Typing tool
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Typing tool
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Complete norovirus genomes
| OK012404 | GII.2 | |
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| GII.P16 |
ORF1: 1..4996
ORF2: 4977..6605
ORF3: 6605..7384
LOCUS OK012404 7418 bp RNA linear VRL 08-SEP-2021
DEFINITION Norovirus GII isolate GII/Hu/RU/2017/GII.2P16/Nizhny_Novgorod2079
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION OK012404
VERSION OK012404.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7418)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F. and Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2021) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v. 3.11.1.
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7418
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2017/GII.2P16/Nizhny_Novgorod2079"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Russia: Nizhny_Novgorod"
/collection_date="04-Sep-2017"
/note="genotype: GII.2[P16]"
gene <1..4996
/gene="ORF1"
CDS <1..4996
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QZU27211.1"
/translation="LKKALGARPKQPTPRDKPQKPPRPPTPELVKRIPPPPPNGEEEE
EPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRENREAKEPLTGAILEMWDG
EIYHYGLYVEKGLVLGVHKPPAAVSMARVELTPLSLYWRVVYTPQYLISPETLRRLNG
EAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKI
KKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGIVESLILLAELFGV
FWTPPDVSAMIAPLLGEYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAAS
TLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLL
KDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAAARSLVHRAKEELS
SRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERV
VLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPL
DYVNFEACSRRIDFLVYADAPEVEKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGF
DKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTITTFNFDRNRITAFRQ
LAAENKYGLVDTMRVGNQLKGVKTMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGK
VLVEKVKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIAR
RMNIQELWSKPQLDQNESETKEEAPKSGDDEFIISSKDIKEEGKKGKNKTGRGKKHTA
FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIK
IRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDF
EAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCR
FRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMGTHATMKIQGRMVG
GQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQG
SEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRD
PRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQ
ACASLDKTTSSGHPYHVRKNEFWNGETFTGKLADQASKANLMFEEGKHMTPVYTAALK
DELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCISLPVRVGMNMNED
GPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAP
SVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSF
YGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRD
PAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYS
KISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..892
/gene="ORF1"
/product="p48"
mat_peptide 893..1990
/gene="ORF1"
/product="NTPase"
mat_peptide 1991..2521
/gene="ORF1"
