Typing tool
|
Complete norovirus genomes
OL826940 | GII.2 | ||
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GII.P16 |
ORF1: 5..5104 ORF2: 5085..6713 ORF3: 6713..7492LOCUS OL826940 7500 bp RNA linear VRL 18-DEC-2021 DEFINITION Norovirus GII isolate 2020070 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OL826940 VERSION OL826940.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7500) AUTHORS Huang,Z., Ou,X. and Yao,D. TITLE Distribution of norovirus GII genotype in outbreaks from 2019 to 2020, in Changsha city JOURNAL Unpublished REFERENCE 2 (bases 1 to 7500) AUTHORS Huang,Z., Ou,X. and Yao,D. TITLE Direct Submission JOURNAL Submitted (13-DEC-2021) Microbiological laboratory, Changsha Center for Disease Control and Prevention, beside the liuyang river bridge, No. 509, wanjiali second north Road, Changsha, Hunan 410000, China COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.13.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7500 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="2020070" /isolation_source="Anal swab" /host="Homo sapiens" /db_xref="taxon:122929" /country="China: Changsha" /collection_date="14-Oct-2020" /note="genotype: GII.P16_GII.2" gene 5..5104 /gene="ORF1" CDS 5..5104 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UGS86281.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK TMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVSVEKVKNTSVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE APKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPAGITEVFGVPIKQIQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVARDPAGWFGKLDQSSILRQMYWTRGP NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide 5..1000 /gene="ORF1" /product="p48" mat_peptide 1001..2098 /gene="ORF1" /product="NTPase" mat_peptide 2099..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3028 /gene="ORF1" /product="VPg" mat_peptide 3029..3571 /gene="ORF1" /product="Pro" mat_peptide 3572..5101 /gene="ORF1" /product="RdRp" gene 5085..6713 /gene="ORF2" CDS 5085..6713 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UGS86282.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6713..7492 /gene="ORF3" CDS 6713..7492 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UGS86283.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRISEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga 61 caaagaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc 121 cctcggggct aggcccaaac agcctgcccc gagagacaaa ccacaaaagc ccccaagacc 181 accaactccc gagttggtta agaggatacc ccctcctcca cctaacggcg aagaagaaga 241 agaaccagtc attaggtatg aggtcaagag tgggatctct ggcctgcccg agctcacaac 301 agtcccccaa ccggacgtgg ccaacacagc attcagtgtt ccaccactga gcttgagaga 361 aaacagggag gccaaggagc cgctaacagg ggcaatatta gagatgtggg atggagagat 421 ataccactat ggcctgtacg tggagaaagg cttagtgttg ggtgtgcaca aaccacctgc 481 agccataagc atggcaagag tggagctgac gccgttgtca ttgtactggc gtgtggtgta 541 cactccccaa tacctcatct cccctgaaac cctcaggagg ctcaacggag aggcattccc 601 ttacaccgcc tttgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga 661 ctcatggctt agcaggagga tgatacaaag gacaacgggc ttcttcagac cttaccaaga 721 gtggaacaga aaacccctgc ctaccatgga tgactccaaa attaagaagg tagcaaatat 781 attcctatgt tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat 841 caaaccattg aacatattga atatcctggc aacgtgtgac tggacttttg ccggaatagt 901 ggagtctctg atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc 961 tgctatgatc gctcccttac tcggtgacta cgagttgcaa gggccagaag acctcgccgt 1021 tgaactcgtg cctgtggtaa tgggggggat tggtttggtg ctgggattca ccaaagagaa 1081 aattggcaaa atgttgtcct cagcagcatc aacactcagg gcttgcaaag atcttggtgc 1141 ctatggcttg gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc 1201 caatgagcta gctatggtga gggccataga