Typing tool
|
Complete norovirus genomes
OL943802 | GII.17 | ||
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GII.P31 |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7486LOCUS OL943802 7546 bp RNA linear VRL 25-DEC-2021 DEFINITION Norovirus GII isolate Hu/US/2013/GII.17[P31]/Guatemala0082-GII17, complete genome. ACCESSION OL943802 VERSION OL943802.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7546) AUTHORS Montmayeur,A.M., Lopez,M.R., Chhabra,P. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7546 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/US/2013/GII.17[P31]/Guatemala0082-GII17" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="Guatemala" /collection_date="05-Jun-2013" /note="genotype: GII.17[P31]" gene 5..5104 /gene="ORF1" CDS 5..5104 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UHH89718.1" /translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSSMAVTFKRALGARP KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPD EINTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS RAKVELTPLSLFWRPVYTPQYLISPDTLRKLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGR LKPLNILNILATCDWTFASVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVER AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM PDLKQALKNVAIRKCQIVYGGSTYTLEADGKGSVKIDKVQSAAVQTNNEIAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMASKDGC PKPKEDEEFVISSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 5..994 /gene="ORF1" /product="p48" mat_peptide 995..2092 /gene="ORF1" /product="NTPase" mat_peptide 2093..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3028 /gene="ORF1" /product="VPg" mat_peptide 3029..3571 /gene="ORF1" /product="Pro" mat_peptide 3572..5101 /gene="ORF1" /product="RdRp" gene 5085..6707 /gene="ORF2" CDS 5085..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UHH89719.1" /translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTISELTNSRFPVPVDSLFTAQNNNLNVQCQNGRCTLDGELQGTT QLQPSGICAFRGKITADVRPNHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF GVASQRNVQPHPNTTRAHEAVISTTSSQFVPKLGSINFGSTSDDFTVGQPTKFTPVGI KIEDGHAFDQWTLPRYSGHLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGIID CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6707..7486 /gene="ORF3" CDS 6707..7486 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UHH89720.1" /translation="MAGAFIAGLAGDMLTNTVGSLANAGANAITQKIDFENNKQLQSA SFQHDKDMLQAQVAATKQLQAEMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG TRYWAPNSTRTTGYSGQFTSAPVHMPTKTIQPAPVKRTQPLSSSSGSIYSLSTQSTVL TKPSSGSSSVSSASTQSTKLSSVSSMDRTANWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTPAFNTRRQPLFAHLRVRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga 61 catcgcaaaa tcttcaagtg acggtgtgct ctctagcatg gctgtcactt ttaaacgggc 121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacggcc 181 acccacacca gagttggtca aaaagatccc tcctccccca cccaacgggg aggatgaacc 241 agtggtttcc tatagcgcca aagatggtgt ttccggactg cctgagctca ccactgtcag 301 acaaccggat gaaattaaca cggcgttcag tgttcccccg ctcaaccaaa gggagaacag 361 ggacgccaag gaaccattaa ctggaacaat tattgaaatg tgggatggag aaatctacca 421 ttacggcctg tacgtggaac gaggtcttat acttggtgtg cataagccac cggcggccat 481 cagccgtgcc aaagttgagc taacaccact ctctctgttc tggagacctg tatacacacc 541 ccagtatctc atctccccag acactctcag gaaactacat ggggagtcat tcccctacac 601 tgcatttgac aacaattgct acgccttctg ttgttgggta ttagacctaa acgactcatg 661 gctaagcagg agaatgattc agagaacaac aggtttcttt agaccatacc aggattggaa 721 caggaaaccc ctccccacta tggatgattc caaattgaag aaggtagcca acatattctt 781 atgcaccttg tcttcactat tcaccaggcc cattaaggac ataataggaa ggctgaaacc 841 tcttaacatc cttaacattc tggctacatg tgattggacc ttcgcaagcg tagtggaatc 901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgccccc ttactaggag attatgaact gcaaggacct gaggaccttg cagtagaact 1021 ggtcccagtg gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaattgg 1081 aaagatgcta tcatccgctg catctacttt gagagcctgt aaagaccttg gtgcatacgg 1141 actggaaatt ttaaaactag tcatgaaatg gttcttccca aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtgttagac ctcgaagcaa ttgaaaacaa 1261 tcacatgacc accctgctca aagacaaaga cagcttggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcta gaaaactctc aaccaaatct gcttcacccg atattgtggg 1381 cacaatcaac gctcttctgg caagaatcgc tgccgcacgc tccctagtgc atcgggcgaa 1441 agaagagctc tccagcaggc cgagacctgt cgttgtgatg atatcgggga aaccagggat 1501 aggaaaaact caccttgcca gggagttggc caagaagatc gcagcctccc tcacagggga 1561 ccagcgtgtg ggtcttatcc cgcgcaatgg tgttgaccat tgggacgcat acaagggtga 1621 aagagtagtc ctatgggacg actatggaat gagcaacccc atccatgacg ccctcagatt 1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaagg 1741 gaaagttttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact 1801 ggactatgtc aacttcgaag cgtgctcgag acgcattgac ttcctcgtgt acgcagaagc 1861 tccggaggtg gaaagggcaa agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc 1921 tttcagccct gacttctcac acataaaact gtcattggct ccacagggtg gttttgacaa 1981 gaatggcaac accccgcatg gaaaaggtgt catgaagacc ctcaccactg gctccctcat 2041 agcccgagca tcagggttac tccatgagag actagatgaa tatgaactgc aaggtccagc 2101 cctcaccact ttcaactttg atcgcaacaa gatacttgct tttagacagc ttgctgctga 2161 aaacaagtat gggctgatgg acacaatgag agttggaaaa cagctcaagg atgtcaagac 2221 tatgccagac ctcaaacaag cactcaagaa tgtcgcgatc aggaagtgcc agatagtgta 2281 cggtggtagc acctacacac ttgaggccga tggtaagggt agtgtgaaaa ttgacaaagt 2341 gcaaagtgct gctgtgcaaa ctaacaatga aatagccggc gccctacacc acctaaggtg 2401 cgccagaatc agatactatg ttaagtgtgt ccaggaggca ctgtattcca tcattcaaat 2461 cgctggggct gcattcgtca ccacgcgcat cgctaagcgc atgaacatac agaatctctg 2521 gtccaagcca caggtggaag acacagaaga gatggccagc aaagatggtt gcccaaaacc 2581 caaagaggat gaagagtttg ttatttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaagaacaaa tctggtcgtg gcaagaagca cacagccttc tcaagcaaag ggctcagtga 2701 cgaggagtac gatgagtaca agagaatcag agaagaaagg aatggcaagt attccataga 2761 agagtaccta caggacagag acaagtacta tgaggaggtg gctattgcca gggcaaccga 2821 agaagacttc tgtgaagaag aagaggccaa aatccggcag agaattttca gaccaacaag 2881 gaagcaacgc aaagaagaga gggcctccct cggcttggtc acaggctctg aaatcaggaa 2941 gagaaaccca gaagacttca agcccaaggg aaagctgtgg gctgatgatg acagaagtgt 3001 tgactacaat gagaaactca actttgaggc cccgccaagc atctggtcgc ggatagtcaa 3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggtgcaaaag agttcttcgg agtccctatc aaacaaatcc agatacacaa 3181 atcaggtgaa ttctgtcgat tgagattccc aaaaccaatc agaactgatg tgacgggcat 3241 gattctagaa gaaggtgcgc ccgaagggac cgtggccaca ctgctcatca agagaccaac 3301 tggagaactc atgcctctgg cagccagaat gggaacccat gcaaccatga agattcaggg 3361 gcgcacagtt ggaggacaaa tgggtatgct cctgacaggg tccaacgcca agagcatgga 3421 cctaggcaca acaccaggtg actgcggctg tccctacatc tacaagagag ggaatgacta 3481 cgtggccata ggggtccaca cggccgctgc ccgtggagga aacactgtca tatgtgccac 3541 ccaggggagt gagggagaag ccacacttga aggaggtgac aacaaaggaa catactgcgg 3601 tgcaccaatc ttgggcccag ggagtgctcc aaaactcagc accaagacta agttttggag 3661 atcatccaca acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaaaga 3721 tcccagagtc aaaggtggcc cttcattaca acaagttatg agggatcagc taaagccatt 3781 cacagaaccc agaggcaaac caccaagacc aaatgtgttg gaagctgcta agaaaaccat 3841 catcaacgtt cttgagcaaa caattgaccc acctcaaaaa tggtcattcg cgcaagcttg 3901 cgcatccctt gacaaaacca cctccagcgg ccacccgcac catatgcgga aaaacgattg 3961 ttggaatggg gagtccttca caggaagatt ggcagatcag gcctccaagg ccaacctaat 4021 gtttgaagag ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgaattggt 4081 aaagactgac aaaatttatg gtaagatcaa gaagaggctt ctgtggggct cagacctggc 4141 gaccatgata cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacactg 4201 tgtcaccctt cctgtcagag ttggtatgaa catgaatgaa gatggcccca tcatctttga 4261 gaaacactcc agatataaat atcactatga