/product="p22"
mat_peptide 2522..2920
/gene="ORF1"
/product="VPg"
mat_peptide 2921..3463
/gene="ORF1"
/product="Pro"
mat_peptide 3464..4993
/gene="ORF1"
/product="RdRp"
gene 4977..6605
/gene="ORF2"
CDS 4977..6605
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QZU27212.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6605..7384
/gene="ORF3"
CDS 6605..7384
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QZU27213.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTVSSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 cttaaagaaa gccctcgggg ctaggcccaa acagcctacc ccgagagaca aaccacaaaa
61 gcccccaaga ccaccaactc ccgagttggt caagaggata ccccctcctc cacctaatgg
121 cgaagaagaa gaagaaccag tcattaggta tgaggttaag agtgggatct ctggcctgcc
181 cgagctcaca acagtccccc aaccggacgt ggccaacaca gcattcagtg ttccaccact
241 gagcttgaga gaaaacaggg aggccaagga accgctaaca ggggcaatat tagagatgtg
301 ggatggagag atataccact atggcctgta cgtggagaaa ggcttagtgt tgggtgtgca
361 caaaccacct gcagccgtaa gcatggcaag agtggagctg acgccgctgt cattgtactg
421 gcgtgtggtg tacactcccc aatacctcat ctcccctgaa actctcagga gactcaacgg
481 agaggcgttc ccttacaccg cctttgacaa taactgctat gccttttgct gctgggtgtt
541 agacctcaat gactcatggc ttagcaggag gatggtgcag agaacaacgg gcttcttcag
601 accttatcaa gagtggaaca gaaaaccctt gcccaccatg gatgactcca aaattaagaa
661 ggtagcaaat atattcctat gttcattgtc cacattattc accagaccca taaaagacct
721 cataggaaaa attaaaccat taaacatact gaatatcctg gcaacgtgtg actggacttt
781 tgccggaata gtggagtctc tgatattact tgctgaactc ttcggagttt tctggacacc
841 cccagatgtg tctgctatga tcgctccctt actcggggaa tacgagttgc aggggccaga
901 agacctcgcc gttgaactcg tacctgtggt aatggggggg attggtttgg tgttgggatt
961 caccaaagag aaaattggca aaatgttgtc ctcagcagca tcaacactca gggcttgcaa
1021 agatcttggt gcctatggct tagagatact caaattggtc atgaagtggt tcttcccaaa
1081 gaaagaggag gccaatgagt tagccatggt gagggccata gaggatgctg tactagatct
1141 tgaggcaata gaaaataacc acatgacgac cctgttgaaa gacaaagaca gcttggcaac
1201 atacatgaaa acactggaca tggaggagga gaaagccagg aggttgtcca caaaatctgc
1261 atcccctgac atagttggga caatcaacgc cctgctggct cgaatagcag cggccaggtc
1321 attagtccac agggccaagg aagagctatc tagcaggata agaccagtag ttgttatgat
1381 atctggcaaa ccaggaatag gcaaaactca tctggccagg gaggtggcaa gaaaggtggc
1441 gtccaccctc acaggggatc aaagagtcgg actcatacca agaaacggtg tggaccattg
1501 ggatgcatac aaaggtgaga gagtcgtgct gtgggacgac tatggcatga gtaaccccat
1561 tcatgatgct cttcgcatac aagaattggc tgatacgtgt ccccttacct taaattgtga
1621 cagaattgaa aacaagggaa aagtttttga cagtgaggtc ataataatta caacaaacct
1681 tgccaatcca gccccacttg attatgttaa ttttgaggcc tgttccagga gaattgattt
1741 cctggtgtac gctgatgcac cagaagtaga aaaggcaaaa cgggactttc ctggtcagcc
1801 agatatgtgg aaggacgcct tcaagccgga cttttcacac atcaagctac agcttgcacc
1861 ccagggcggc tttgacaaga atggcaacac cccacatggg aagggagtga tgaagactct
1921 cactaccggt tctctgattg cccgtgcatc aggcctactg catgagagga tggatgaatt
1981 tgaactccaa ggtcccacaa tcaccacctt caatttcgac cggaatagaa tcacagcatt
2041 cagacaattg gctgcagaaa acaagtatgg attggtggat accatgagag ttggcaatca
2101 actaaaagga gtgaaaacca tggaggaact caaacaagca atcaggaatg tgaccatcaa
