Typing tool
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Typing tool
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Complete norovirus genomes
| OL943800 | GII.4 New Orleans | |
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| GII.P4 Den Haag |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS OL943800 7559 bp RNA linear VRL 25-DEC-2021
DEFINITION Norovirus GII isolate Hu/US/2010/GII.4 New Orleans[P4 New
Orleans]/Guatemala0015, complete genome.
ACCESSION OL943800
VERSION OL943800.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Montmayeur,A.M., Lopez,M.R., Chhabra,P. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2010/GII.4 New Orleans[P4 New
Orleans]/Guatemala0015"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Guatemala"
/collection_date="21-Oct-2010"
/note="genotype: GII.4 New Orleans[P4 New Orleans]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UHH89712.1"
/translation="MKMASNDASAAAVANSNNDTAKSSNDKMFSNMAVTLKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGFVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED
LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKHDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMETMKVGRQLKDVKTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSRPQVENTEEATSKDGC
PKSKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVAGMILEEGAPEG
TVVSLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSESMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UHH89713.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFVANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6707..7513
/gene="ORF3"
CDS 6707..7513
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UHH89714.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLHAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDAKTTTYNAGRFSTPQPSGAPPGRANLRAAVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSSARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaaatg acaaaatgtt ttctaacatg gctgtcactc ttaaacgagc
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaagt
241 agtggtttct tacagcgcca aagatggcgt ttccggttta cctgagcttt ccaccgtcag
301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 ggatgctaag gaaccactaa ctgggacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgttgagc gaggttttgt gctgggcgta cacaagccac cagctgccat
481 tagcctcgcc aaggtcgaat taacaccact ctccttgttc tggagacctg tgtacactcc
541 tcagtacctc atttctccag ataccctcaa gaaattacac ggagaaacat ttccctacac
601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggatttaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtggcta acatattcct
781 gtgcgccctg tcttcgctat tcaccaggcc cataaaagac ataataggaa agttaaggcc
841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tggtggagct
1021 cgtccctgtg gtaatggggg ggattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagagcttgc aaagaccttg gtgcatatgg
1141 gctagagatc ttaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcgaatga
1201 actggccatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa
1261 ccatatgacc accctactca aagacaaaga tagcctggca acctacatga ggaccctcga
1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcacttctgg cgagaattgc cgctgcacgc tccctggtac accgagcaaa
1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca ggccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgacg ccctcagact
1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg
1741 aaaggtcttt gacagcgatg tcatcattat cactactaat ctggccaacc cagcaccact
1801 ggactacgtc aactttgagg catgctcgag gcgcattgat ttcctcgtgt acgcagaagc
1861 ccccgaggtc gaaaaggcga agcacgactt cccgggccaa cctgacatgt ggaaaaacgc
1921 ttttagttct gatttctcac acataaaatt ggcactggct ccacaaggtg gctttgataa
1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat
2041 tgcccgggca tcagggctgc tccatgagag attggatgag ttcgaactac agggcccaac
2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga
2161 aaacaaatat ggattgatgg aaacaatgaa agttgggagg cagctcaagg atgtcaaaac
2221 catgccagaa cttaagcaag cactcaagaa tatctcaatc aaaaagtgcc agattgtgta
2281 cagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 acagagtacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg
2401 cgccagaatc aggtattatg ttaagtgtgt tcaggaggcc ctgtattcta tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagacttgtg
2521 gtccaggcca caagtggaaa acacagagga ggctaccagc aaggacgggt gcccaaaatc
2581 caaagatgat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg
2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga
2701 tgaagagtat gatgaataca agagaattag agaggaaaga aatggtaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta gaccaacaag