ggatgctgta ttagaccttg aggcaataga 1261 aaataaccac atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac 1321 actggacatg gaggaggaga aagccaggag gttgtccaca aaatctgcat cccctgacat 1381 agttgggaca atcaacgctc tgctggctcg aatagcagcg gccaggtcat tagtccacag 1441 ggccaaggaa gagctatcta gtaggataag gccagtagtt gttatgatat ctggcaagcc 1501 aggaataggc aaaactcatc tggccaggga ggtggcaaga aaggtggcat ccactctcac 1561 aggagatcaa agagtcggac tcataccacg aaacggtgtg gaccattggg atgcatacaa 1621 aggtgagaga gtcgtgctgt gggacgacta tggcatgagt aaccctattc atgatgctct 1681 tcgcatacaa gaattggctg atacgtgtcc cctcacctta aattgtgaca gaattgaaaa 1741 taaggggaaa gtttttgaca gtgaagtcat aataattaca acaaaccttg ccaatccagc 1801 cccacttgat tatgtcaact ttgaggcctg ttccaggaga attgattttc tggtgtacgc 1861 tgaggcacca gaagtagaaa aggcaaaacg ggactttcct ggtcagccag atatgtggaa 1921 ggacgccttc aagccggact tctcacacat caagctacag cttgcacccc agggcggctt 1981 cgacaagaat ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc 2041 tctgattgcc cgtgcatcag gcctactgca tgagaggatg gatgaatttg aactccaagg 2101 ccccacaatc accaccttta atttcgaccg aaacagaatc acggcattca gacaattggc 2161 tgcagaaaac aaatatggat tggtggatac catgaaagtt ggcaatcaat taaaaggagt 2221 gaaaaccatg gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccagat 2281 catctacggt ggttccacgt atgaccttga atctgatggc aagggcaaag tttcggtgga 2341 aaaggtcaag aacacctctg tacagaccaa taatgagttg gctggggccc tgcaccatct 2401 caaacatgcc cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attccatcat 2461 acaaattgcc ggcgctgcgt ttgtcaccac acgcatcgca cgccgtatga acatacaaga 2521 actctggtcg aagccacaac tagatcaaaa tgaatcagag actaaggaag aggcccccaa 2581 gtcagaagat gacgagttca tcatatcttc taaggacatc aaggaggaag gaaagaaggg 2641 caaaaacaaa actggccgtg gcaagaaaca cactgcattc tccagcaagg gcctgagcga 2701 tgaggagtat gatgagtaca agaggataag agaagagaga aatgggaagt actctataga 2761 ggagtatctt caagacagag acaggtacta tgaggagctc gccattgcca aggccacgga 2821 agaagacttc tgtgaagagg aggagatcaa aatccgtcag agaattttcc gtcccaccag 2881 gaaacaaaga aaggaagaga gggccacatt agggttagta acaggttcag aaatcagaaa 2941 aagaaaccct gatgacttca aacccaaagg gaagctgtgg gccgatgaca acaggagcgt 3001 tgactacaat gagaaactag actttgaggc ccccccaagc atatggtcta ggattgtgag 3061 ctttggctct ggctggggct tctgggtgtc accaagcctt ttcataacat caactcatgt 3121 aatccccgca ggcataacag aagtatttgg agtccccatc aaacaaattc agatccacaa 3181 atcaggcgaa ttttgccgat tcagattccc aaaaccaatc agaacagatg tgacaggaat 3241 gatcttggaa gaaggtgcgc ctgagggcac cgtggcaact gtgctcatca agcgccccac 3301 cggagagctc atgcctcttg cagccagaat gggaacacac gcaaccatga aaattcaagg 3361 ccgcatggtt ggcggacaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga 3421 cttgggaaca actcctggtg actgtggctg cccttacatc tataaaaggg gcaatgacta 3481 tatagtcatt ggggtgcaca ctgcagcagc ccgtggtgga aacactgtca tctgtgccac 3541 acagggaagt gagggtgagg caactcttga gggtggagat gacaaaggga cgtactgtgg 3601 ggcacccatt ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag 3661 gtcatcgaac acgccccttc caccagggac atatgagcct gcctacctcg gtggccgtga 3721 tccgcgtgtt aagggtgggc cttccctgca gcaggtgatg agagaccagt tgaagccatt 3781 tactgaaccc aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat 3841 catcaatgtc ctcgaacaaa ccctggaccc tccacaaaaa tggacgtacg cacaggcgtg 3901 cgcctcactt gacaaaacca cctccagcgg gcacccccat cacgtccgaa agaatgaatt 3961 ctggaatggt gagaccttca ctggtaaact tgcagaccaa gcatcaaaag caaacctaat 4021 gtttgaggaa gggaaacaca tgacaccagt gtacacagca gcactcaagg acgagctagt 4081 caagactgag aaaatttatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc 4141 caccatgatc cggtgcgcta ggtcatttgg tgggcttatg gacgagatga aggcacactg 4201 catatcactc ccagtccgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga 4261 gaaacattcc agatataaat accactatga tgcagactac tctcgttggg attcaacaca 4321 acagagggca