Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OL943802 | GII.17 | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7486
LOCUS OL943802 7546 bp RNA linear VRL 25-DEC-2021
DEFINITION Norovirus GII isolate Hu/US/2013/GII.17[P31]/Guatemala0082-GII17,
complete genome.
ACCESSION OL943802
VERSION OL943802.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7546)
AUTHORS Montmayeur,A.M., Lopez,M.R., Chhabra,P. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7546
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2013/GII.17[P31]/Guatemala0082-GII17"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Guatemala"
/collection_date="05-Jun-2013"
/note="genotype: GII.17[P31]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UHH89718.1"
/translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPD
EINTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
RAKVELTPLSLFWRPVYTPQYLISPDTLRKLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGR
LKPLNILNILATCDWTFASVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVER
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM
PDLKQALKNVAIRKCQIVYGGSTYTLEADGKGSVKIDKVQSAAVQTNNEIAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMASKDGC
PKPKEDEEFVISSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UHH89719.1"
/translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPVPVDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLQPSGICAFRGKITADVRPNHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
GVASQRNVQPHPNTTRAHEAVISTTSSQFVPKLGSINFGSTSDDFTVGQPTKFTPVGI
KIEDGHAFDQWTLPRYSGHLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGIID
CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UHH89720.1"
/translation="MAGAFIAGLAGDMLTNTVGSLANAGANAITQKIDFENNKQLQSA
SFQHDKDMLQAQVAATKQLQAEMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG
TRYWAPNSTRTTGYSGQFTSAPVHMPTKTIQPAPVKRTQPLSSSSGSIYSLSTQSTVL
TKPSSGSSSVSSASTQSTKLSSVSSMDRTANWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTPAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggtgtgct ctctagcatg gctgtcactt ttaaacgggc
121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacggcc
181 acccacacca gagttggtca aaaagatccc tcctccccca cccaacgggg aggatgaacc
241 agtggtttcc tatagcgcca aagatggtgt ttccggactg cctgagctca ccactgtcag
301 acaaccggat gaaattaaca cggcgttcag tgttcccccg ctcaaccaaa gggagaacag
361 ggacgccaag gaaccattaa ctggaacaat tattgaaatg tgggatggag aaatctacca
421 ttacggcctg tacgtggaac gaggtcttat acttggtgtg cataagccac cggcggccat
481 cagccgtgcc aaagttgagc taacaccact ctctctgttc tggagacctg tatacacacc
541 ccagtatctc atctccccag acactctcag gaaactacat ggggagtcat tcccctacac
601 tgcatttgac aacaattgct acgccttctg ttgttgggta ttagacctaa acgactcatg
661 gctaagcagg agaatgattc agagaacaac aggtttcttt agaccatacc aggattggaa
721 caggaaaccc ctccccacta tggatgattc caaattgaag aaggtagcca acatattctt
781 atgcaccttg tcttcactat tcaccaggcc cattaaggac ataataggaa ggctgaaacc
841 tcttaacatc cttaacattc tggctacatg tgattggacc ttcgcaagcg tagtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggag attatgaact gcaaggacct gaggaccttg cagtagaact
1021 ggtcccagtg gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaattgg
1081 aaagatgcta tcatccgctg catctacttt gagagcctgt aaagaccttg gtgcatacgg
1141 actggaaatt ttaaaactag tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtgttagac ctcgaagcaa ttgaaaacaa
1261 tcacatgacc accctgctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcta gaaaactctc aaccaaatct gcttcacccg atattgtggg
1381 cacaatcaac gctcttctgg caagaatcgc tgccgcacgc tccctagtgc atcgggcgaa
1441 agaagagctc tccagcaggc cgagacctgt cgttgtgatg atatcgggga aaccagggat
1501 aggaaaaact caccttgcca gggagttggc caagaagatc gcagcctccc tcacagggga
1561 ccagcgtgtg ggtcttatcc cgcgcaatgg tgttgaccat tgggacgcat acaagggtga
1621 aagagtagtc ctatgggacg actatggaat gagcaacccc atccatgacg ccctcagatt
1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaagg
1741 gaaagttttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact
1801 ggactatgtc aacttcgaag cgtgctcgag acgcattgac ttcctcgtgt acgcagaagc
1861 tccggaggtg gaaagggcaa agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagccct gacttctcac acataaaact gtcattggct ccacagggtg gttttgacaa
1981 gaatggcaac accccgcatg gaaaaggtgt catgaagacc ctcaccactg gctccctcat
2041 agcccgagca tcagggttac tccatgagag actagatgaa tatgaactgc aaggtccagc
2101 cctcaccact ttcaactttg atcgcaacaa gatacttgct tttagacagc ttgctgctga
2161 aaacaagtat gggctgatgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 tatgccagac ctcaaacaag cactcaagaa tgtcgcgatc aggaagtgcc agatagtgta
2281 cggtggtagc acctacacac ttgaggccga tggtaagggt agtgtgaaaa ttgacaaagt
2341 gcaaagtgct gctgtgcaaa ctaacaatga aatagccggc gccctacacc acctaaggtg
2401 cgccagaatc agatactatg ttaagtgtgt ccaggaggca ctgtattcca tcattcaaat
2461 cgctggggct gcattcgtca ccacgcgcat cgctaagcgc atgaacatac agaatctctg
2521 gtccaagcca caggtggaag acacagaaga gatggccagc aaagatggtt gcccaaaacc
2581 caaagaggat gaagagtttg ttatttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaagaacaaa tctggtcgtg gcaagaagca cacagccttc tcaagcaaag ggctcagtga
2701 cgaggagtac gatgagtaca agagaatcag agaagaaagg aatggcaagt attccataga
2761 agagtaccta caggacagag acaagtacta tgaggaggtg gctattgcca gggcaaccga
2821 agaagacttc tgtgaagaag aagaggccaa aatccggcag agaattttca gaccaacaag
2881 gaagcaacgc aaagaagaga gggcctccct cggcttggtc acaggctctg aaatcaggaa
2941 gagaaaccca gaagacttca agcccaaggg aaagctgtgg gctgatgatg acagaagtgt
3001 tgactacaat gagaaactca actttgaggc cccgccaagc atctggtcgc ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccatgt
3121 cataccccag ggtgcaaaag agttcttcgg agtccctatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgtcgat tgagattccc aaaaccaatc agaactgatg tgacgggcat
3241 gattctagaa gaaggtgcgc ccgaagggac cgtggccaca ctgctcatca agagaccaac
3301 tggagaactc atgcctctgg cagccagaat gggaacccat gcaaccatga agattcaggg
3361 gcgcacagtt ggaggacaaa tgggtatgct cctgacaggg tccaacgcca agagcatgga
3421 cctaggcaca acaccaggtg actgcggctg tccctacatc tacaagagag ggaatgacta
3481 cgtggccata ggggtccaca cggccgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gagggagaag ccacacttga aggaggtgac aacaaaggaa catactgcgg
3601 tgcaccaatc ttgggcccag ggagtgctcc aaaactcagc accaagacta agttttggag
3661 atcatccaca acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga
3721 tcccagagtc aaaggtggcc cttcattaca acaagttatg agggatcagc taaagccatt
3781 cacagaaccc agaggcaaac caccaagacc aaatgtgttg gaagctgcta agaaaaccat
3841 catcaacgtt cttgagcaaa caattgaccc acctcaaaaa tggtcattcg cgcaagcttg
3901 cgcatccctt gacaaaacca cctccagcgg ccacccgcac catatgcgga aaaacgattg
3961 ttggaatggg gagtccttca caggaagatt ggcagatcag gcctccaagg ccaacctaat
4021 gtttgaagag ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgaattggt
4081 aaagactgac aaaatttatg gtaagatcaa gaagaggctt ctgtggggct cagacctggc
4141 gaccatgata cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacactg
4201 tgtcaccctt cctgtcagag ttggtatgaa catgaatgaa gatggcccca tcatctttga
4261 gaaacactcc agatataaat atcactatga tgctgattat tcccggtggg actcgacaca
4321 acaaagggat gtgctagcag cagcactaga aatcatggtt aaattctctc cagaaccaca
4381 cctggctcag gtagttgcag aagacctcct ctcccctagt gtaatggatg taggtgactt
4441 tcaaatatca ataagtgagg ggctcccctc tggggtgcct tgcacctccc agtggaactc