2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 aagaaatcca gaagacttca agcccaaggg gaaactatgg gctgacgatg acaggagtgt
3001 ggactataat gaaaaactca gttttgaggc cccaccaagc atctggtcaa ggatagtcaa
3061 ttttggctca ggttggggct tctgggtctc ccccagccta ttcataacat caacccacgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtgcacaa
3181 gtcaggcgag ttctgtcgct tgaggttccc aaaaccaatc aggaccgatg tggctggcat
3241 gatcttggaa gaaggtgcgc ccgaaggcac cgtggtctca ctactcatca aaaggtctac
3301 tggagaactc atgcccctag cagctagaat ggggacccac gcaaccatga aaattcaagg
3361 acgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctgggcacc acaccaggcg attgcggctg tccctacatc tacaagagag gaaacgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agcaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaactcagc accaaaacca aattctggag
3661 atcatccaca gcaccactcc cacctggcac ttatgaacca gcctaccttg gtggcaaaga
3721 ccccagagtc aagggtggcc cctcgctaca gcaagtcatg agagaccagc tgaaaccatt
3781 tacagagcct aggggtaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat
3841 catcaatgtc cttgaacaga caattgatcc acctgagaag tggtcgttcg cacaagcttg
3901 cgcgtccctt gataagacca cttctagcgg tcatccgcac cacatgcgga aaaatgactg
3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatctggc
4141 aaccatgatc cggtgtgctc gagcattcgg aggtctgatg gatgagctca aagcacactg
4201 tgtcacactt cctgtcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaagcattcc aggtatagat accactatga tgctgattac tctcggtggg attcaacaca
4321 acagagagcc gtgctggcag ccgctctaga aatcatggtt aaattctcct cagaaccaca
4381 cttggctcag gtagtagcag aagaccttct ttctcctagc gtagtggatg tgggtgactt
4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gtcacaaatt tgtctccaga
4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagcacaga
4621 cataaaatta gacccagaaa aattgacagc aaagcttaag gaatatgggt tgaaaccaac
4681 ccgtcctgac aaaactgaag ggcctcttgt catttctgaa gacttagacg gtttgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc
4801 aatactcagg cagatgtact ggaccagggg ccccaaccat gaagacccat ctgaatcaat
4861 gatcccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca
4921 cggcccagca ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagtgc gcccttaggc cctgatttga
5341 acccctacct ttcccatctg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggt ttgagcccca gccaggtcac tatgttcccc cacataatag
5521 tagatgttag gcaattagaa cctgtgttga tccccttacc cgatgttagg aataatttct
5581 atcattataa tcaatcaaat gaccccacca tcaaattgat agcaatgctg tacacaccac
5641 ttagggctaa taatgctggg gacgatgttt tcacagtctc ttgtcgagtc ctcacgagac
5701 catcccccga ttttgatttc atatttttag tgccacccac agttgaatca aggactaaac
5761 cattctctgt cccaatttta actgttgagg aaatgaccaa ttcaaggttc cccattcctt
5821 tggaaaagtt gttcacgggc cccagtagta cctttgttgt tcaaccacaa aacggcaggt
5881 gcacgactga tggcgtgctc ctaggtacta cccagctgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggca gtcgtaacta cacaatgaat ctggcttccc
6001 aaaactggaa cagttacgac ccaacagaag aaatcccagc tcctctagga actccagatt
6061 tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag gacagatggc tcgacccgcg
6121 gccacaaagc cacagtgtac actgggagcg ccgacttttc tccaaaactg ggtagagttc
6181 aatttgccac tgacacagac aatgatttcg ttgctaacca aaacacaaag ttcaccccag
6241 tcggtgttat ccaggatggt gatactgccc accgaaatga accccaacaa tgggtgctcc
6301 caagttactc aggcagaaac actcataatg tgcacctggc ccccgctgta gcccccactt
6361 ttccgggtga gcaactcctc ttcttcagat ctaccatgcc cggatgcagc gggtacccca
6421 acatggattt ggactgtctg ctcccccagg aatgggtgca gtatttctac caagaagcag
6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc
6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg
6601 atttggtcat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc tatgggaaat gggacggggc gcagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg acgtccttgg ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttccaattt agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 tgcgcaaatt gaggccacca aaaagttgca acaggaaatg atgaaagtta aacaagcaat
6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcgatca acgcccccat
7021 gacaaaagct ttggactgga gcgggacaag gtactgggct cccgatgcta agactacaac
7081 atataatgca ggccgctttt ccacccctca accctcgggg gcaccaccag gaagagctaa
7141 tcttagggct gctgtccccg cccgaggttc ctccagcaca tcttctaact cttctattgc
7201 tacttctgtg tattcaaatc aaaccacttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcatctgc aaggactagg agctgggttg aggatcaaaa
7321 taggaatttg tcacctttca tgaggggggc ccacaacatc tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacatccgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt
//