Typing tool
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Typing tool
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Complete norovirus genomes
| OM368933 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5085
ORF2: 5066..6688
ORF3: 6688..7494
LOCUS OM368933 7497 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS159 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM368933
VERSION OM368933.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7497)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7497)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7497
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS159"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Oct-2018"
/note="genotype: GII.4"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJO77048.1"
/translation="NDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPP
KEIPPRPPLPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTA
FSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE
LAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLN
ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL
VPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASP
DIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIA
ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQ
ALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIR
YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKD
DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI
RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT
STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATL
LIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAP
KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF
TGKLADQASKANLMFEEGKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIR
CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
DVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
FETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..975
/gene="ORF1"
/product="p48"
mat_peptide 976..2073
/gene="ORF1"
/product="NTPase"
mat_peptide 2074..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6688
/gene="ORF2"
CDS 5066..6688
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJO77049.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6688..7494
/gene="ORF3"
CDS 6688..7494
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJO77050.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 aacgacgctt ccgctgccgc tgttgccaac agcaacaacg acatcgcaaa atcttcaagt
61 gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc gcggcctaaa
121 cagccgcccc cgaaggaaat accacccaga cccccgctac cacccacacc agaattggtc
181 aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtctc ttataacgcc
241 aaagatggcg tttccggact gcctgagctc accactgtca gacaaccgga agaaaccaac
301 acggcgttca gtgtcccccc tctcaaccaa agggagagca gggacgccaa ggagccacta
361 actggaacaa tcattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggaa
421 cgaggtctta tacttggtgt gcacaagcca ccggcagcca tcagcctcgc taaggtcgag
481 ctggcaccgc tctctttgtt ctggagacct gtatacaccc cccaatacct tatctctcca
541 gacactctta ggagattaca tggagagtca ttcccctaca ctgcatttga caacaattgc
601 tacgcctttt gttgttgggt attagaccta aacgactcat ggctaagcag gagaatgatt
661 cagagaacaa caggcttctt caggccgtac caggattgga acaggaaacc ccttcccact
721 atggatgatt ccaaattaaa gaaggtagcc aacatattct tgtgcacttt gtcttcacta
781 ttcaccaggc ctattaagga cataataggg aagttgaaac ctctcaacat ccttaatatt
841 ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact cttggcagaa
901 ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc cttgctaggt
961 gattatgaac tgcaaggacc cgaggacctt gcagtggaac tggtcccaat agtgatgggg
1021 gggataggtt tggtgctagg atttaccaaa gagaagatcg gaaagatgct gtcatccgct
1081 gcatccactt taagagcttg taaagacctt ggtgcatacg gactggaaat cttaaaattg
1141 gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggctat ggtgagatcc
1201 atcgaggatg cagtactaga cctcgaggca attgaaaaca accacatgac caccctgctc
1261 aaagacaaag acagcttgac aacctacatg aggacccttg atcttgagga ggagaaagcc
1321 agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa ctctcttctg
1381 gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct ttccagcagg
1441 ccgagacctg tcgttgtaat gatatcggga agaccaggga tagggaaaac tcaccttgcc
1501 agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt gggcctcatc
1561 ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagggttgt cctatgggac
1621 gactatggaa tgagcaaccc catccatgat gcccttaggt tgcaggagct tgctgacact
1681 tgccccctca cgctaaactg tgacagaatt gagaacaaag gaaaagtctt tgacagtgat
1741 gccataatta tcaccaccaa cctggccaac ccagcaccac tggattatgt caactttgaa
1801 gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt ggagaaggca
1861 aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc tgacttctca
1921 cacataaaac tgtcattggc tccacagggt ggttttgaca agaacggcaa caccccgcat
1981 ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc atcggggtta
2041 ctccatgaga ggctagatga atatgaattg caaggcccag ccctcaccac tttcaacttt
2101 gaccgcaaca agatacttgc ttttagacag cttgctgctg aaaacaagta tgggctgatg
2161 gacacaatga gagttggaaa gcagctcaag gatgtcaaga ctatgtcaga cctcaaacaa
2221 gcactcaaga acatcgcaat caagaagtgc cagatagtgt acaatggtgg cacctacaca
2281 cttgaggctg atggcaaggg cagtgtgaaa gttgacaaag tgcaaagtgc cactgtgcag
2341 accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat cagatactat
2401 gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc tgcattcgtc
2461 accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc acaggtggaa
2521 gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga tgaagagttt
2581 gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccggccgt
2641 ggcaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta cgatgagtac
2701 aagagaatca gagaagaaag gaatggtaag tactccatag aagagtacct tcaggacaga
2761 gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt ctgtgaagaa
2821 gaagaggcca aaatccggca gaggattttc agaccaacaa ggaaacaacg taaagaagag
2881 agggcttctc tcggcttggt cacaggctct gaaatcagga agagaaaccc agaagacttc
2941 aaacccaagg gaaagctgtg ggctgatgac gacagaagtg ttgactacaa tgagaaactc
3001 aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc aggctggggc
3061 ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca aggtgcaaag
3121 gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga attctgccga
3181 ttgagattcc caaagccaat cagaaccgat gtgacgggca tgattctaga agaaggtgcg
3241 cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct catgcctctg
3301 gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt tggagggcaa
3361 atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc
3421 gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat aggggtccat
3481 acggctgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag tgagggagag
3541 gccacacttg aaggaggtga cagtaagggg acatactgtg gcgcgccaat cttgggccca
3601 gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac aacaccactc
3661 ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc
3721 ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa
3781 ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa
3841 acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct tgacaaaacc
3901 acctccagcg gccatccgca ccacatgcgg aaaaacgact gttggaatgg ggagtccttc
3961 acaggaaagt tggctgacca agcctccaag gccaacctaa tgtttgaaga gggaaagaac
4021 atgactccaa tctacacagg tgcacttaaa gatgagttgg taaagaccga taaagtttat
4081 ggtaaggtca agaagaggct tctatggggt tcagatctgg cgaccatgat acggtgcgcc
4141 cgagcttttg gaggcctcat ggatgaactc aaggcacact gtgtcacact ccctgtcaga
4201 gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc cagatataga
4261 tatcattatg atgctgacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca
4321 gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca
4381 gaagacctcc tttcccctag cgtgatggat gtgggtgact ttcaaatatc aataagtgag
4441 ggtctcccct ctggggtgcc ttgcacctcc cagtggaatt ccatcgccca ctggctcctc
4501 actctgtgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc
4561 cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag
4621 aggctaacag caaaactcaa ggagtacgga ctgaaaccaa cccgtcccga caaaactgaa
4681 ggaccccttg tcatctctga agacctggat ggtctgacat tcctccggag aactgtgacc
4741 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac
4801 tggaccaggg gtcccaacca tgaagaccca tttgaaacaa tgataccaca ctcccagaga
4861 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc
4921 aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt ttacgtaccc
4981 agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgtca acccatctga
5101 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt
5161 tgttggtgcc gccatcgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
5221 tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc
5281 aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctact tgtctcattt
5341 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa
5401 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg
5461 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga
5521 acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa
5581 tgaccccacc attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg
5641 ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatctcccg attttgactt
5701 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt
5761 gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg
5821 tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct
5881 cctaggcacc acccaactgt ctcctgtcaa catctgcacc tttagaggag atgtcaccca
5941 tatcacaggt agtcataact atacaatgaa tttggcttct caaaattgga gcaactacga
6001 cccaacagaa gaaatcccag cccctctagg gactccagac tttgtgggga agattcaagg
6061 tatgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta
6121 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa
6181 caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg
6241 tggcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcaggaa
6301 cactcctaat gtgcatctag cccccgctgt ggccccaact tttccgggtg agcaactcct
6361 cttctttaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggattgtct
6421 gctcccccag gaatgggtgc agtacttcta ccaggaggca gccccagcac aatctgatgt
6481 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca
6541 caaatcaggc tatgttacag tggctcacac cggccaacat gatttggtta tcccccccaa
6601 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa
6661 tggagcgggg cgtagacgtg cactataatg gctggagctt tctttgctgg attggcatct
6721 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa
6781 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat
6841 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggctacc
6901 aaaaggttac aacaggaaat gatgaaagtt aagcaggcag tgctcctaga gggtgggttc
6961 tctgagacag atgcagcccg cggggcaatt aacgccccta tgacaaaagc cttggactgg
7021 agcgggacaa ggtactgggc tcctgatgct aggactacaa catacaatgc aggccgcttt
7081 tccacccccc aaccatcggg ggcgctgcca ggaagagcta attttaggga tgctgtccct
7141 gctcggggtt cctctagtaa gtcttctaat tcttctatcg ctacttctgt gtattcaaat
7201 caaactactt caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc
7261 ccgacaactg caaggactag gagctgggtt gaggaccaaa gtaggaattt gtcacctttc
7321 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcaggtc ctctagccaa
7381 ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg
7441 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggt gtaatgt
//