tgctgattat tcccggtggg actcgacaca 4321 acaaagggat gtgctagcag cagcactaga aatcatggtt aaattctctc cagaaccaca 4381 cctggctcag gtagttgcag aagacctcct ctcccctagt gtaatggatg taggtgactt 4441 tcaaatatca ataagtgagg ggctcccctc tggggtgcct tgcacctccc agtggaactc 4501 catcgcccac tggctcctca ctctttgtgc actctctgaa gtcacggacc tgtcccctga 4561 cattatccag gccaactccc ttttctcctt ctatggtgat gatgagattg tgagcacaga 4621 cataaagttg gacccagaga agttgacagc aaaactcaag gagtacgggc tgaaaccaac 4681 ccgtcccgac aaaactgaag gaccccttgt tatctctgaa gatctggatg gcctgacatt 4741 cctccggagg actgtgaccc gtgacccagc tggttggttt ggaaaattgg aacaaagctc 4801 aattctcagg caaatgtact ggactagggg tcccaaccat gaagatccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaact gatgtcctta ctgggcgagg ctgcactcca 4921 cggcccagca ttttacagca aaattagtaa attggttatt gcagagctga aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcagg tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccgc tccatctaat gatggtgcca cgggcctcgt cccagagatc aacaacgaga 5161 cccttcctct ggaaccggta gcgggtgcag ctattgccgc gcctgttact ggccaaaata 5221 atataattga tccctggatt agaacaaatt ttgtacaagc acccaatggg gagttcacag 5281 tctcacccag aaactctcct ggagaaattc ttctaaattt ggaattgggt cctgatttaa 5341 atccatatct ggcacattta tctagaatgt ataatgggta tgctggtggc gtagaagttc 5401 aagtcctcct tgcagggaat gcgttcactg caggaaagat tctcttcgct gccgtaccac 5461 caaatttccc agttgaattc ttgagtcctg cacaaatcac catgttgcca catttaatag 5521 ttgatgttag aacccttgaa cccatcatga taccactccc tgatgtcagg aacaccttct 5581 ttcactacaa taatcaacct gccaatcgca tgcgattggt agccatgttg tatacccccc 5641 tgagatctaa tggttctggt gatgatgttt tcacagtgtc atgtagagtg ctaactagac 5701 ccaccccaga ttttgagttt acatacttgg tccccccttc ggtagagtct aagactaaac 5761 ccttttctct gcccatacta accatctctg aattgaccaa ttcaagattt cctgtaccgg 5821 tggattcatt gttcacagcc caaaacaata atcttaatgt tcaatgtcaa aatggtcgct 5881 gcacattaga tggtgagttg cagggaacca ctcagttgca accatcaggc atctgcgcct 5941 tcagaggcaa aataacggca gatgtacgtc caaaccacga tgacagatgg catatgcaac 6001 tgacaaatct caatggaacc cccttcgacc caacagagga tgtaccagct ccactgggca 6061 ccccagattt cacaggcctt ctcttcggag tggcaagcca aagaaatgtt caaccccacc 6121 caaacactac cagggcacat gaagccgtga tatccacaac cagttcacag tttgtgccaa 6181 aattaggatc aatcaacttt ggtagcacaa gtgatgattt cactgttggc cagcccacaa 6241 aattcacacc agttggcatc aagattgagg atggacatgc atttgatcaa tggaccctac 6301 ccaggtattc aggccattta actcttaata tgaatcttgc cccacctgtt gctccaaatt 6361 tccctggtga acaactactc ttctttaggt caaatgtccc ctgtgccggt ggcattagtg 6421 atggtatcat cgactgcctg ttgcctcagg agtggataca gcacttctac caggagtctg 6481 ctccctccca atctgatgtg gccctgatca gatacgtcaa ccccgacacg ggccgcacac 6541 ttttcgaggc gaaactccat agaacaggct acatcactgt tgcccattca ggtgattatc 6601 cccttgttgt cccctccaat ggatacttta gatttgattc ttgggtgaac caattttatt 6661 cacttgcccc catgggaact gggaatgggc gcagacgggt gcagtaatgg caggagcttt 6721 catagcaggt ctagcaggtg acatgctcac caacacagtt ggctcactgg cgaacgccgg 6781 ggccaatgcc atcactcaaa agatagactt tgaaaacaac aaacagctcc aatctgcctc 6841 cttccaacat gacaaagaca tgctccaagc acaagtggct gccaccaagc agttacaggc 6901 tgagatgatc gccatcaagc aggggatact gaccgcgggc ggcttttccc ccactgatgc 6961 ggcgagagga gcagtgggtg cacccatgac caaagtcctc gactggtctg gtactcgtta 7021 ctgggctcca aactccacga ggacaacagg ttactcaggg cagtttacat cagcaccagt 7081 gcatatgccc acaaaaacaa ttcagcctgc tcctgttaaa aggactcaac ctctttcttc 7141 ctcttcaggt agtatctata gtctttcaac acagagcact gtcttgacca agccttcttc 7201 aggctcttct tctgtttctt ctgcttctac acaatctaca aaattgagtt cagtttcttc 7261 aatggataga acagcaaatt gggtaaatca gcaaagaagc ctcagcccct tcatgagtgg 7321 tgcactcaac atatctcatg taacacctcc atcgagcagg gcttcgagtt cggggacagt 7381 ctcaactgta cccaaagaag ttttggactc ctggacacct gcattcaaca cacgcagaca 7441 gccgctcttc gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aagaatcaat 7501 tagttttaat taaattgtat tggatttaat tttaattgga tctttt //