4501 catcgcccac tggctcctca ctctttgtgc actctctgaa gtcacggacc tgtcccctga
4561 cattatccag gccaactccc ttttctcctt ctatggtgat gatgagattg tgagcacaga
4621 cataaagttg gacccagaga agttgacagc aaaactcaag gagtacgggc tgaaaccaac
4681 ccgtcccgac aaaactgaag gaccccttgt tatctctgaa gatctggatg gcctgacatt
4741 cctccggagg actgtgaccc gtgacccagc tggttggttt ggaaaattgg aacaaagctc
4801 aattctcagg caaatgtact ggactagggg tcccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaact gatgtcctta ctgggcgagg ctgcactcca
4921 cggcccagca ttttacagca aaattagtaa attggttatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcagg tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgcca cgggcctcgt cccagagatc aacaacgaga
5161 cccttcctct ggaaccggta gcgggtgcag ctattgccgc gcctgttact ggccaaaata
5221 atataattga tccctggatt agaacaaatt ttgtacaagc acccaatggg gagttcacag
5281 tctcacccag aaactctcct ggagaaattc ttctaaattt ggaattgggt cctgatttaa
5341 atccatatct ggcacattta tctagaatgt ataatgggta tgctggtggc gtagaagttc
5401 aagtcctcct tgcagggaat gcgttcactg caggaaagat tctcttcgct gccgtaccac
5461 caaatttccc agttgaattc ttgagtcctg cacaaatcac catgttgcca catttaatag
5521 ttgatgttag aacccttgaa cccatcatga taccactccc tgatgtcagg aacaccttct
5581 ttcactacaa taatcaacct gccaatcgca tgcgattggt agccatgttg tatacccccc
5641 tgagatctaa tggttctggt gatgatgttt tcacagtgtc atgtagagtg ctaactagac
5701 ccaccccaga ttttgagttt acatacttgg tccccccttc ggtagagtct aagactaaac
5761 ccttttctct gcccatacta accatctctg aattgaccaa ttcaagattt cctgtaccgg
5821 tggattcatt gttcacagcc caaaacaata atcttaatgt tcaatgtcaa aatggtcgct
5881 gcacattaga tggtgagttg cagggaacca ctcagttgca accatcaggc atctgcgcct
5941 tcagaggcaa aataacggca gatgtacgtc caaaccacga tgacagatgg catatgcaac
6001 tgacaaatct caatggaacc cccttcgacc caacagagga tgtaccagct ccactgggca
6061 ccccagattt cacaggcctt ctcttcggag tggcaagcca aagaaatgtt caaccccacc
6121 caaacactac cagggcacat gaagccgtga tatccacaac cagttcacag tttgtgccaa
6181 aattaggatc aatcaacttt ggtagcacaa gtgatgattt cactgttggc cagcccacaa
6241 aattcacacc agttggcatc aagattgagg atggacatgc atttgatcaa tggaccctac
6301 ccaggtattc aggccattta actcttaata tgaatcttgc cccacctgtt gctccaaatt
6361 tccctggtga acaactactc ttctttaggt caaatgtccc ctgtgccggt ggcattagtg
6421 atggtatcat cgactgcctg ttgcctcagg agtggataca gcacttctac caggagtctg
6481 ctccctccca atctgatgtg gccctgatca gatacgtcaa ccccgacacg ggccgcacac
6541 ttttcgaggc gaaactccat agaacaggct acatcactgt tgcccattca ggtgattatc
6601 cccttgttgt cccctccaat ggatacttta gatttgattc ttgggtgaac caattttatt
6661 cacttgcccc catgggaact gggaatgggc gcagacgggt gcagtaatgg caggagcttt
6721 catagcaggt ctagcaggtg acatgctcac caacacagtt ggctcactgg cgaacgccgg
6781 ggccaatgcc atcactcaaa agatagactt tgaaaacaac aaacagctcc aatctgcctc
6841 cttccaacat gacaaagaca tgctccaagc acaagtggct gccaccaagc agttacaggc
6901 tgagatgatc gccatcaagc aggggatact gaccgcgggc ggcttttccc ccactgatgc
6961 ggcgagagga gcagtgggtg cacccatgac caaagtcctc gactggtctg gtactcgtta
7021 ctgggctcca aactccacga ggacaacagg ttactcaggg cagtttacat cagcaccagt
7081 gcatatgccc acaaaaacaa ttcagcctgc tcctgttaaa aggactcaac ctctttcttc
7141 ctcttcaggt agtatctata gtctttcaac acagagcact gtcttgacca agccttcttc
7201 aggctcttct tctgtttctt ctgcttctac acaatctaca aaattgagtt cagtttcttc
7261 aatggataga acagcaaatt gggtaaatca gcaaagaagc ctcagcccct tcatgagtgg
7321 tgcactcaac atatctcatg taacacctcc atcgagcagg gcttcgagtt cggggacagt
7381 ctcaactgta cccaaagaag ttttggactc ctggacacct gcattcaaca cacgcagaca
7441 gccgctcttc gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aagaatcaat
7501 tagttttaat taaattgtat tggatttaat tttaattgga tctttt
//