Typing tool
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Typing tool
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Complete norovirus genomes
| OK376257 | GII.2 | |
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| GII.P16 |
ORF1: 1..4589
ORF2: 4570..6198
ORF3: 6198..6977
LOCUS OK376257 7021 bp RNA linear VRL 11-OCT-2021
DEFINITION Norovirus GII isolate CHN-GII17 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION OK376257
VERSION OK376257.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7021)
AUTHORS Li,W., Tong,Y. and Mao,P.
TITLE Direct Submission
JOURNAL Submitted (05-OCT-2021) Fifth Medical Center, Chinese PLA General
Hospital, West Fourth Ring Middle Road, Beijing 100039, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Newbler v. 2.3; CLC Genomic Workbench v.
9.0
Sequencing Technology :: Sanger dideoxy sequencing; Illumina;
IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7021
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="CHN-GII17"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Oct-2018"
/note="genotype: GII.2"
gene <1..4589
/gene="ORF1"
CDS <1..4589
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UBX26733.1"
/translation="SLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVL
DLNDSWLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIK
DLIGKIKPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYEL
QGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVM
KWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKA
RRLSTKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTH
LAREVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQE
LADTCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEA
PEVEKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGS
LIARASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLK
GVKTMEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGA
LHHLKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESET
KEEAPKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFW
VSPSLFITSTHVSPAGITEEFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGA
PEGTVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAP
ILGPGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHIRKN
EFWNGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGRIKKRLLWG
SDLSTMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYS
RWDSTQQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKITINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTA
KLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWT
RGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVP
RQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..485
/gene="ORF1"
/product="p48"
mat_peptide 486..1583
/gene="ORF1"
/product="NTPase"
mat_peptide 1584..2114
/gene="ORF1"
/product="p22"
mat_peptide 2115..2513
/gene="ORF1"
/product="VPg"
mat_peptide 2514..3056
/gene="ORF1"
/product="Pro"
mat_peptide 3057..4586
/gene="ORF1"
/product="RdRp"
gene 4570..6198
/gene="ORF2"
CDS 4570..6198
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UBX26734.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6198..6977
/gene="ORF3"
CDS 6198..6977
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UBX26735.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQAGFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTTSSNSTRSTSLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 tgtcattgta ctggcgtgtg gtgtacactc cccaatacct catctcccct gaaaccctca
61 ggaggctcaa cggagaggca ttcccttaca ccgcctttga caacaactgc tatgcctttt
121 gctgctgggt gttagacctc aatgactcat ggcttagcag gaggatgata caaagaacaa
181 cgggcttctt cagaccttac caagagtgga acagaaaacc cctgcctacc atggatgact
241 ccaaaattaa gaaggtagca aatatattcc tatgttcatt gtccacatta ttcaccagac
301 ccataaaaga cctcatagga aaaattaaac cgttgaacat attgaatatc ctggcaacgt
361 gtgactggac ttttgccgga atagtggagt ctctgatatt atttgctgaa ctcttcggag
421 ttttctggac acccccagat gtgtctgcta tgatcgctcc cttactcggg gactacgagt