2161 gaggtgccgg atcatctacg gtggctccac gtatgacctt gaatctgatg gcaagggcaa
2221 agttttggtg gaaaaggtca agaacacctc tgtacagacc aacaacgagt tggctggggc
2281 cctgcaccat ctcaaacacg cccgaatcag gtactatgtc aaatgtgtgc aagaagcagt
2341 ctattccatc atacaaattg ccggcgctgc gtttgtcacc acgcgcattg cacgccgcat
2401 gaacatacaa gaactctggt cgaagccaca attagatcaa aatgaatcag agactaagga
2461 agaggccccc aagtcaggag atgacgagtt catcatatct tctaaggaca tcaaggagga
2521 aggaaagaag ggcaaaaaca aaactggccg tggcaagaaa cacactgcat tctccagcaa
2581 gggcttgagc gatgaggagt atgacgagta caagaggata agagaagaga gaaatgggaa
2641 gtactccata gaggagtatc ttcaagacag agacaggtac tatgaggagc tcgccattgc
2701 caaggccacg gaagaagact tctgtgaaga ggaggagatc aaaatccgtc agagaatttt
2761 ccgtcccacc aggaaacaaa gaaaggaaga gagggccaca ttagggctag taacaggttc
2821 agaaatcaga aaaagaaatc ctgatgactt caaacccaaa gggaagctgt gggccgatga
2881 caacaggagt gttgactaca atgagaaact ggactttgag gcccccccaa gcatatggtc
2941 taggattgtg agctttggtt ctggctgggg cttctgggtg tcaccaagcc ttttcataac
3001 gtcaactcat gtgatccccg caggcataac agaagcattt ggagtcccca tcaaacaaat
3061 tcagatccac aaatcaggtg aattttgccg attcagattc ccaaagccaa ttagaccaga
3121 tgtgacaggg atgatcttgg aagaaggtgc gcctgagggc accgtggcaa ctgtgctcat
3181 caaacgcccc accggagagc tcatgcctct tgcagccaga atgggaacac acgcaaccat
3241 gaaaattcaa ggccgcatgg ttggcggaca gatgggtatg ttgctcactg gatcaaatgc
3301 taaaggaatg gatttgggaa caactcctgg tgactgtggc tgtccttata tctataaaag
3361 gggcaatgac tatatagtca ttggggtgca cactgcagca gcccgtggtg gaaacaccgt
3421 catctgtgcc acacagggaa gtgagggtga ggcaactctt gagggtggag atgacaaagg
3481 aacatactgt ggggcaccca tcctaggccc tgggggtgca ccaaaattga gcaccaaaac
3541 caaattttgg aggtcatcga acacgcccct tccaccaggg acatatgaac ctgcctacct
3601 cggtggccgt gatccgcgtg ttaagggtgg gccctccctg cagcaggtaa tgagagacca
3661 gttgaagcca ttcactgaac ccaggggcaa acctccaaga ccaagtgtat tggaagcagc
3721 caaacaaacc atcatcaatg tcctcgaaca aaccctggac cctccacaaa aatggacata
3781 cgcacaggcg tgtgcctcac ttgacaaaac cacctccagc gggcatcctt atcacgtccg
3841 aaagaatgaa ttctggaatg gtgagacctt cactggtaaa ttggcagacc aagcatcaaa
3901 agcaaaccta atgtttgagg aagggaaaca catgacacca gtgtacacag cagcactcaa
3961 ggacgagcta gtcaagactg agaaaatcta tggaaagatc aagaagagac tgctctgggg
4021 ctctgacttg tccaccatga tccggtgcgc taggtcattt ggtgggctca tggacgagat
4081 gaaggcacac tgcatatcac tcccagtccg agttggcatg aatatgaatg aagatggccc
4141 aataatattt gagaaacatt ccagatacaa atatcactat gatgcagact actctcgttg
4201 ggattcaaca caacagaggg cagtactagc agcagccttg gaaattatgg tcagattctc
4261 tgcagaacca caattggcac aaatagtcgc tgaggatctg ctggccccta gtgtagtaga
4321 tgtaggagac tttaaaatta caataaatga agggctcccc tctggtgtgc catgcacttc
4381 tcagtggaac tccatcgcac actggctgct aactctctgt gccttgtctg aagtcaccaa
4441 actgtcccct gacattatac aggcaaattc catgttctca ttttacggtg atgacgagat
4501 tgtcagcacc gacataaaat tggaccctga acagttaacc gccaaattga aggagtacgg
4561 cctgaaacca acccgcccag acaagaccga gggacccctg attatcagtg aagatttgaa
4621 cggactcact ttcctccgga ggacagtgac tcgtgaccca gctggctggt ttggaaaact
4681 ggaccaaagc tcaattttga ggcagatgta ctggactaga ggaccaaatc atgaagaccc
4741 caatgagaca atgatacccc attctcaaag acccatacag ctcatggcac tgcttggtga
4801 agcctctctt cacggaccct ctttctacag taaaatcagt aaattggtca taactgaact
4861 caaagaaggt gggatggact tttacgtgcc aaggcaggaa cccatgttca ggtggatgag
4921 gttttctgac ttgagcacgt gggagggcga tcgcaatctg gctcccaatt ttgtgaatga
4981 agatggcgtc gaatgacgcc gctccatcta ctgatggtgc agccggcctc gtgccagaaa
5041 gtaacaatga ggtcatggct cttgaacccg tagctggtgc cgccttggca gccccggtca
5101 ctggtcaaac aaatattata gacccttgga ttagagcaaa ttttgtccag gcccccaatg
5161 gtgaatttac agtctctccc cgtaatgccc ctggtgaagt gctactgaat ctagagttgg
5221 gtccagaatt aaatccttat ctggcacatt tagcaagaat gtacaatggg tatgccggtg
5281 ggatggaggt gcaggtcatg ttggctggga acgcgttcac agccggcaag ttggtcttcg
5341 ccgccgtgcc acctcacttc ccagttgaaa accttagccc acagcaaatc accatgttcc
5401 ctcatgtgat catagatgtg agaaccttgg aacctgttct gttaccactc cctgatgtta
5461 ggaataattt cttccattat aatcagaaag atgatcctaa gatgagaatt gtggctatgc
5521 tttatacccc cctcaggtct aatggttcag gtgatgatgt gtttacagtc tcctgcagag
5581 tgttgactag accttcccct gactttgact tcacatacct ggtgccacca acagtggagt
5641 ctaaaacaaa accattcacc ctcccaatcc tcacacttgg ggaactttcc aattccaggt
5701 tcccagtgtc catagaccag atgtatacca gccctaatga agttatatca gtgcagtgtc
5761 aaaatggtag gtgcacactg gacggggagc tccaggggac aacacaactc caagtcagtg
5821 gcatttgtgc tttcaaaggt gaagtgaccg cccacttgca tgacaatgat cacctatata
5881 atgttaccat cacaaacttg aatgggtccc cttttgatcc ctccgaggat atccctgccc
5941 ctctgggtgt gcctgacttc cagggaaggg tttttggtat catctcccaa agggacaaac
6001 acaatagtcc tgggcataat gaaccagcaa acaggggaca cgacgctgtg gtccccactt
6061 acacagcaca gtacactcca aaactgggac aaattcaaat tggcacatgg cagactgacg
6121 accttacagt caaccaacca gtcaaattca ccccagttgg actcaatgac actgaacatt
6181 ttaaccaatg ggtggtcccc aggtatgctg gtgccctaaa cctcaacaca aaccttgccc
6241 cttctgttgc tccagtattt ccaggagagc gcctgctctt cttcagatca tacattcccc
6301 tcaagggcgg ttatggaaac ccagccattg attgcctact accacaagag tgggtgcaac
6361 acttctatca ggaagcagcc ccttcaatga gtgaggtggc cctcgtcaga tacatcaacc
6421 cggacactgg tcgggcactg tttgaggcca agctccacag agctggtttc atgacagtct
6481 cgagcaacac cagtgccccg gtggttgtgc ctgccaacgg atacttcaga tttgattctt
6541 gggtgaacca attctattct ctcgccccca tgggaactgg gaatgggcgt agaagggttc
6601 aataatggct ggagcttttg tagctggtct tgcaggggac gtgctcagca atgggcttag
6661 ttcattaatc aatgcaggtg ctaatgcaat aaatcagagg gcagaatttg attttaatca
6721 gaaattgcag caaaattctt ttaatcatga taaggagatg ttgcaggctc agattcaggc
6781 aactaagcag ctgcaggcag acatgatggc tataaaacaa ggggtcttga ccgctggcgg
6841 cttttcccct gctgatgcag ccagaggtgc tgtgaacgcg cccatgacac aagcgctgga
6901 ttggaatggt acaaggtatt gggcaccaaa ctccatgagg accacatctt attctggaaa
6961 gttcacatca accgccccag tgaggcaggc cgacttccag cacacccaaa gccggccttc
7021 gagtggctcc tctgtgtctt cctttgccac tcagtcttca aggccaactc tgaccacaac
7081 cactggttcc tcacatggca cagtctcatc aaattcaact cgcagcacaa gcctctccca
7141 atcaacggtc tccagagcta catctaggac tggtgagtgg gttagagatc aaaatagaaa
7201 tttggagccc tacatgcatg gtgccttaca gacagccttt gtcaccccac cttccagcag
7261 ggcatctgac gggacagtct caaccgtccc gaaaggtgtt ttggactcct ggacacctgc
7321 gtttaacacc cgcaggcagc cgctttttgc acacctccgt aagagggggg agtcacaagc
7381 ttagtgaaaa ggtgaaaatt tatttaggat gaattgat
//