Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OL468714 | GII.6 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7494
LOCUS OL468714 7494 bp RNA linear VRL 21-NOV-2021
DEFINITION Norovirus GII isolate GII.6/GuangXi/16451061 nonstructural
polyprotein (ORF1) and VP1 (ORF2) genes, complete cds; and VP2
(ORF3) gene, partial cds.
ACCESSION OL468714
VERSION OL468714.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7494)
AUTHORS Cong,X. and Wei,X.
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2021) Viral Diarrhea, National Institute for
Viral Disease Control and Prevention, China CDC, 100 Ying-Xin St.,
Beijing 100000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7494
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII.6/GuangXi/16451061"
/isolation_source="feces"
/host="Homo"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2016"
/note="genotype: GII.6[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UER44608.1"
/translation="MKGASNDATTAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPSVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNNLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFQLQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVTAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLMQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSVLSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSITHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6722
/gene="ORF2"
CDS 5079..6722
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UER44609.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLMAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESNDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..>7494
/gene="ORF3"
CDS 6722..>7494
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UER44610.1"
/translation="MAGAFLAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQ"
ORIGIN
1 gtgaatgaaa ggagcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtatc aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 tcagcactgc ccctcagtta agatcgggac caagacatta acagttcccc ctgagccccc
241 aaatggtgaa gacaccgtgc agtttgatgc gaagtcggaa actgtgcgcg gtttaccaga
301 cttgacgacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cattgagtga
361 aagggagcac agaccagcta ctgaaccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg tccacaagcc
481 tcctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaataatc tggtctgccc agacacgttg aagggccttg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgatct
661 caatgacaca tggcttagca ggagaagcat ctctaggacc accggcttct tcaaaccata
721 ccagtcttgg aataggaaac cccttccaac cgttgatgat ggaaagatca aaaaggtggc
781 caatgcaatt ctctgtgcac ttggatcact gttttcaaaa ccaattaagg acctattggg
841 caaacttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagtcatcc taatggcgga acttttcggc atcttttgga caccgccaga
961 tgtttccagt ttcatagctt ccctgatagg tgattttcaa ttgcaggggc ctgaggacct
1021 ggctgtggag cttgtacccg tggtcatggg tggcatagga atggttctcg gcttcactgc
1081 tgagaagata ggccgcatgc tatcgtccgc tgcatcaaca ctacgggcgt gcaaagactt
1141 ggggaattat gctcttgaca tattgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ctctaagggc gattgaggat gccgtcctgg acatggaagc
1261 tataggaaat aaccatctca caaccctcct caaggacaag gatagcctca cggctttcat
1321 gaagactcta gatctagaag aagagaaggc aaggaagctg tccaccaaat cgtcctcgcc
1381 agacattgtc ggcaccatta atgccatact agctagaata gctgctgcca ggtccctctt
1441 gcacaaggct aaagaagaaa tgttcagcag gatcagaccc gtggttgtca tgatctcggg
1501 tagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggggttgatc attgggacgc
1621 ctacagggga gagagggtgg ttttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagc tggccgacac ctgcccagta actctaaact gtgataggat
1741 tgagaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttagtcaa
1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaagggtcg acttcctggt
1861 ctatgcagag tcaccagaaa ttgagaaggt taagagagac ttccccggcc agcctgacat
1921 gtggaaggac cattttaagc cagacttttc tcacataaaa ctgactctag ccccacaggg
1981 cggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcagct
2101 ccaggggaat gaccttcaaa catataactt tgacaccaac agagtcactg catttaggaa
2161 gctggccgca gacaacaagt atgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttggaag atctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacagaaact ccaaataccg agtctcctcc aatggtaaag gttctgtctc
2341 tgttgacaaa gttgaggacc aaacatccca gaccgcaaac gaagtgggtg cagcactcct
2401 tagactcaga caggcaagag ccagatacta tgtcagctgc ttccaagacc tcgtttacac
2461 tctaatgcag gtcgccggag catcattcgt cgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaagtggc
2581 ccaaggcaga tgggagattg agcccaagga cacagaacca gaaggtaaga agggtaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagt aaaggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca tcgaggaata
2761 cctgcaagac cgggaccgct actatgagga ggtggcagtc gcccgggcga cagaagagga
2821 cttctgcgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaagca
2881 gaggaaggaa gaaagggggg tgcttggttt ggttactggc tcagacatca ggaagagaag
2941 accagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg ggcttctggg tctcatcaaa cctcctgatc acaacaacgc acgtcctacc
3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcagattc acaagtctgg
3181 agagttctgc aggtttagat tcccaagacc aattagacca gatgtcacag ggctcgtgtt
3241 ggaggaaggt gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaaaatac agggtaggac
3361 cgtcggtggc cagatgggaa tgctcctcac aggggcaaat gcgaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgagaacctt ggcacttatt gcggtgctcc
3601 aatcttgggt ccaggcaagg cgcccaaact tagcacgaag accaagttct ggcgttcatc
3661 accagatgct ttgccgccag gcacttatga gcctgcctac ttgggaggta aggaccctag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagag caaaccattg accctgctaa accgtggacc tattcccaag catgcgcctc
3901 actggacaag accacttcca gtggcagccc ccatcatgtc aggaaaaatg accattggaa
3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgaac tagtcaaaac
4081 tgataagatc tacaagaaga taaagaaaag gctcttgtgg gggtcggatc ttggcacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagt atgaaggcaa gctgcatagc
4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaagca
4261 ttctaagtat aggtaccatt atgatgccga ctattccagg tgggactcaa cccagcaaag
4321 gagcgttctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg atttcgtcat
4441 ctcagtccag gagggtctgc catcaggggt cccatgcaca tcacaatgga attcaataac
4501 acactggatc ctaaccttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttga cacaaaaact cagagagtat ggcctggtcc ccacccgacc
4681 tgacaaaact gagggtcccc tcgtaataac tgaagatctc accggcctaa cgttcctgcg
4741 taggtcaatt gcacgggacc cagctgggtg gtttggaaaa ttggaccaag attcaatcct
4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
4861 tcattcccag cgggccacac aacttatggc ccttctcggt gaggcttcac tacatggtcc
4921 ccagttttac aagaaagtta gcaaaatggt tattaatgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggccaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt
5341 atctgagtca tttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 tccctgttga gaacattagt gcagcccaaa ttacaatgtg cccccatgtg attgttgacg
5521 taagacagct tgagccagtg cttttgcccc ttcctgacat aaggaatagg ttctttcatt
5581 ataatcagga aaataccccc cggatgagac ttatggctat gttgtacaca ccccttagag
5641 caaattctgg tgaggatgtg tttacggtgt cttgcagagt tctgacccgc cctgcccctg
5701 actttgagtt cacgtttttg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
5761 tccctattct gactcttgga gagctgtcca attccagatt ccccgctccg atagacatgt
5821 tgtacactga ccccaatgag gcaattgtgg tgcaaccaca aaatggcagg tgcacactag
5881 atggaacact tcaggggacc acccaactgg tacctaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgac ccaacagatg
6061 aggtgccagc agttttaggt gccatagatt tcaaaggaac tgtttttgga gtcgctagcc
6121 aaagaaacac cacagggaac tctataggag caacccgcgc ccatgaagtg cacatagaca
6181 ccacaaaccc tagatacacc ccaaagcttg gctctgtgtt gatgtattct gaatctaatg
6241 attttgatga tggacaaccc acccgcttta cccccattgg catgggagcc gatgattggc
6301 accaatggga attgcccgaa tattctggtc acctcactct taacatgaat ttggcccccg
6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtgccgtctg
6421 ctggtggcta tggatcaggt cacatagatt gcctcatccc acaggagtgg gttcagcatt
6481 tctaccagga ggccgcccca tcacagtccg cggtggctct tatcagatat gtcaaccctg
6541 acactggaag gaacatcttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttt gaggcctggg
6661 tcaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaaatg gtgtcgggtc
6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggtg gaatatgact ttaataagca
6841 gctccaattg gcatccttca aacatgacaa agagatgttg caatcacaag tactggccac
6901 taaacagctc cagcaggaga tgatgaacat aaggcaaggg gtcttgtccg ctggcggctt
6961 ttcccctaca gatgccgcga ggggtgctgt gaacgcgccg atgacaaaaa ttttggattg
7021 gaatgggaca aggtactttg ccccaaatag tatgaagaca accagttatt cgggccagtt
7081 ttccagcaac cctgtgcata ggcaacccac tttaccccgc tctgaacccc caaaaattaa
7141 ggttaatagt gattctgcta gtgtgtatag ttctgcatct actgctcctt cacaatcaac
7201 tcactcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagt
7261 agcttctact ctatctagga ctagtgattg ggtgagagga caaaatgaaa ggcttagccc
7321 gtttatggat ggtgccctcc aaacaacttt tgttacacca ccatcgagca aagcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
7441 cacccatagg cagcctctct tcgcccatgt gcgcaggcga ggggagtcac agat
//