481 tgcaagggcc agaagacctc gccgttgagc tcgtacctgt ggtaatgggg gggattggct
541 tggtgttggg attcaccaaa gagaaaattg gcaaaatgtt gtcctcagca gcatcaacac
601 tcagggcttg caaagatctt ggtgcctatg gcttagagat actcaaattg gtcatgaagt
661 ggttcttccc aaagaaagag gaggccaatg agctagctat ggtgagggcc atagaggatg
721 ctgtattaga ccttgaggca atagaaaata accacatgac aaccctgttg aaagacaaag
781 acagcttagc aacatacatg aaaacactgg acatggagga ggagaaagcc aggaggttgt
841 ccacaaaatc tgcatcccct gacatagttg ggacaatcaa cgccctgctg gctcgaatag
901 cagcggccag gtcattagtc cacagggcca aggaagagct atctagtagg ataaggccag
961 tagttgttat gatatctggc aagccaggaa taggcaaaac tcatctggcc agggaggtgg
1021 caagaaaggt ggcatccact ctcacagggg atcaaagagt cggactcata ccacgaaatg
1081 gtgtggacca ttgggatgca tacaaaggtg agagagtcgt gctgtgggac gactatggca
1141 tgagtaaccc tattcatgat gctcttcgca tacaagaatt ggctgatacg tgtcccctta
1201 ccttaaattg tgacagaatt gaaaataagg gaaaagtttt tgacagtgaa gtcataataa
1261 ttacaacaaa ccttgccaat ccagccccac ttgattatgt caactttgag gcctgttcca
1321 ggagaattga tttcctggtg tacgctgagg caccagaagt agaaaaggca aaacgggact
1381 ttcctggtca gccagatatg tggaaggacg ccttcaagcc ggacttttca cacatcaagc
1441 tacagcttgc accccagggc ggctttgaca agaatggcaa caccccacat gggaaagggg
1501 tgatgaagac cctcactacc ggttctctga ttgcccgtgc atcaggccta ctgcatgaga
1561 ggatggatga atttgaactc caaggcccca cagtcaccac cttcaatttc gaccgaaaca
1621 gaatcacggc attcagacaa ttggctgcag aaaacaagta tggattggtg gataccatga
1681 aagttggcaa tcaattaaaa ggagtgaaaa ccatggaaga actcaaacaa gcaatcagga
1741 atgtgaccat caagaggtgc cagatcatct acggaggttc cacgtatgac cttgaatctg
1801 atggcaaggg caaagttttg gtggaaaagg tcaagaacac ctctgtacag accaataacg
1861 agttggctgg ggccctgcac catctcaaac atgcccgaat caggtactat gtcaaatgtg
1921 tgcaagaagc agtctattcc atcatacaaa ttgccggcgc tgcgtttgtc accacgcgca
1981 tcgcacgccg catgaacata caagaactct ggtcaaagcc acaactagat caaaatgaat
2041 cagagactaa ggaagaggcc cccaagtcag aagatgacga attcatcata tcttctaagg
2101 acatcaagga ggaaggaaag aagggcaaaa acaaaactgg tcgtggcaag aaacacactg
2161 cattctccag caagggcttg agcgatgagg agtatgacga gtacaagagg ataagagaag
2221 agagaaatgg gaagtactct atagaggagt atcttcaaga cagagacagg tactatgagg
2281 agctcgccat tgccaaggcc acggaggaag acttctgtga agaggaggag atcaaaatcc
2341 gtcagagaat tttccgtccc accagaaaac aaagaaagga agagagggcc acattagggc
2401 tagtaacagg ttcagaaatc agaaaaagaa accctgatga cttcaaaccc aaagggaagc
2461 tgtgggccga tgacaacagg agtgttgact acaatgagaa actggacttt gaggcccccc
2521 caagcatatg gtctaggatt gtgagctttg gctctggctg gggcttctgg gtgtcaccaa
2581 gccttttcat aacatcaact catgtaagcc ccgcgggcat aacagaagaa tttggagtct
2641 ccatcaaaca aatccagatc cacaaatcag gcgaattttg ccgattcaga ttcccaaaac
2701 caattagacc agatgtgaca ggaatgatct tggaagaagg tgcgcctgag ggcaccgtgg
2761 caactgtgct catcaaacgt cccaccggag agctcatgcc tcttgcagcc agaatgggaa
2821 cacacgcaac catgaaaatt caaggccgca tggttggcgg acagatgggt atgttgctca
2881 ctggatcaaa tgctaaagga atggacttgg gaacaactcc tggtgactgt ggctgtcctt
2941 acatctataa aaggggcaat gactatatag tcattggggt gcacactgca gcagcccgtg
3001 gtggaaacac tgtcatctgt gccacacagg gaagcgaggg tgaggcaact cttgagggtg
3061 gagatgacaa agggacatac tgtggggcac ccattctagg ccctgggggt gcaccaaaat
3121 tgagcaccaa aaccaaattt tggaggtcat cgaacacgcc ccttccacca gggacatatg
3181 agcctgccta cctcggtggc cgtgatccgc gtgttaaggg tgggccttcc ctgcagcagg
3241 tgatgagaga ccagttgaag ccattcactg aacccagggg caaacctcca agaccaagtg
3301 tattggaagc agccaaacaa accatcatca atgtcctcga acaaaccctg gaccctccac
3361 aaaaatggac atacgcacag gcgtgcgcct cacttgacaa aaccacttcc agcgggcacc
3421 cccatcacat ccgaaagaat gaattctgga atggtgagac cttcactggt aaactggcag
3481 accaagcatc aaaagcaaac ctaatgtttg aggaagggaa acacatgaca ccagtgtaca
3541 cagcagcact caaggacgag ctagtcaaga ctgagaaaat ttatggaagg atcaagaaga
3601 gactgctctg gggctctgac ttgtccacca tgatccggtg cgctaggtca tttggtgggc
3661 ttatggacga gatgaaggca cactgcatat cactcccagt tcgagttggc atgaatatga
