Typing tool
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Typing tool
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Complete norovirus genomes
| OM372476 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5097
ORF2: 5078..6700
ORF3: 6700..7506
LOCUS OM372476 7548 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS161-2 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION OM372476
VERSION OM372476.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7548)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7548)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7548
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS161-2"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Oct-2018"
/note="genotype: GII"
gene <1..5097
/gene="ORF1"
CDS <1..5097
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP29331.1"
/translation="KMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPK
QPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEE
TNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISL
AKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA
KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMS
DLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEVANKDGCL
KPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKE
YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2622
/gene="ORF1"
/product="p22"
mat_peptide 2623..3021
/gene="ORF1"
/product="VPg"
mat_peptide 3022..3564
/gene="ORF1"
/product="Pro"
mat_peptide 3565..5094
/gene="ORF1"
/product="RdRp"
gene 5078..6700
/gene="ORF2"
CDS 5078..6700
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29332.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6700..7506
/gene="ORF3"
CDS 6700..7506
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29333.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTASTRLGSTAGSGTSVSNFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgttgcta acagcaacaa cgacatcgca
61 aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaagcg ggccctcggg
121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccgcg accacccaca
181 ccagaattgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga actagtggtc
241 tcttacaacg ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt cagacaaccg
301 gaagaaacca atacggcgtt cagtgtcccc ccactcaacc aaagggagag cagggacgcc
361 aaggagccac taactggaac aatcattgaa atgtgggatg gagaaatcta ccactacggc
421 ctgtacgtgg aacgaggtct tatacttggt gtgcataagc caccagcagc cattagcctc
481 gccaaggtcg agctggcacc gctctctttg ttctggagac ctgtatacac cccccagtac
541 cttatctctc cagacactct taggagatta catggagagt cattccccta cactgcattt
601 gacaacaact gctatgcctt ttgttgttgg gtattagacc taaacgactc atggctaaac
661 aggagaatga ttcagagaac aacaggcttc ttcaggccgt accaggattg gaacaggaaa
721 cccctcccca ctatggatga ttccaaatta aagaaggtag ccaatatatt cttgtgcact
781 ttgtcttcac tattcaccag acccattaag gacataatag gaaagttgaa acctctcaac
841 atccttaaca ttctggctac atgtgattgg accttcgcag gcatagtgga atccttaata
901 ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc gatgatcgcc
961 cccttgctag gtgattatga actgcaagga cccgaggacc ttgcagtgga actggtccca
1021 atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaagat cggaaagatg
1081 ctgtcatccg ctgcatccac tttaagagct tgtaaagacc ttggtgcata cggactggaa
1141 atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa tgaactggct
1201 atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa caaccacatg
1261 accaccctgc tcaaagacaa agacagtttg gcaacctaca tgagaaccct tgaccttgag
1321 gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc
1381 aactctcttc tggcaagaat cgctgctgca cgttccctag tgcatcgggc gaaagaagag
1441 ctctccagca ggccgagacc tgtcgttgta atgatatcgg gaagaccagg gatagggaaa
1501 actcaccttg ctagggagct ggccaagaag atcgcggcct ccctcacagg ggaccagcgt
1561 gtgggcctta tcccacgcaa tggtgtcgac cactgggacg catacaaggg cgaaagggtt
1621 gtcctatggg acgactatgg aatgagcaac cccatccatg atgcccttag gttgcaggag
1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc
1741 tttgacagtg atgccataat tatcactacc aacctggcca acccagcacc actggattat
1801 gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga agcccctgag
1861 gtggagaagg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagt
1921 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggt
1981 aacaccccgc atggaaaagg ggtcatgaag accctcacca ctggctccct catcgcccgg
2041 gcatcagggt tactccatga gaggctagat gaatatgaat tgcaaggccc agccctcacc
2101 actttcaact ttgaccgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag
2161 tatgggctga tggacacaat gagagttgga aaacagctca aggatgtcaa gactatgtca
2221 gacctcaaac aagcactcaa gaacatcgcg atcaagaagt gccagatagt gtacaatggt
2281 ggcacctaca cacttgaggc tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt
2341 gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag atgcgctaga
2401 atcaggtact atgttaagtg cgtccaggag gcactgtatt ccatcatcca aatcgctggg
2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaata tacagaatct ctggtccaag
2521 ccacaggtgg aagacacaga agaggtggcc aacaaagatg gttgcttaaa acccaaagat
2581 gatgaagagt ttgtcgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac
2641 aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag tgatgaagag
2701 tacgatgagt acaagagaat cagagaagaa aggaatggta agtactccat agaagagtac
2761 cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac cgaagaggac
2821 ttctgtgaag aagaagaggc caaaatccgg cagaggattt tcagaccaac aaggaaacaa
2881 cgcaaagaag agagggcttc tctcggcttg gtcacaggat ctgaaatcag gaagagaaac
2941 ccagaagact tcaaacccaa gggaaagctg tgggctgatg acgacagaag tgttgactac
3001 aatgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt caactttggt
3061 tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca tgtcataccc
3121 caaggtgcaa aggagttctt cggagtccct atcaagcaaa tccagataca caagtcaggt
3181 gaattctgcc gattgagatt cccaaagcca atcagaaccg atgtgacggg catgattcta
3241 gaagaaggtg cgcctgaggg gaccgtggcc acactgctca tcaagagacc aactggagag
3301 ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca ggggcgcaca
3361 gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagtat ggacctaggc
3421 acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga ctacgtggtc
3481 attggggtcc atacggctgc tgcccgtgga ggaaacactg tcatatgtgc cacccaggga
3541 aatgagggag aggccacact tgaaggaggt gacagtaaag ggacatactg tggcgcgcca
3601 atcttgggcc cagggagcgc tccgaagctc agcaccaaga ctaagttttg gagatcatcc
3661 acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggtaa agaccctaga
3721 gtcaaaggtg gcccttcatt gcaacaagtt atgagggacc agctgaagcc attcacagaa
3781 cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac catcatcaat
3841 gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc
3901 cttgacaaaa ccacctccag cggccacccg caccacatgc ggaaaaacga ctgttggaat
3961 ggggagtcct tcacaggaaa gttggctgac caagcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgagtt ggtgaagacc
4081 gataaagttt atggtaaggt caagaagagg cttctatggg gctcagatct ggcgaccatg
4141 atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca
4201 ctccctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt cgagaagcac
4261 tccaggtata gatatcatta tgatgctgac tattcccggt gggactcaac acaacaaagg
4321 gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc acacctggcc
4381 cagatagttg cagaagacct cctctcccct agcgtgatgg atgtgggtga ctttcaaata
4441 tcaataagtg agggcctccc ctctggggtg ccttgcacct cccagtggaa ttccatcgcc
4501 cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc tgatatcatt
4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac ggacataaag
4621 ttggacccag agaggctaac agcaaaactc aaggagtacg ggctgaaacc aacccgcccc
4681 gacaaaactg aaggacccct tgttatctct gaagacctgg atggtctgac attcctccgg
4741 agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag ttcaattctt
4801 aggcaaatgt actggaccag gggtcccaac catgaagacc catttgaaac aatgatacca
4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggcccg
4921 gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg tggcatggat
4981 ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg
5041 tgggagggcg atcgcaatct tgctcccagt tttgtgaatg aagatggcgt cgagtgacgt
5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggtcatggc
5161 tctggagccc gttgttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat
5221 tgacccctgg attagaaaca attttgtaca agcccctggt ggagagttta cagtatcccc
5281 tagaaacgct ccaggtgaaa tactatggag cgcgcccctg ggccctgatc taaaccctta
5341 cttatctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat
5401 tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc caccaaattt
5461 tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag tagtagatgt
5521 taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt tctatcatta
5581 caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtatacac cacttagggc
5641 taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga gaccatcccc
5701 cgactttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta aaccattctc
5761 tgtcccagtt ttgactgttg aggagatgac caattcaaga ttccccattc ctttggaaaa
5821 gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta ggtgcacgac
5881 tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aatatctgca ccttcagagg
5941 agatgtcacc catattacag gtagtcataa ctatacaatg aatttggctt ctcaaaattg
6001 gagcaactac gacccaacag aagaaatccc agcccctcta gggactccag actttgtggg
6061 gaagattcaa ggcatgctta cccaaaccac aaggacagat ggctcaacac gcggccacaa
6121 agccacagtg tacactggga gcgccgactt cgctccaaaa ctgggtagag ttcaatttga
6181 aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt
6241 catccaagat ggtggcacca cccatcgaaa tgaaccccaa cagtgggtgc tcccaagtta
6301 ctcaggcagg aacactccta atgtgcatct ggcccccgct gtggccccca cttttccggg
6361 tgagcaactc ctcttcttta ggtccaccat gcccggatgc agcgggtacc ccaacatgga
6421 tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaggagg cagccccagc
6481 acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg ttttgtttga
6541 atgtaagctt cataaatcag gctatgttac agtggctcac actggccaac atgatttggt
6601 tattcccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt acacgcttgc
6661 ccccatggga aatggagcgg ggcgtagacg tgcactataa tggctggagc tttctttgct
6721 ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc tggggctggg
6781 gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc atccttccaa
6841 tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct ccaagcacaa
6901 attgaggcta ccaaaaggtt acaacaggaa atgatgaaag ttaagcaggc aatgctccta
6961 gagggtgggt tttctgagac agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa
7021 gccttggact ggagcgggac aaggtactgg gctcctgatg ctaggactac aacatacaat
7081 gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc taattttagg
7141 gatgctgtcc ctgctcgggg ttcctctagt aagtcttcta attcttctac tgctacttct
7201 gtgtattcaa accaaactgc ttcaacgaga cttggttcta cagctggttc tggcaccagt
7261 gtctcgaact tcccgtcaac tgcaaggact aggagctggg ttgaggatca aagcaggaat
7321 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcagg
7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc
7441 gctttcaaca cgcgcaggca gccactcttc gctcacattc gtaagcgagg ggagtcacgg
7501 gtgtaatgtg aaaagacaaa attgattatc tttcttttct ttagtgtc
//