Typing tool
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Typing tool
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Complete norovirus genomes
| OL336384 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5035
ORF2: 5016..6638
ORF3: 6638..7380
LOCUS OL336384 7380 bp RNA linear VRL 19-NOV-2021
DEFINITION Norovirus GII isolate 20051046 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OL336384
VERSION OL336384.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7380)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Emergence of GII.4[P16] Noroviruses Associated Gastroenteritis in
Beijing, China, 2019-2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7380)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2021) Institute for Infectious Disease and
Endemic Disease Control, Beijing Center for Disease Prevention and
Control, Dongcheng District, No. 16 Hepingli Middle Street,
Beijing, Beijing 100013, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7380
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20051046"
/isolation_source="stool specimen"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Oct-2020"
/note="genotype: GII.P16-GII.4"
gene <1..5035
/gene="ORF1"
CDS <1..5035
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UEA14121.1"
/translation="SSGEGLFTNMSSTLKKALGARPKQPAPRDEPQKPPRPPTPELVK
RIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRENREAK
EPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELSPLSLYWRVVYTPQ
YLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQEW
NRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGI
VESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFT
KEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLD
LEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAA
ARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRN
GVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEV
IIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDAFKPDF
SHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTITT
FNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRCRIIYG
GSTYDLESDGKGKVLVEKVKSTSIQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQ
IAGAAFVTTRIARRMNIQELWSKPQLDQNEPETKEEAPKSEDDEFVISSKDIKEEGKK
GKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAK
ATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRRRNPDDFKPKGKLWAD
DNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEAFGVHI
KQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMG
THATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAA
ARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSSNTPLP
PGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINVLE
QTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKANLMFEE
GKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCI
SLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEP
QLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSITHWLLTLCALSEVTKL
SPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLIISEDL
NGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMAL
LGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAP
NFVNEDGVE"
mat_peptide <1..931
/gene="ORF1"
/product="p48"
mat_peptide 932..2029
/gene="ORF1"
/product="NTPase"
mat_peptide 2030..2560
/gene="ORF1"
/product="p22"
mat_peptide 2561..2959
/gene="ORF1"
/product="VPg"
mat_peptide 2960..3502
/gene="ORF1"
/product="Pro"
mat_peptide 3503..5032
/gene="ORF1"
/product="RdRp"
gene 5016..6638
/gene="ORF2"
CDS 5016..6638
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UEA14122.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPSGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6638..>7380
/gene="ORF3"
CDS 6638..>7380
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UEA14123.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNSGHFSTPQPSGALPGRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGA"
ORIGIN
1 atcttcaggt gaaggcttat tcacaaatat gtcttccact ttaaagaaag ccctcggggc
61 taggcccaaa cagcctgccc cgagagacga accacaaaag cccccaagac caccaactcc
121 cgagttggtc aagaggatac cccctcctcc acctaatggc gaagaagaag aagaaccagt
181 cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagttcccca
241 accggacgtg gccaacacag catttagtgt tccaccactg agcttgagag aaaacaggga
301 ggccaaggaa ccgctaacag gggcaatact agagatgtgg gatggagaga tataccacta
361 tggcctgtac gtggagaaag gcttagtgtt gggtgtgcac aaaccacctg cagccataag
421 catggcaaga gtggagttgt cgccgctgtc attgtactgg cgtgtggtgt acactcccca
481 atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgtttc cttacaccgc
541 tttcgacaac aactgctatg ccttttgctg ctgggtgtta gacctcaatg actcatggct
601 tagcaggagg atggtgcaaa gaacaacggg cttcttcagg ccttaccaag agtggaatag
661 aaaacccttg cctactatgg atgactccaa aataaaaaag gtagcaaata tattcctatg
721 ttcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa tcaaaccact
781 aaacatattg aacatcttgg caacgtgtga ctggacgttc gccggaatag tggagtctct
841 gatattgctt gccgagctct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat
901 cgctccctta ctcggggact acgagttaca agggccagaa gacctcgccg ttgaactcgt
961 acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga aaatcggcaa
1021 aatgttgtcc tcagcagcat caacactcag ggcttgtaaa gatcttggtg cctatggctt
1081 agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct
1141 agccatggtg agggccatag aggatgccgt gctagatctt gaggcaatag agaataacca
1201 catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa cactggacat
1261 ggaggaggag aaagccagaa ggttatccac aaaatctgca tcccctgaca tagttgggac
1321 aatcaacgcc ctgctggctc gaatagcagc cgccaggtca ttagtccaca gggccaagga
1381 agagctgtct agcaggataa gaccagtagt tgttatgata tctggcaaac caggaatagg
1441 caaaactcat ctggccaggg aggtggcaag aaaggtggca tccactctca caggggacca
1501 aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggtgagag
1561 agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc tccgcataca
1621 agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa ataagggaaa
1681 agtttttgac agtgaagtca taataattac aacaaacctt gccaacccag ccccacttga
1741 ttatgtcaac tttgaggcct gttccaggag aattgatttc ctggtgtacg ctgaggcacc
1801 agaagtagaa aaggcaaaac gggattttcc tggtcagcca gatatgtgga aggacgcctt
1861 caagccggac ttttcacaca tcaagctaca gcttgcacct cagggcggct ttgacaagaa
1921 tggcaatacc ccacatggga aaggagtgat gaagaccctc actaccggtt ctctgattgc
1981 ccgtgcatca ggcctactgc atgagaggat ggatgaattt gaactccaag gtcccacaat
2041 caccactttc aatttcgacc ggaatagaat cacagcattc agacaattgg ctgcagaaaa
2101 taagtatgga ctggtggaca ccatgaaagt tggcaatcaa ctaaaaggag taaaaaccat
2161 ggaagaactc aaacaagcaa tcagaaatgt gaccatcaag aggtgccgga tcatctacgg
2221 tggttccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa
2281 gagcacctcc atacagacca acaacgagtt ggccggggcc ctgcaccatc ttaaacatgc
2341 ccgaatcagg tactatgtca aatgtgtgca agaagcagtc tattccatca tacaaattgc
2401 cggcgctgcg tttgttacca cacgcattgc acgccgcatg aacatacaag aactctggtc
2461 gaagccacaa ttagatcaaa atgaaccaga gactaaggaa gaggccccca agtcagaaga
2521 tgacgagttc gtcatatctt ctaaggatat caaggaggaa ggaaagaagg gcaaaaacaa
2581 aactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg atgaggagta
2641 tgacgagtac aagaggataa gagaagagag aaacgggaag tactctatag aggaatatct
2701 tcaagataga gacaggtact atgaggagct cgccattgcc aaggccacgg aagaagactt
2761 ctgtgaagag gaggaaatca aaatccgcca gagaattttc cgtcccacca ggaaacaaag
2821 aaaggaagag agggccacat tagggctggt aacaggttca gaaatcagaa gaagaaaccc
2881 tgatgatttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa
2941 tgagaaactg gactttgagg cccccccaag catatggtct agaattgtga gctttggttc
3001 tggctggggc ttctgggtgt caccaagtct gttcataaca tcaacccatg ttatccctgc
3061 aggcataaca gaagcatttg gagtccacat caaacaaatt cagattcaca aatcaggtga
3121 attttgccga ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgatcttgga
3181 agaaggtgcg cctgaaggca ccgtggcaac tgtgctcatc aaacgtccca ccggagagct
3241 catgcctctt gcagccagaa tgggaacaca cgcaaccatg aagattcaag gccgcatggt
3301 tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac
3361 aactcctggt gactgtggct gcccttacat ctataaaagg ggcaatgact atatagtcat
3421 tggggtacac actgcagcag cccgtggtgg aaacaccgtc atctgtgcca cgcagggaag
3481 tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacccat
3541 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa
3601 cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgtg acccgcgtgt
3661 taggggtggg ccctccttac agcaggtaat gagagaccag ttgaagccat tcactgaacc
3721 caggggcaaa cctccaagac caagtgtttt ggaagcagcc aaacaaacca ttatcaatgt
3781 cctcgaacaa accctggatc ctccacaaaa atggacatac gcacaggcgt gtgcctcact
3841 tgacaaaacc acctccagcg ggcatccaca ccacgcccga aagaatgaat tctggaatgg
3901 tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga
3961 agggaaacac atgacaccag tttatacagc agcactcaag gacgagctag tcaagactga
4021 gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat
4081 ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact
4141 cccagtacga gttggcatga atatgaatga agatggccca ataatatttg agaaacattc
4201 cagatacaaa taccactatg atgcagacta ctctcgctgg gattcaacac aacagagggc
4261 agtattagca gcagccttgg aaatcatggt cagattctct gcagaaccac aattggcaca
4321 aatagtcgct gaggatctac tggcccctag tgtagtagat gtaggagact ttaaaatcac
4381 aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact ccataacaca
4441 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca
4501 agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt
4561 ggaccctgaa cagttgaccg ccaagttgaa ggagtacggc ctgaaaccaa ctcgcccaga
4621 caagaccgag ggacccctga tcatcagtga agatttgaac ggactcactt tcctccgaag
4681 gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagtt caattttgag
4741 gcagatgtac tggactagag ggccaaatca tgaagacccc aatgagacaa tgatacccca
4801 ctctcagaga cccatacagc tcatggcact gcttggtgaa gcttctcttc acggaccctc
4861 tttctacagt agaatcagta aattggtcat aactgaactt aaagaaggtg ggatggactt
4921 ttacgtgcca aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg
4981 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgcca
5041 acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag gttatggctt
5101 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5161 acccctggat tagaaataat tttgtacaag cccctggtgg ggagttcaca gtatccccta
5221 gaaatgctcc aggtgaaata ctatggagcg cgcccctagg ccctgaccta aacccctacc
5281 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5341 tcgcggggaa cgcgttcacc gccgggaaga ttatatttgc agcagtccca ccaaattttc
5401 caactgaagg tttaagccct agccaggtca ctatgttccc ccacataata gtagatgtta
5461 gacaattgga acctgtgctg atccccttac ccgatgttag gaataatttc tatcattaca
5521 atcagtcaaa tgatcccact attaagttga tagcaatgtt gtacacacca cttagggcta
5581 ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgaga ccatcccctg
5641 actttgattt catattttta gtaccaccca cagttgagtc aagaactaaa ccattctctg
5701 tcccagtttt aactgttgag gagatgacca attcaagatt ccccatccct ttggaaaagt
5761 tgtttacagg ccccagcagt gcatttgtcg ttcaaccaca aaacggcaga tgcacaactg
5821 atggcgtgct tctaggcacc acccaacttt ctcctgtcaa catctgcacc ttcagagggg
5881 atgtcacaca catcacgggt agtcacaatt acactatgaa tttggcttct caaaattgga
5941 acaactatga tccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga
6001 agattcaagg catgctcacc cagaccacaa gggcagatgg ttcaacacgc ggtcacaaag
6061 ctacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa
6121 ctgacacaaa ccatgatttt gaagccaatc aaaacacaaa gttcacccca gttggtgtca
6181 tccaagatgg tagcaccacc catcgaaacg aaccccagca gtgggtgctc ccaagttact
6241 caggtagaaa tactcacaat gtacatttgg cccccgctgt agcccccacc tttccgggtg
6301 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6361 tggactgtct gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac
6421 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6481 gcaagcttca caaatcaggc tatgtcacag tggctcacac tggccaacat gacttggtta
6541 tcccccctag tggttacttt aggtttgatt cctgggtcaa ccagttctac acgcttgccc
6601 ccatgggaaa tggaacgggg cgtagacgtg cagtataatg gctggagctt tctttgctgg
6661 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc
6721 catcaaccaa aaggttgagt ttgaaaataa cagaaaattg caacaagcat cctttcaatt
6781 tagcagcaat ttgcaacagg cttcctttca acatgataaa gagatgctcc aagcacaaat
6841 tgaggccacc aaaaagctac aacaggaaat gatgagagtt aagcaggcaa tgctcctaga
6901 gggtgggttc tctgagacag atgcggcccg cggggcaatt aacgccccca tgacaaaggc
6961 tttggactgg agcgggacaa ggtactgggc tccagatgct agaattacaa catacaattc
7021 aggccacttt tccacccctc aaccatcggg ggcactgcca ggaagagcta atcttaggga
7081 tgctgtccct gctcggggac cctccaccaa atcttctaac tcttctgctg ccacttctgt
7141 atactcaaat caaactactt caacgagact tggttctaca gctggttctg gaaccagtgt
7201 ctcgagcctc ccgtcgactg caaggactag gagctgggtt gaggatcaaa ataggaattt
7261 gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat ctagcagatc
7321 ctctagccaa ggcacagtct caaccgtgcc taaagaaatt ttggactcct ggactggcgc
//