Typing tool
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Typing tool
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Complete norovirus genomes
| OL913975 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS OL913975 7548 bp RNA linear VRL 25-DEC-2021
DEFINITION Norovirus GII isolate Hu/US/2012/GII.3[P12]/Houston7410, complete
genome.
ACCESSION OL913975
VERSION OL913975.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7548)
AUTHORS Montmayeur,A.M., Boom,J., Chhabra,P. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7548
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2012/GII.3[P12]/Houston7410"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="06-Aug-2012"
/note="genotype: GII.3[P12]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UHD96020.1"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVSRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6731
/gene="ORF2"
CDS 5085..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UHD96021.1"
/translation="MKMASNDAAPSNDGAAGLVPEINSEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGIIDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KSGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6731..7495
/gene="ORF3"
CDS 6731..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UHD96022.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVRRPTPNFKTNQAPKPTPNSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaata ccacaaaggc ctccacggcc
181 acccacccca gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtctct tacagcgcca aagatggcgt ttctggtttg cctgagctca ccactgtcag
301 gcagccggat gaaaccaaca cggcgttcag tgtcccccca ctcaaccaga gggagaacag
361 ggacgccaag gagccactga ccggaacaat cctggaaatg tgggatgggg agatctatca
421 ttatggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 tagcctcgcc aaggttgaac tcgcaccact ctctctattt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gaggctgcat ggagagtcgt tcccttacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc aaaggacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacca tggatgactc caaattaaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc tatcaaagat ataataggaa aggtgagacc
841 gctcaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtagaatc
901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagagcttgt aaagatcttg gtgcatatgg
1141 attggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aggcaaatga
1201 gctggccatg gtgaggtcca ttgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 cctcgaggag gagaaagcca ggaaactttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gccctactgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaaaatc gcagcttcgc ttacagggga
1561 ccagcgcgtg ggcctcatcc ctcgcaatgg cgttgatcac tgggatgcat ataagggtga
1621 aagagtcgtc ctatgggatg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctgaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagttct gacttctcgc acataaaact ggcgctggct ccgcagggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt tatgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tatgagctgc agggcccaac
2101 tcccaccacc tttaactttg accgcaataa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtat ggattgttgg acacaatgag agttggaaag cagctcaagg atgtcaagac
2221 catgccagag ctcaaacagg cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acttataggc ttgagtctga tggcaagggt gatgtaagag ttgacagagt
2341 tcagaacgcc actgtacaga ccaacaatga acttgccggc gccctacacc accttaggtg
2401 tgccagaatc agatattatg tcaagtgtgt ccaagaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtga ccacgcgcat tgtcaagcgc atgaacatac aagacctctg
2521 gtccaagcca caggtagagg atacagagga aacagccagc aaggatgggt gcccaaaacc
2581 caaggatgat gaagagttcg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggtcgtg gtaagaagca cacggcattc tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag ggaagaaaga aatggaaaat attccataga
2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaggagg aagaggccaa gatccgacaa aggattttta ggccaacaag
2881 gaaacaacgc aaagaggaga ggacctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca aacctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccgccaagc atctggtcga ggatagttaa
3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caacccatgt
3121 cataccccag ggcgcacagg agttctttgg tgtccccatc aaacagattc agatacacaa
3181 atcgggtgaa ttctgccgtt tgaggtttcc aaaaccgatc agaactgacg tgacaggcat
3241 gattttagaa gaaggtgcac ccgaagggac cgtggtcacg ttactcatca aaaggccaac
3301 tggagaactc atgcccctgg cagccagaat gggaacccat gcaaccatga agatccaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tccaacgcta agagtatgga
3421 cctaggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg gaaatgacta
3481 cgtagtcatt ggagttcaca cggctgccgc ccgtggagga aatactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 tgcaccaatc ttaggtccag gaagtgctcc aaaactcagc accaagacta aattctggag
3661 gtcgtccacg gcaccactcc cacctggtac ctatgagcca gcctacctcg gcggcaagga
3721 ccccagagtt aagggtggcc cctcattaca acaagttatg agggaccaac tgaaaccatt
3781 cactgaaccc aggggcaaac caccaaagcc aagtgtgtta gaagctgcca agaaaaccat
3841 cgtcaacgtc cttgaacaaa caattgatcc acctcaaaaa tggtcgtttg cacaagcatg
3901 cgcatccctt gacaagacca cttccagcgg tcacccgcac catatgcgga aaaatgactg
3961 ttggaacggg gagtccttta caggaaaatt agcagaccag gcttctaagg ctaacctgat
4021 gttcgaggag gggaagaaca tgaccccagt ctacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gcaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gggcattcgg aggcctgatg gaggaactca aagcacactg
4201 tgtcacacta cccgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatataaat accattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttggcag cagccttaga aatcatggtc aagttctccc cagaaccgca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caagatatca atcaatgagg gtctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgag gttacaaacc tgtcccctga
4561 catcattcag gccaactctc tcttttcttt ttacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccaac
4681 ccgccctgac aagactgaag gaccacttgt catctctgaa gacctgaatg gtctaacttt
4741 cctgcggagg accgtgtccc gcgacccagc gggctggttt ggaaagttgg aacagagttc
4801 aatactcaga caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacat tcccagaggc ccatacaatt gatgtctttg ctgggtgagg ctgcactcca
4921 cggcccagca ttctatagca aaatcagtaa actggtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagaacc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgctgc tccatctaat gatggtgctg ccggcctcgt cccagagatc aacagtgagg
5161 caatggcgct agaaccagtg gcgggtgcag cgatagcagc acccctcact ggtcagcaga
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag
5281 tatctcctag aaattcccct ggtgaagttc ttctcaattt ggaattgggt ccagaaataa
5341 atccctattt ggcccatctt gctagaatgt ataatggtta tgcaggtgga tttgaagtgc
5401 aggtggtcct agctggaaat gcgtttacag caggaaagat aatcttcgca gctattcccc
5461 ctaattttcc aattgataat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagctggaa ccagtcaacc tcccgatgcc tgacgttcgc aacaacttct
5581 tccattacaa tcaagggtct gattcgagat tgcgcctaat tgcaatgcta tatacacctc
5641 ttagggcaaa taattctggg gatgatgttt ttactgtgtc ttgcagagtg ctaactagac
5701 ctagccctga cttctcattt aattttcttg tgccacccac tgtggagtca aagacaaaac
5761 ccttttccct ccctattctg actatctccg aaatgtccaa ttctaggttc ccagtaccaa
5821 ttgattctct gcacaccagc cctactgaga acattgttgt ccagtgtcag aatggacgag
5881 tcacccttga tggtgagttg atgggcacca cccaactctt acctagccaa atctgtgctt
5941 tcaggggcac gctcaccaga tcaacaagca gggccagtga ccaggccgat acagcaaccc
6001 ctagattgtt taattattat tggcatatac aattggataa cctaaacgga actccttatg
6061 accctgcaga agatatacca ggccccctag ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccagagaaat cctgatgcca cgactagggc acatgaagca aagatagaca
6181 caacatctgg ccgcttcacc ccaaaattag gttcactaga gatttccact gagtctggag
6241 attttgatca aaaccaacca acaagattca ccccagttgg cattggggtt gaccatgagt
6301 cagactttca acaatgggct cttcccgact atgcaggcca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 tgccatcttc tggtgggcgg tccaacggga ttatagactg cctggtcccc caagagtggg
6481 tgcagcattt ctaccaagaa tcagccccat cccaaactca agtggcccta gttaggtatg
6541 tcaaccctga cactggtaga gtgttatttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagccaa gagtggtgac tccccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaaccccttt tacacacttg cccccatggg aactgggaat gggcgtagaa
6721 ggattcaata atggctggag cttttatagc aggattggct ggtgacatgt taacaaatac
6781 tgtaggatct ttagttaatg caggggctaa tgccattaat caaacaattg attttgaaaa
6841 taataaatat ttgcaaaatg cctcttttaa tcatgataag gagatgttga atgcacaaat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aaacaagggg ttttgaccgc
6961 tggcggcttc tcccctactg atgcagcccg cggggcaatt aatgccccca tgacaaaagt
7021 cctagattgg aatggaacga gatactgggc accaggtgcc acctccacaa cctcgatgtc
7081 gggtggcttc acgaatcaaa ctgtgcgcag acccacacca aattttaaaa cgaaccaggc
7141 ccccaaaccc acccccaaca gtgggtcttc agtgaggtca aattcaaccc aaattaccag
7201 cctgagttca cactcgtccg ggtcgtctcg atccagcggg tctacagttg tcagctcaat
7261 accatcctct aacaggacta gggactgggt taaccaacaa aattttaatt tggaaccaca
7321 catgcctgga tctcttagga cagcttttgt cactccacca tctagtacag cctctagctc
7381 aggcacagtc tcaactgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaatac
7441 gcgcagacag ccgctattcg cacaccttcg cagaaggggg gagtcaaatg tttagtgaaa
7501 agattatttt aaatttggtt taaaattgga tttaatttgg aatctttt
//