagtgggtgc tcccaagtta 6301 ctcaggcagg aacactccta atgtgcatct ggcccccgct gtggccccca cttttccggg 6361 tgagcaactc ctcttcttta ggtccaccat gcccggatgc agcgggtacc ccaacatgga 6421 tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaggagg cagccccagc 6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga 6541 atgtaagctt cataaatcag gctatgttac agtggctcac actggccaac atgatttggt 6601 tattcccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc 6661 ccccatggga aatggagcgg ggcgtagacg tgcactataa tggctggagc tttctttgct 6721 ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg 6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atccttccaa 6841 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa 6901 attgaggcta ccaaaaggtt acaacaggaa atgatgaaag ttaagcaggc aatgctccta 6961 gagggtgggt tttctgagac agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa 7021 gccttggact ggagcgggac aaggtactgg gctcctgatg ctaggactac aacatacaat 7081 gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc taattttagg 7141 gatgctgtcc ctgctcgggg ttcctctagt aagtcttcta attcttctac tgctacttct 7201 gtgtattcaa accaaactgc ttcaacgaga cttggttcta cagctggttc tggcaccagt 7261 gtctcgaact tcccgtcaac tgcaaggact aggagctggg ttgaggatca aagcaggaat 7321 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcagg 7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc 7441 gctttcaaca cgcgcaggca gccactcttc gctcacattc gtaagcgagg ggagtcacgg 7501 gtgtaatgtg aaaagacaaa attgattatc tttcttttct ttagtgtc //