Typing tool
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Typing tool
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Complete norovirus genomes
| OL336383 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..4989
ORF2: 4970..6592
ORF3: 6592..7330
LOCUS OL336383 7330 bp RNA linear VRL 19-NOV-2021
DEFINITION Norovirus GII isolate 20062001 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OL336383
VERSION OL336383.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7330)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Emergence of GII.4[P16] Noroviruses Associated Gastroenteritis in
Beijing, China, 2019-2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7330)
AUTHORS Li,W., Yan,H., Shen,L., Liu,B., Tian,Y., Wang,Y., Jia,L., Gao,Z.
and Wang,Q.
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2021) Institute for Infectious Disease and
Endemic Disease Control, Beijing Center for Disease Prevention and
Control, Dongcheng District, No. 16 Hepingli Middle Street,
Beijing, Beijing 100013, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7330
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20062001"
/isolation_source="stool specimen"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Aug-2020"
/note="genotype: GII.P16-GII.4"
gene <1..4989
/gene="ORF1"
CDS <1..4989
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UEA14118.1"
/translation="KALGARPKQPAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEEP
VIRYEVKSGVSGLPELTTVPQPDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEI
YHYGLYVEKGLVLGVHKPPAAISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEA
FPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKK
VANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGIVESLILLAELFGVFW
TPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTL
RACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKD
KDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAAARSLVHRAKEELSSR
IRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVL
WDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDY
VNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDK
NGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLA
AENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVL
VEKVKNTSIQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRM
NIQELWSKPQLDQNESETKEEAPKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFS
SKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIR
QRIFRPTRKQRKEERATLGLVTGSEIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEA
PPSIWSRIVSFGSGWGFWVSPSLFVTSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFR
FPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQ
MGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSE
GEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPR
VRGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINFLEQTLDPPQKWTYAQAC
ASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDE
LVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGP
IIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSV
VDVGDFKITINEGLPSGVPCTSQWNSITHWLLTLCALSEVTKLSPDIIQANSMFSFYG
DDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPA
GWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSRI
SKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..885
/gene="ORF1"
/product="p48"
mat_peptide 886..1983
/gene="ORF1"
/product="NTPase"
mat_peptide 1984..2514
/gene="ORF1"
/product="p22"
mat_peptide 2515..2913
/gene="ORF1"
/product="VPg"
mat_peptide 2914..3456
/gene="ORF1"
/product="Pro"
mat_peptide 3457..4986
/gene="ORF1"
/product="RdRp"
gene 4970..6592
/gene="ORF2"
CDS 4970..6592
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UEA14119.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6592..>7330
/gene="ORF3"
CDS 6592..>7330
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UEA14120.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNSGHFSTPQPSGALPGRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWT"
ORIGIN
1 aaagccctcg gggctaggcc caaacagcct gccccgagag acgaaccaca aaagccccca
61 agaccaccaa ctcccgagtt ggtcaagagg ataccccctc ctccacctaa tggcgaagaa
121 gaagaagaac cagtcattag gtatgaggtt aagagtgggg tctctggcct gcccgagctc
181 acaacagttc cccaaccgga cgtggccaac acagcattta gtgttccacc actgagcttg
241 agagaaaaca gggaggccaa ggaaccgcta acaggggcaa tactagagat gtgggatgga
301 gagatatacc actatggcct gtacgtggag aaaggcttag tgttgggtgt gcacaaacca
361 cctgcagcca taagcatggc aagagtggag ttgacgccgc tgtcattgta ctggcgtgtg
421 gtgtacactc cccaatacct catctcccct gaaactctca ggaggctcaa cggagaggcg
481 tttccttaca ccgctttcga caacaactgc tatgcctttt gctgctgggt gttagacctc
541 aatgattcat ggcttagcag gaggatggtg caaagaacaa cgggcttctt cagaccttac
601 caagagtgga atagaaaacc cttgcctacc atggatgact ccaaaataaa gaaggtagca
661 aatatattcc tatgctcatt gtccacatta ttcaccagac ccataaaaga cctcatagga
721 aaaatcaaac cactaaacat attgaacatc ttggcaacgt gtgactggac gtttgccgga
781 atagtggagt ctctgatatt gcttgccgaa ctcttcggag ttttctggac acccccagat
841 gtgtctgcta tgatcgctcc cttactcggg gactacgagt tacaagggcc agaagacctc
901 gccgttgaac tcgtacctgt ggtaatggga gggattggtt tggtgttggg attcaccaaa
961 gagaaaatcg gcaaaatgtt gtcctcagca gcatcaactc tcagggcttg taaagatctt
1021 ggtgcctatg gcttagagat actcaaattg gtcatgaagt ggttcttccc aaagaaagag
1081 gaggccaatg agctagccat ggtgagggcc atagaggatg ccgtactaga tcttgaggca
1141 atagagaata accacatgac aaccctgttg aaagacaaag acagcttagc aacatacatg
1201 aaaacactgg acatggagga ggagaaagcc agaaggttat ccacaaaatc tgcatcccct
1261 gacatagttg ggacaatcaa cgccctgctg gctcgaatag cagccgccag gtcattagtc
1321 cacagggcca aggaagagct gtctagcagg ataagaccag tagttgttat gatatctggc
1381 aaaccaggaa taggcaaaac tcatctggcc agggaggtgg caagaaaggt ggcatccact
1441 ctcacagggg atcaaagagt cggactcata ccaagaaacg gtgtggacca ttgggatgca
1501 tacaaaggtg agagagtcgt gctgtgggac gactatggca tgagtaaccc cattcatgat
1561 gctctccgta tacaagaatt ggctgatacg tgtcccctta ccttaaattg tgacagaatt
1621 gaaaataagg gaaaagtttt tgacagtgaa gtcataataa ttacaacaaa ccttgccaac
1681 ccagccccac ttgattatgt caactttgag gcctgttcca ggagaattga tttcctggtg
1741 tacgctgagg caccagaagt agaaaaggca aaacgggatt ttcctggtca gccagatatg
1801 tggaaggacg ccttcaagcc ggacttttca cacatcaagc tacagcttgc acctcagggc
1861 ggctttgaca agaatggcaa taccccacat gggaaaggag tgatgaagac cctcactacc
1921 ggttctctga ttgcccgtgc atcaggccta ctgcatgaga ggatggatga atttgaactc
