Typing tool
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Typing tool
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Complete norovirus genomes
| OL943801 | GII.3 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6728
ORF3: 6728..7492
LOCUS OL943801 7546 bp RNA linear VRL 25-DEC-2021
DEFINITION Norovirus GII isolate Hu/US/2013/GII.3[P16]/Guatemala0082-GII3,
complete genome.
ACCESSION OL943801
VERSION OL943801.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7546)
AUTHORS Montmayeur,A.M., Lopez,M.R., Chhabra,P. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7546
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2013/GII.3[P16]/Guatemala0082-GII3"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Guatemala"
/collection_date="05-Jun-2013"
/note="genotype: GII.3[P16]"
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UHH89715.1"
/translation="MKMASNDASAAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNPQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIRLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQSESEAKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEYWN
GETFIGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 5..997
/gene="ORF1"
/product="p48"
mat_peptide 998..2095
/gene="ORF1"
/product="NTPase"
mat_peptide 2096..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6728
/gene="ORF2"
CDS 5082..6728
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UHH89716.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNAPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDNTTRAHEAKVDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWTLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGYMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6728..7492
/gene="ORF3"
CDS 6728..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UHH89717.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGAGAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPITKVLDWSG
TRYWAPNATSTTSMSGGFTGQAVHRATPNFTTNQAPKPTPSSGSSVRSNSTQLTNLSS
HSSGSSRSSGSTMVSSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSLD
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggct cggcctaaac agcccgcccc gagggacaac ccacaaaagc ctccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 accagtcatt aggtatgagg ttaagagtgg gatctctggc ctgcccgagc tcacgacagt
301 cccccaaccg gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta
601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtattagacc tcaatgactc
661 atggcttaac aggaggatgg tacaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cccctgccta ctatggatga ctccaaaatc aagaaggtgg caaatatatt
781 tctgtgttca ctgtccacgc tgttcaccag acctataaag gacctcatag gaaaaattaa
841 accattaaat atcttgaaca tcctggcaac gtgtgactgg acgttcgccg gaatagtgga
901 gtctttgata ttactcgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg gagactacga gttgcagggg ccagaagacc tcgccgttga
1021 gctcgtacct gtggtaatgg gagggattgg tttggtgctg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta
1141 tggcttagag atactcaaat tggtcatgaa gtggttcttc ccgaagaaag aagaggccaa
1201 tgagctagcc atggtaagag ctatagagga tgctgtactg gatcttgagg cgatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 ggacatggag gaggaaaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggct aggtcactag tccacagggc
1441 caaggaggag ttatctagca ggattagacc agtggttgtt atgatatctg gcaagccagg
1501 gataggcaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcgggctca taccgagaaa cggtgtggac cattgggatg catacaaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctctgcg
1681 catacaagaa ttggctgata cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtacgccga
1861 ggcaccagaa gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgcctttaag ccggactttt cacatatcag gttgcaactt gcacctcagg gcggctttga
1981 caagaatggt aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct
2041 tattgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagtcacc accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggctgc
2161 agaaaacaag tatgggttag tggacaccat gagagttggt aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa aaatgtgacc atcaagaggt gccgaatcat
2281 ctacggtggc tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggtgaagaac acctctgtac agaccaacaa cgagttggcc ggagccctgc accacctcaa
2401 acatgcccga atcagatact atgtcagatg tgtgcaagaa gcagtctact ctatcataca
2461 aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagaact
2521 ttggtcgaag ccaccattag accaaagtga gtcagaggct aaggaagagg cccccaagtc
2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaagggtt tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg agatcaaaat ccgtcagagg atcttccgtc ccaccaggaa
2881 acaaaggaag gaagagaggg ccacactagg gctagtaact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt
3061 tggttctggc tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ccccatcaag caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggcactgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggg gtgcatacag cagcagcccg tggtggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaagg tggagatgac aaaggaacat attgtggggc
3601 acccattcta ggccctggag gggcaccaaa attgagtacc aaaaccaaat tttggaggtc
3661 atcgaacacg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgtgaccc
3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga agccattcac
3781 tgagcccagg ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat
3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccccatcac gttcggaaga atgaatactg
3961 gaacggtgag accttcattg gtaaattggc agaccaagca tcaaaagcaa atctaatgtt
4021 tgaggaaggg aaacacatga caccagtgta cacagcagcc ctcaaggacg agctggtcaa
4081 gactgacaaa gtctatggaa agatcaaaaa gagactgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat
4201 atcactccca gtccgagtag gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtacc attatgatgc agactactcc cgctgggatt caacacaaca
4321 gagggcagta ttagcagcag ccttggaaat catggtcagg ttctctgcag agccacaact
4381 ggcacagata gtcgctgagg atctgttggc ccccagtgtg gtagatgtag gagactttaa
4441 aatttcaata aatgaagggc tcccttctgg tgtaccatgc acttctcaat ggaactccat
4501 cgcacactgg ctgctaactc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcattcta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggac cctgaaaagt taaccaccaa attgaaagag tacggcctga aaccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ttgaacggac tcactttcct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagttcaat
4801 attgaggcag atgtactgga ctagaggacc aaaccatgaa gatcccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcattgctt ggtgaggcct cccttcacgg
4921 accctctttc tacagcaaga ttagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggacttttac gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgatttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg
5101 acgctgctcc atctaatgat ggtgccgccg gcctcgtacc agagatcaat aatgaggcaa
5161 tggcgctaga tccagtggcg ggtgcagcga tagcagcacc ccttactggc cagcaaaaca
5221 taatagatcc ctggattatg aataattttg tgcaagcacc tggtggtgag tttacagtgt
5281 cacctaggaa cgcccctggt gaagtacttc taaatttaga attaggccca gaaataaatc
5341 cctatctggc gcatcttgct aggatgtaca atggttatgc aggtgggttt gaggtgcagg
5401 tggtcctggc tggaaatgcg tttacagcag ggaaagtgat ctttgcagct atacccccca
5461 attttccaat tgataatttg agtgcagcgc agattacaat gtgtcctcat gtaattgtgg
5521 acgtcagaca gttggaacca atcaacctcc cgatgcctga tgtccgcaac aatttcttcc
5581 attacaatca aggttctgat tcgaggttac gcttaattgc aatgttgtac acacccctta
5641 gggcaaataa ttctggagat gatgttttca ctgtgtcatg tagggtattg actaggccca
5701 gtcctgattt ctcattcaat ttcctcgtcc cgcccactgt ggaatcaaag acaaaacctt
5761 tttccctccc tattttgact atctctgaga tgtctaattc tagatttcca gtgccaattg
5821 actctctgca caccagtcca actgataaca ttgttgttca gtgtcaaaat gggcgcgtca
5881 cccttgacgg tgagctaatg ggcaccactc aactcttgcc gagtcagata tgtgctttta
5941 ggggtgtgct caccagatca acaagcaggg ccagtgacca agctgacaca gcaaccccca
6001 gactcttcaa ctactactgg cacatacaac tagacaacct aaatgggacc ccgtatgatc
6061 ctgcagagga cataccagct cctctgggga cgccagactt tcggggcaaa gtctttggcg
6121 tagccagcca gagaaaccct gacaacacaa cgagggcaca tgaggcaaaa gtggacacaa
6181 catctggccg cttcacccca aaattgggct ccctagaaat atccactgaa tctggtgact
6241 ttgaccaaaa tcaaccaaca agattcaccc cagttggcat tggagttgac aatgaggcag
6301 actttcaaca atggacctta cctgactatt ctggtcagtt cacccacaac atgaatctgg
6361 ccccagctgt cgctcccaat tttcccggtg aacaacttct tttcttccgc tcacagttgc
6421 catcctctgg cgggcggtcc aatggcattc tagactgctt ggtcccccag gaatgggtcc
6481 aacatttcta ccaggaatcc gcccctgccc aaacgcaggt ggctctggtc aggtatgtca
6541 accctgatac tggtagggtg ttatttgagg ctaagctgca taagctaggc tacatgacca
6601 tagctaagag tggtgattct ccaataactg tacccccaaa tggatacttt aggtttgaat
6661 cttgggtgaa ccccttttac acattagccc ccatgggaac tgggaatggg cgtagaagga
6721 tccaataatg gctggagcct ttatagcagg attggctggt gacatgctca caaacactgt
6781 agggtcttta gttaatgcag gggctggtgc tattaatcaa aaagttgatt ttgaaaataa
6841 caaatattta caaaatgcat cttttaatca tgataaggag atgttaaatg cacaaattga
6901 ggcaacaaag aggctacagg ctgacatgat tgctatcaaa caaggggttt tgaccgctgg
6961 cggtttttcc cccactgatg cagcccgtgg ggctattaac gcccccataa caaaagttct
7021 ggactggagt ggaaccaggt actgggcacc aaatgccacc tccacaactt caatgtcagg
7081 tggcttcaca ggtcaagctg tgcacagagc tacaccaaat tttacaacca atcaagcccc
7141 aaaacccaca cccagcagtg ggtcttcagt gaggtcaaac tcaacccaac tcaccaattt
7201 gagctcacac tcatctgggt cttctcgatc cagcggatcc acgatggtca gctcgttacc
7261 atcttccagt agaactagag actgggttaa ccaacagaat tttaatctgg aaccacacat
7321 gcctgggtct ctcaggacag cttttgtcac tccaccatct agtacagcct ctagcttaga
7381 cacggtctca accgtgccca agagtgtttt ggactcctgg acatctgcgt ttaacacgcg
7441 cagacagccg cttttcgcac accttcgtag aaggggggag tcaaatgtct agtgaaaaga
7501 ttatttttaa atttggtttg taattggatt taaattagaa tctttt
//