3721 atgaagatgg cccaataata tttgagaaac attccagata caaatatcac tatgatgcag
3781 actactctcg ttgggattca acacaacaga gggcagttct agcagcagcc ttggaaatca
3841 tggttagatt ctctgcagaa ccacaattgg cacaaacagt cgctgaggat ctgctggccc
3901 ctagtgtagt agatgtggga gactttaaaa tcacaataaa tgaagggctc ccttctggtg
3961 tgccatgcac ttctcaatgg aactccatcg cacactggct gctaactctc tgtgccttgt
4021 ctgaagtcac caaactatcc cctgacatta tacaggcaaa ttccatgttc tcattttacg
4081 gtgatgacga gattgtcagt accgacataa aattggaccc tgaacagtta accgccaaat
4141 tgaaggagta cggcctgaaa ccaacccgcc cagacaaaac cgagggaccc ctgattatca
4201 gtgaagattt gaacggtctc actttcctcc gaaggacggt gactcgtgac ccagctggct
4261 ggttcggaaa actggaccaa agctcaattt tgaggcagat gtattggact agaggaccaa
4321 atcatgaaga ccccaatgag acaatgatac cccattccca aagacccata cagctcatgg
4381 cactgcttgg tgaagcctct cttcacggac cctctttcta cagtaaaatc agtaaattgg
4441 tcataactga actcaaagaa ggtgggatgg acttttacgt gccaaggcag gaacccatgt
4501 tcaggtggat gaggttttct gacttgagca cgtgggaggg cgatcgcaat ctggctccca
4561 attttgtgaa tgaagatggc gtcgaatgac gccgctccat ctactgatgg tgcagccggc
4621 ctcgtgccag aaagtaacaa tgaggtcatg gctcttgaac ccgtggctgg tgccgccttg
4681 gcagccccag tcaccggtca aacaaatatt atagaccctt ggattagagc aaattttgtc
4741 caggccccca atggtgaatt tacagtctct ccccgaaatg cccctggtga agtgctactg
4801 aatctagagt tgggtccaga attaaatcct tatctggcac atttagcaag aatgtacaat
4861 gggtatgccg gtgggatgga ggtgcaggtc atgttggctg ggaacgcgtt cacagccggc
4921 aagttggtct tcgccgccgt gccaccccac ttcccggttg aaaaccttag cccacagcaa
4981 atcaccatgt tccctcatgt gatcatagat gtgaggacct tggaacctgt tttgttacca
5041 ctccctgatg ttaggaataa cttcttccat tataaccaga aagatgatcc caagatgaga
5101 attgtggcta tgctttatac ccccctcagg tctaatggtt caggtgatga tgtgtttaca
5161 gtctcctgta gagtgttgac tagaccttcc cctgactttg acttcacata cctggtgcca
5221 ccaacagtgg agtctaaaac aaagccattc accctcccaa tccttacact tggggaactt
5281 tccaattcca ggttcccagt gtccatagac cagatgtaca ccagtcctaa tgaaattata
5341 tcagtgcagt gtcaaaatgg taggtgcaca ctggacgggg agctccaagg gacaacacaa
5401 ctccaagtca gtggcatttg tgctttcaaa ggtgaagtga ccgcccactt gcatgacaat
5461 gatcacctat ataatgtcac catcacaaac ttgaatgggt ccccttttga tccctccgag
5521 gatatccctg cccctttggg tgtgcctgac ttccagggaa gggtctttgg tatcatctcc
5581 caaagagata aacacaatag tcctgggcat aatgaaccag caaacagggg acacgacgct
5641 gtggtcccta cttacacagc acagtacact ccaaaacttg gacaaattca aattggcaca
5701 tggcaaactg acgaccttac agtcaaccaa ccagtcaaat tcaccccagt tggactcaat
5761 gacactgaac actttaacca atgggtagtc cctaggtatg ctggtgccct aaacctcaat
5821 acaaaccttg ccccttctgt tgctccagta tttccaggag agcgcctgct cttcttcaga
5881 tcatacattc ccctcaaggg cggttatgga aacccagcca ttgattgcct actaccacaa
5941 gagtgggtgc agcacttcta tcaggaagca gccccttcaa tgagtgaggt ggccctcgtc
6001 agatacatca acccggacac tggtcgggca ctgtttgagg ccaagctcca tagagctggt
6061 ttcatgacag tctcgagcaa caccagtgcc ccggtggttg tgcctgccaa cgggtacttc
6121 agatttgatt cttgggtgaa ccaattttat tctcttgccc ccatgggaac tgggaatggg
6181 cgtagaaggg ttcaataatg gctggagctt ttgtagctgg tcttgcaggg gacgtgctca
6241 gcaatgggct tagttcatta atcaatgcag gtgctaatgc aataaatcag agggcagaat
6301 ttgattttaa ccaaaaattg cagcaaaatt cttttaatca tgataaggag atgttgcagg
6361 ctcagattca ggcaactaag cagctgcagg cagacatgat ggctataaaa caaggggtct
6421 tgaccgctgg cggcttttcc cctgctgatg cagccagagg tgctgtgaac gcgcccatga
6481 cacaggcgct ggattggaat ggcacaaggt attgggcacc aaactccatg aggaccacat
6541 cttattctgg aaaattcaca tcaaccgccc cagtgaggca ggctggcttc cagcacaccc
6601 aaagccggcc ttcgagtggc tcctctgtgt cttcctttgc cactcagtct tcaaggccaa
6661 ctctgaccac aaccactggt tcctcacatg gcacaacctc atcaaattca actcgcagca
6721 caagcctctc ccaatcaacg gtctccagag ctacatctag gactagcgag tgggttaggg
6781 atcagaacag aaatttggaa ccctacatgc atggtgcctt acagacagcc tttgtcaccc
6841 caccttccag cagggcatct gacgggacag tctcaaccgt ccctaaaggt gttttggact
6901 cctggacacc tgcgtttaac actcgcaggc agccgctttt tgcacacctc cgtaagaggg
6961 gggagtcaca agcttagtga aaaggtgaaa atttgtttag gattaattga tttcaccttt
7021 t
//