1981 caaggtccca caatcaccac tttcaatttc gaccggaata gaatcacagc attcagacaa
2041 ttggctgcag aaaacaagta tggactggtg gacaccatga aagttggcaa tcaactaaaa
2101 ggagtgaaaa ccatggaaga actcaaacaa gcaatcagaa atgtgaccat caagaggtgc
2161 cggatcatct acggtggctc cacgtatgac cttgaatctg atggcaaggg caaagttttg
2221 gtggaaaagg tcaagaacac ctctatacag accaacaacg agttggccgg ggccctgcac
2281 catcttaaac atgcccgaat caggtactat gtcaaatgtg tgcaagaagc agtctattcc
2341 atcatacaaa ttgccggcgc tgcgtttgtc accacgcgca ttgcacgccg catgaacata
2401 caagaactct ggtcgaagcc acaattagat caaaatgaat cagagactaa ggaagaggcc
2461 cccaagtcag aagatgacga gttcatcata tcttctaagg atatcaagga ggaaggaaag
2521 aagggcaaaa acaaaactgg ccgtggcaag aaacacactg cattctccag caagggcttg
2581 agcgatgagg agtatgacga gtacaagagg ataagagaag agagaaacgg gaagtactct
2641 atagaggagt atcttcaaga cagagacagg tactatgagg agctcgccat tgccaaggcc
2701 acggaagaag acttctgtga agaggaggag atcaaaatcc gtcagagaat tttccgtccc
2761 accaggaaac aaagaaagga agagagggcc acattagggc tggtaacagg ttcagaaatc
2821 agaagaagaa accctgatga tttcaaaccc aaagggaagc tgtgggccga tgacaacaga
2881 agtgttgact acaatgagaa actggacttt gaggcccctc caagcatatg gtctagaatt
2941 gtgagctttg gttctggctg gggcttctgg gtatcaccaa gcctgttcgt aacatcaact
3001 catgttatcc ctgcaggcat aacagaagca tttggagtcc ccatcaaaca aattcagatc
3061 cacaaatcag gtgaattttg ccgattcaga ttcccaaaac caattagacc agatgtgaca
3121 ggaatgatct tggaagaagg tgcgcctgaa ggcaccgtgg caactgtgct catcaaacgc
3181 cccaccggag agctcatgcc tcttgcagcc agaatgggaa cacacgcaac catgaagatt
3241 caaggccgca tggttggcgg acagatgggt atgttgctca ctggatcaaa tgctaaagga
3301 atggatttgg gaacaactcc tggtgactgt ggctgccctt acatctataa aaggggcaat
3361 gactatatag tcattggggt acacactgca gcagcccgtg gtggaaacac cgtcatctgt
3421 gccacacagg gaagtgaggg tgaggcaact cttgagggtg gagatgacaa aggaacatac
3481 tgtggggcac ccattctagg ccctgggggt gcaccaaaat tgagcaccaa aaccaaattt
3541 tggaggtcat cgaacacgcc ccttccacca gggacatatg agcctgccta cctcggtggc
3601 cgtgacccgc gtgttagggg tgggccctcc ttacagcagg taatgagaga ccagttaaag
3661 ccattcactg aacccagggg caaacctcca agaccaagtg ttttggaagc agccaaacaa
3721 accattatca atttcctcga acaaaccctg gatcctccac aaaaatggac atacgcacag
3781 gcgtgtgcct cacttgacaa aaccacctcc agcgggcatc cacatcacgc ccgaaagaat
3841 gaattctgga atggtgagac cttcactggt aaattggcag accaagcatc aaaagcaaac
3901 ctaatgtttg aggaagggaa acacatgaca ccagtgtata cagcagcact caaggacgag
3961 ctagtcaaga ctgagaaaat ctatggaaag atcaagaaga gactgctctg gggctctgac
4021 ttgtccacca tgatccggtg cgctaggtca tttggtgggc tcatggacga gatgaaggca
4081 cactgcatat cactcccagt acgagttggc atgaatatga atgaagatgg cccaataata
4141 tttgagaaac attccagata caaataccac tatgatgcag actactctcg ctgggattca
4201 acacaacaga gggcagtatt agcagcagcc ttggaaatca tggtcagatt ctctgcagaa
4261 ccacaattgg cacaaatagt cgctgaggat ctactggccc ctagtgtagt agatgtagga
4321 gactttaaaa tcacaataaa tgaagggctc ccatctggtg tgccatgcac ttctcaatgg
4381 aactccatca cacactggct gctaactctc tgtgccttgt ctgaagtcac caaactgtcc
4441 cctgacatta tacaagcaaa ttccatgttc tcattttacg gtgatgacga gattgtcagc
4501 accgacataa aattggaccc tgaacagttg accgccaagt tgaaggagta cggcctgaaa
4561 ccaactcgcc cagacaagac cgagggaccc ctgatcatca gtgaagattt gaacggactc
4621 actttcctcc gaaggacggt gactcgtgac ccagctggct ggtttggaaa actggaccaa