gttctagcag cagccttgga aatcatggtc agattctctg ccgaaccaca 4381 attggcacaa atagtcgctg aggacctgct ggcccccagt gtagtagatg taggagattt 4441 taaaatcaca ataaatgaag ggctcccttc tggtgtgcca tgcacttctc aatggaactc 4501 catcgcacac tggttgctaa ctctctgtgc cttgtctgaa gtcaccaaac tatcccctga 4561 cattatacag gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagtaccga 4621 cataaaattg gaccctgaac agttaaccgc caaattgaag gagtacggcc tgaaaccaac 4681 ccgcccagac aaaaccgagg gacccctgat tatcagtgaa gatttgaacg gtctcacttt 4741 cctccgaagg acggtggctc gtgacccagc tggctggttt ggaaaactgg accaaagctc 4801 aattttgagg cagatgtact ggactagagg accaaatcat gaagacccca atgagacaat 4861 gataccccat tcccaaagac ccatacagct catggcactg cttggtgaag cctctcttca 4921 cggaccctct ttctacagta aaatcagtaa attggttata gctgaactca aagaaggtgg 4981 gatggacttt tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt 5041 gagcacgtgg gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga 5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aacaatgagg 5161 tcatggctct tgaacccgtg gctggtgccg ccttggcagc cccggtcacc ggtcaaacaa 5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag 5281 tctctccccg aaatgcccct ggtgaagtgc tactgaatct agagttgggt ccagaattaa 5341 atccttatct ggcacattta gcaagaatgt acaatgggta tgccggtggg atggaggtgc 5401 aggtcatgtt ggctgggaac gcgttcacag ccggcaagtt ggtcttcgcc gccgtgccac 5461 cccacttccc ggttgaaaac cttagcccac agcaaatcac catgttccct catgtgatca 5521 tagatgttag aaccttggaa cctgttttac taccactccc tgatgttagg aataacttct 5581 tccattataa ccagaaagat gatcccaaga tgagaattgt ggctatgctt tacacccccc 5641 tcaggtctaa tggttcaggt gatgatgtgt tcacagtctc ctgtagagtg ttgactagac 5701 cttcccctga ctttgacttc acatacctgg tgccaccaac agtggagtct aaaacaaagc 5761 cattcaccct cccaatcctc acacttgggg aactttccaa ctctaggttc ccagtgtcca 5821 tagaccagat gtacaccagc cctaatgaaa ttatatcagt gcagtgtcaa aatggtaggt 5881 gcacactgga cggggagctc caagggacaa cacaactcca agtcagtggc atttgtgctt 5941 tcaaaggtga agtgaccgcc catttgcatg acaatgatca cctatataat gtcaccatca 6001 caaacttgaa tgggtcccct tttgatccct ccgaggatat ccctgcccct ttgggtgtac 6061 ctgacttcca gggaagggtt tttggtatca tctcccaaag agataaacac aatagtcctg 6121 gacataatga accagcaaac aggggacacg acgctgtggt ccctacttac acagcacagt 6181 acactccaaa acttggacaa attcaaattg gcacatggca aactgacgac cttacagtca 6241 accagccagt caaatttacc ccagttgggc tcaatgacac tgaacacttt aaccaatggg 6301 ttgtccctag gtatgctggt gccctaaacc tcaatacaaa ccttgcccct tctgttgctc 6361 cagtatttcc aggagagcgt ctgctcttct tcagatcata cattcccctc aagggcggtt 6421 atggaaaccc agccattgat tgcctactac cacaagagtg ggtgcagcac ttctatcagg 6481 aagcagcccc ttcaatgagt gaggtggccc tcgtcagata catcaacccg gacactggtc 6541 gggcactgtt tgaggccaag ctccacagag ctggtttcat gacagtctcg agcaacacca 6601 gtgccccggt ggttgtgcct gccaacgggt acttcagatt tgattcttgg gtgaaccaat 6661 tttattctct cgcccccatg ggaactggga atgggcgtag aagggttcaa taatggctgg 6721 agcttttgta gctggtcttg caggggacgt gctcagcaat gggcttagtt cattaatcaa 6781 tgcaggtgct aatgcaataa atcagagggc agaatttgat tttaatcaaa aattgcagca 6841 aaattctttt aatcatgaca aggagatgtt gcaggctcag attcaggcaa ctaagcagct 6901 gcaggcagac atgatggcta taaaacaagg ggtcttgacc gctggcggct tttcccctgc 6961 tgatgcagcc agaggtgccg tgaacgcgcc catgacacag gcgctggatt ggaatggcac 7021 aaggtattgg gcaccaaact ccatgaggac cacatcttat tccggaaaat tcacatcaac 7081 cgccccagtg aggcaggctg acttccagca cacccaaagc cggccttcga gtggctcctc 7141 tgtgtcttcc tttgccaccc agtcttcaag gccaactctg accacaacca ctggttcctc 7201 acatggcaca gcctcatcaa attcaactcg cagcacaagc ctctcccaat caacggtctc 7261 cagagctaca tctaggatta gtgagtgggt tagagatcaa aatagaaatt tggaacccta 7321 catgcatggt gccttacaga cagcctttgt caccccacct tccagcaggg catctgacgg 7381 gacagtctca accgtcccta aaggtgtttt ggactcctgg acacctgcgt ttaacacccg 7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg //