Typing tool
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Typing tool
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Complete norovirus genomes
| OL898513 | GII.14 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6689
ORF3: 6689..7483
LOCUS OL898513 7529 bp RNA linear VRL 22-DEC-2021
DEFINITION Norovirus GII isolate Hu/US/2016/GII.14[P7]/Kansas0846, complete
genome.
ACCESSION OL898513
VERSION OL898513.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7529)
AUTHORS Montmayeur,A.M., Selvarangan,R., Chhabra,P. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2021) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7529
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2016/GII.14[P7]/Kansas0846"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="27-Dec-2016"
/note="genotype: GII.14[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UHB38534.1"
/translation="MKMASNDASAALGSQKSVNDSNNATPSDKEEVGTFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETVIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVPPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKS
VKTLEDLKVALRDVKFNECEIIYKNSKYRVSSNGKGSVSIDRVEDNASQTVNEVHSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETQEVNESEE
GVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIRELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSVLVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTESRG
KPPRPAILEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6689
/gene="ORF2"
CDS 5079..6689
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UHB38535.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAELNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSRDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 6689..7483
/gene="ORF3"
CDS 6689..7483
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UHB38536.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG
SRYWAPNSMKTTGYSGTFASQGIRSSPHLSNQTPSAVKPTRPLPSISSSSSVYSSSST
APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
PPSSKASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccctt ggcagtcaaa aatctgtcaa
61 tgacagtaat aatgccaccc cttccgacaa agaagaggtt ggtacattct ccaacattaa
121 agttggattc aagaaaatgc tgggtgccgt acccaaaggt accaaggcac ccagcagtga
181 tcagcattgc cccacagtta agatcgggcc taaaacattg acaatccccc ccgaaccccc
241 aaatggtgaa gacaccgtac aatttgatgc aaagtcagaa actgtaattg ggctaccgga
301 cttaacaacg gtgcaaaacg aacacgaaaa tactccatac actgtccccc cattaagtga
361 gagggaacac agaccggcta ctgaaccact ccctggcaca atattggaga tgtgggatgg
421 tgagttttac cattactccg tgtacgtcag cgatggcaaa gctctggggg tccacaaacc
481 accggcggct ataagtctcg cgacgataga actcaccccc atatcactct actggagacc
541 cgtctacacc cccaactact tggtcccccc agacacatta aagggcctcg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgttggg tgcttgagct
661 caacgacacg tggcttaaca gaagatgcat ctccagaacc accggcttct ttaaaccata
721 ccagtcttgg aataggaaac ctctcccaac tgttgatgat ggaaagatca aaaaggtggc
781 caacgcgatc ctctgtgcac tcggctcgct gttttcaaaa ccaatcaaag atctattagg
841 taaactcaaa ccattgaatc tactacactt gctcgcatcc tgtgattgga cgtttgcggg
901 tatagtggag acagtcatct taatggcgga gcttttcaat gtattctgga ccccgccaga
961 tgtctctaat tttatagcct ccctgatagg tgattttgaa ctgcaaggtc ctgaagactt
1021 ggctgtggag ctcgttcccg tggttatggg tggcataggg atggttctcg gcttcaccgc
1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctacgggcgt gcaaagacct
1141 agggaactat gcccttgaca tactcaaatt ggtcatgaaa tggttcttcc caaagaagga
1201 agagaaagct gagatggaga ccttgagggc gattgaagat gctgtccttg atatggaagc
1261 tatagggaat aaccatctca caacccttct caaggacaaa gacagcctca cggctttcat
1321 gaaaaccctg gatctagaag aggaaaaagc aaggaaactg tccactaaat catcttcacc
1381 ggacatagtc ggcaccatta acgccatact agctaggata gctgctgcta gatccctact
1441 acataaggcc aaagaggaga tgtttagcag gattagacca gtagttgtca tgatctcagg
1501 cagacctggc attggaaaaa cccacatggc aagacacttg gctaagagca tcgccaacac
1561 catgagtggc gatcagaggg tcggactcgt cccacgcaat ggtgtcgatc actgggacgc
1621 ctacagagga gagagagtgg tcttgtggga tgactacggt atggggagcc ctgtcaaaga
1681 cgccctgaca ctgcaagaat tggccgacac gtgtccagtc actttaaatt gtgataggat
1741 tgagaataag gggaagatgt ttgatagtga tgtcatcata atcacgacca acttagtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttcc aggagagttg atttcctggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagat ttccccggcc agcctgacat
1921 gtggaaagac cattttaagc cagacttctc ccacattaag ctgactctag ccccccaggg
1981 tggatttgat aagaatggca acaccccaca tggtaagggc accatgcggt ccctaaccca
2041 ggggtcccta accgctagag ttgcaggcct tgtccatgag aggaaggacg agttccaact
2101 ccaaggaaat gaccttcaaa catacaattt tgacaccaac agagtctccg catttagaaa
2161 attggccgca gacaacaagt atgggatcat ggagacgatg agagttggcg cagcgctcaa
2221 gagtgtgaag accttggaag atcttaaagt tgcattgagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaagaatt ctaagtaccg agtctcttcc aacggtaaag gctcagtctc
2341 tattgacaga gttgaagaca atgcttccca gactgtgaac gaggtgcatt cagcactcct
2401 cagactcagg caggcgaggg ccagatacta catcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccgggg catcatttgt tgtcagcagg atctccagaa ggttctgctg
2521 ggaaaggtgg gtcaaaccaa ccgagaccca ggaggtgaat gagtccgaag agggagtggc
2581 ccaaggcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaagaa
2641 caagaaagga aggggcaaga aacacacagc cttctctagc aaaggtctga gtgatgaaga
2701 gtatgacgag ttcaagagga tcagggaaga aagaaatgga aagtactcca ttgaggaata
2761 cctgcaggac cgagaccgct attatgaaga agtagcagtt gctcgggcga cagaggagga
2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaggaaaca
2881 gaggaaggag gaaaggggcg tactcggctt ggtcaccggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccaa aaggcaatct atgggcagat gacaccagaa gtgtggacta
3001 caatgagagg cttgattttg aagcaccccc gagtgtctgg tcaagaatag tcccactagg
3061 cactggttgg gggttttggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc
3121 taaagggatt agagagctct ttggagttga aatcaaacaa atccaaattc ataagtctgg
3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtgct
3241 ggaggagggc gccccagagg gcactgtctg ttctgtgctc gtgaaaagac ccacaggtga
3301 aatgatcccc cttgcagtga ggatgggcac acacgcatcc atgaaaatac agggtaggac
3361 cgttggtggc cagatgggaa tgctcctcac aggagcaaac gcaaagaaca tggatcttgg
3421 caccggccct ggtgactgcg gttgccccta catctacaag cgtggcaacg acatcgttgt
3481 tgcgggcgtc cacaccgcag cagcccgggg aggcaacact gtaatatgtg ctacccaggg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctact gtggtgcccc
3601 aattctgggc cctggcaagg cgcctaaact cagcacgaag accaagtttt ggcgctcatc
3661 accagatgcc ctgccacctg gcacatatga acctgcttac ctaggaggca aagaccctag
3721 agtggaaaaa ggtccctccc tgcagcaagt catgagagac cagctgaggc ccttcacaga
3781 atccagaggc aaaccaccta gacctgcaat tttagaggaa gccaaaaaga cagtaatgaa
3841 tgttctagag caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc
3901 attggacaaa accacttcaa gtggtagtcc ccatcacgtt aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc ctcttgcaga ccaggcttct aaagccaacc tcatgtatga
4021 gcaggctaaa catgtgcagc ccgtgtatac ggctgcgctt aaagatgagc ttgttaagac
4081 tgacaagatc tacaagaaga taaagaagag gcttctatgg gggtcagacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggcggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
4261 ctctaagtac aggtatcact atgatgctga ctattctagg tgggactcaa cccaacaaag
4321 gagcatcctc tctgccgcta tggaagtgat ggtgcggttt tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg actttgtcat
4441 ctcagtccag gaaggcctgc catcaggagt cccatgcaca tcgcaatgga attcaatagc
4501 acactggata ctcactttga gtgcgatggc agaagtgtca ggcctctcac cggatgttgt
4561 ccaagctcac tcttgttttt cattttatgg ggacgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttaa cacaaaaact tagggagtac ggcctggttc ccacccggcc
4681 tgacaaaact gaaggtcccc tcgtcataac tgaagacctc actggcctga cgttccttcg
4741 taggtcgatt gctcgggacc cagctggctg gtttggaaaa ctagaccaag attcaatcct
4801 caggcaactg tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggttcc
4861 tcattctcag cgggccacac aactcatggc acttcttggt gaggcctcac tgcatggtcc
4921 tcagttttac aagaaagtta gcaaaatggt catcaatgaa attaagagtg gtggtctgga
4981 gttttacgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 gtgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacaat gaggttatgg
5161 ctcttgaacc cgtcgctggg gcctcccttg cagcccccgt agtcggtcaa cagaatataa
5221 ttgatccctg gattagaaac aattttgtac aagcccctgc tggtgaattt acagtttccc
5281 ctagaaattc tcctggagaa ctcctacttg atttggaatt gggtcctgaa ctcaacccct
5341 atcttgcaca tttggctagg atgtacaatg ggcacgcagg aggaatggaa gtgcagatag
5401 tactggctgg gaatgcgttc acagctggta agatcctatt tgccgccatc ccacctagct
5461 tcccttatga aaatttgtca cccgcccaat tgactatgtg cccccatgtg atagtggatg
5521 tgaggcaatt agaaccagtg ctcttgccaa tgccagatat aagaaatgtt ttctatcatt
5581 ataatcagaa taacagtccc aaacttaggc ttgtagctat gctttatact cctctgaggg
5641 ctaacaattc aggtgatgat gtgttcacgg tgtcttgccg cgttctaacg cgcccttctc
5701 cagatttcca gttcactttc ttggtcccac ctacagttga gtctaaaact aagaacttca
5761 cccttcccgt tctcagagtc tcagagatga caaactcaag gttccccgtt gttttggacc
5821 aaatgtacac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc agatgcacaa
5881 ctgatggtga gctgcttggt accactatct tacaatctgt gtctatttgc aatttcaaag
5941 gaacaatgca ggcagagctg aatgaagaac cacgatacca gttgcaactc accaacttgg
6001 atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca ccagacttcc
6061 aggccatgtt atacggcgtt gcaagccaac gctcttccag agacaatgcc actagggcac
6121 atgatgctca gattgacact gcgggcgata cattcgcccc gaaaattggc caggttcgat
6181 ttaaatcaag ttccagagat tttgacctgc atgaccctac aaaattcaca cctattggtg
6241 tcaatgtgga tgaccagcac ccttttagac agtggtccct gccaaactac ggtggccacc
6301 ttgccctgaa caatcattta gccccagctg tgacaccgct cttccctggc gagcaaatct
6361 tgttctttag gtcatacatt ccaagcgccg gaggccatac agacggtgct atggactgct
6421 tgctgcccca agagtggata gagcacttct accaggaggc ggctccttcc caatctgaca
6481 tcgcactggt aaggttcatc aaccctgaca caggaagagt gctctttgaa gctaaattgc
6541 ataaacaagg tttcctcaca attgcagcat ctggagacca ccctattgtg atgcccacca
6601 atggttactt taggtttgaa gcttgggtta atcctttcta tactctcgcc cccgtgggaa
6661 ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag gcttggcagg
6721 tgacgttgtg acttccagct tgggctcact cgtgggtgct ggagccaacg ccatcaatca
6781 gaaagtggag tatgacttca acaggcaact ccaggaggca tcttttagac atgataagga
6841 tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga tagacatcaa
6901 gcgggaggca ttgactgcag gcggcttttc ccccgctgat gctgcaagag gtgcagtcaa
6961 agcacctatg acgcagattc ttgattggaa tggttctaga tattgggctc ctaactccat
7021 gaagacaact ggctattcag gtacatttgc ttctcaaggc attagaagtt ccccccacct
7081 gtctaatcaa accccaagtg ctgttaaacc tactaggcct ttaccatcta tatctagttc
7141 ttctagtgtg tatagttctt cttctactgc cccctcacaa tcaacacagt caacaacgct
7201 gtctgcaggg acagggtcct ccagacctaa cactgtgtcc acaaagactt ctacattgtc
7261 gaggacaagt gattgggtca gaggccaaaa tgagatgctt ggcccgttca tgagtggtgc
7321 actccaaact gcttatgtca caccaccatc gagcaaggcc tcatcacaag ggacggtctc
7381 gaccgtaccc aaggctgttt tggactcctg gactcccatg tttaacaccc acaggcagcc
7441 tctcttcgcc cacctgcgta ggcgagggga gtcacagatt tagtgaaaag gatgattagg
7501 gtttctccct ttccccttct tattctttt
//