4681 agttcaattt tgaggcagat gtactggact agagggccaa atcatgaaga ccccaatgag
4741 acaatgatac cccattctca gagacccata cagctcatgg cactgcttgg tgaagcctct
4801 ctccacggac cctctttcta cagtagaatc agtaaattgg tcataactga actcaaagaa
4861 ggtgggatgg acttttacgt gccaaggcag gaacccatgt tcaggtggat gaggttttct
4921 gacttgagca cgtgggaggg cgatcgcaat ctggctccca attttgtgaa tgaagatggc
4981 gtcgagtgac gccaacccat ctgatgggtc cgcagccaac ctcgtaccag aggtcaacaa
5041 tgaggttatg gctttggagc ccgttgttgg tgccgctatt gcggcacctg tagcgggcca
5101 acaaaatgta attgacccct ggattagaaa taattttgta caagcccctg gtggggagtt
5161 tacagtatcc cctagaaatg ctccaggtga aatactatgg agcgcgcccc taggccctga
5221 cctaaatccc tacctatccc atttagccag aatgtacaat ggttatgcag gtggttttga
5281 agtgcaggta attctcgcgg ggaacgcgtt caccgccggg aagattatat ttgcagcagt
5341 cccaccaaat ttcccaactg aaggtttaag ccctagccag gtcactatgt tcccccacat
5401 aatagtagat gttagacaat tggaacctgt gctgatcccc ttacccgatg ttaggaataa
5461 tttctatcat tacaatcagt caaatgattc cactattaag ttgatagcaa tgttgtacac
5521 accacttagg gctaataatg ctggggatga tgttttcaca gtttcgtgcc gagttctcac
5581 gagaccatcc cccgattttg atttcatatt tttagtacca cccacagttg agtcaagaac
5641 taaaccattc tctgtcccag ttttaactgt tgaggagatg accaattcaa gattccccat
5701 ccctttggaa aagttgttta caggccccag cagtgcattt gttgttcaac cacaaaacgg
5761 cagatgcaca actgatggcg tgcttctagg caccacccaa ctttctcccg tcaacatctg
5821 caccttcaga ggggatgtca ctcacatcac aggtagtcac aactacacta tgaatttggc
5881 ttctcaaaat tggaacaact atgatccaac agaagaaatc ccagcccctc taggaactcc
5941 agattttgtg gggaagattc aaggcatgct cacccagacc acaaggacag atggttcaac
6001 acgcggtcac aaagctacag tgtacactgg gagcgccgac tttgctccaa aactgggtag
6061 agttcaattt gaaactgaca caaaccatga ttttgaagcc aatcaaaaca caaagttcac
6121 cccagtcggt gtcatccaag atggtagcac cacccaccga aacgaacccc agcagtgggt
6181 gctcccaagt tactcaggca gaaatactca caatgtacat ttggcccccg ctgtagcccc
6241 cacctttccg ggtgagcaac ttctcttctt cagatccacc atgcccggat gcagcgggta
6301 ccccaacatg gatttggact gtctgctccc ccaggaatgg gtgcagtact tctaccaaga
6361 ggcagcccca gcacaatctg atgtggctct gctaagattt gtgaatccag acacaggtag
6421 ggttttgttt gagtgcaagc ttcacaaatc aggctatgtt acagtggctc acactggcca
6481 acatgatttg gttatccccc ccaatggtta ctttaggttt gattcctggg tcaaccagtt
6541 ctacacgctt gcccccatgg gaaatggaac ggggcgtaga cgtgcagtat aatggctgga
6601 gctttctttg ctggattggc atctgatgtc cttggctctg gacttggttc ccttatcaat
6661 gctggggctg gggccatcaa ccaaaaggtt gaatttgaaa ataacagaaa attgcaacaa
6721 gcatcctttc aatttagcag caatttgcaa caggcttcct ttcaacatga taaagagatg
6781 ctccaagcac aaattgaggc caccaaaaag ctacaacagg aaatgatgag agttaagcag
6841 gcaatgctcc tagagggtgg gttctctgag acagatgcag cccgcggggc aattaacgcc
6901 cccatgacaa aggctttgga ctggagcggg acaaggtact gggctccaga tgctagaatt
6961 acaacataca attcaggcca cttttccacc cctcaaccat cgggggcact gccaggaaga
7021 gctaatctta gggatgctgt ccctgctcgg ggaccctcca ccaaatcttc taactcttct
7081 gctgccacct ctgtgtactc aaatcaaact acttcaacga gacttggttc tacagctggt
7141 tctggaacca gtgtctcgag cctcccgtcg actgcaagga ctaggagctg ggttgaggat
7201 caaaatagga atttgtcacc tttcatgagg ggggcccaca acatatcatt tgtcacccca
7261 ccatctagca gatcctctag ccaaggcaca gtctcaaccg tgcctaaaga aattttggac
7321 tcctggactg
//