Typing tool
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Typing tool
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Complete norovirus genomes
| OK012403 | GII.2 | |
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| GII.P16 |
ORF1: 1..5022
ORF2: 5003..6631
ORF3: 6631..7410
LOCUS OK012403 7486 bp RNA linear VRL 08-SEP-2021
DEFINITION Norovirus GII isolate GII/Hu/RU/2017/GII.2P16/Nizhny_Novgorod2004
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION OK012403
VERSION OK012403.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7486)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F. and Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2021) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v. 3.11.1.
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7486
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2017/GII.2P16/Nizhny_Novgorod2004"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Russia: Nizhny_Novgorod"
/collection_date="23-Aug-2017"
/note="genotype: GII.2[P16]"
gene <1..5022
/gene="ORF1"
CDS <1..5022
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QZU27208.1"
/translation="GLFTNMSSTLKKALGARPKQPTPRDKPQKPPRPPTPELVKRIPP
PPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRENREAKEPLT
GAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAVSMARVELTPLSLYWRVVYTPQYLIS
PETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQEWNRKP
LPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDWTFAGIVESL
ILLAELFGVFWTPPDVSAMIAPLLGEYELQGPEDLAVELVPVVMGGIGLVLGFTKEKI
GKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAI
ENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALLARIAAARSL
VHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVGLIPRNGVDH
WDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKVFDSEVIIIT
TNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKAKRDFPGQPDMWKDAFKPDFSHIK
LQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQGPTITTFNFD
RNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTMEELKQAIRNVTIKRCRIIYGGSTY
DLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAVYSIIQIAGA
AFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSGDDEFIISSKDIKEEGKKGKNK
TGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEE
DFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRS
VDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEAFGVPIKQIQ
IHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPLAARMGTHAT
MKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIVIGVHTAAARGG
NTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSSNTPLPPGTY
EPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTIINVLEQTLD
PPQKWTYAQACASLDKTTSSGHPYHVRKNEFWNGETFTGKLADQASKANLMFEEGKHM
TPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSFGGLMDEMKAHCISLPV
RVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQ
IVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTKLSPDI
IQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLT
FLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEA
SLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVN
EDGVE"
mat_peptide <1..918
/gene="ORF1"
/product="p48"
mat_peptide 919..2016
/gene="ORF1"
/product="NTPase"
mat_peptide 2017..2547
/gene="ORF1"
/product="p22"
mat_peptide 2548..2946
/gene="ORF1"
/product="VPg"
mat_peptide 2947..3489
/gene="ORF1"
/product="Pro"
mat_peptide 3490..5019
/gene="ORF1"
/product="RdRp"
gene 5003..6631
/gene="ORF2"
CDS 5003..6631
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QZU27209.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6631..7410
/gene="ORF3"
CDS 6631..7410
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QZU27210.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTVSSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag gcccaaacag
61 cctaccccga gagacaaacc acaaaagccc ccaagaccac caactcccga gttggtcaag
121 aggatacccc ctcctccacc taatggcgaa gaagaagaag aaccagtcat taggtatgag
181 gttaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc ggacgtggcc
241 aacacagcat tcagtgttcc accactgagc ttgagagaaa acagggaggc caaggaaccg
301 ctaacagggg caatattaga gatgtgggat ggagagatat accactatgg cctgtacgtg
361 gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccgtaagcat ggcaagagtg
421 gagctgacgc cgctgtcatt gtactggcgt gtggtgtaca ctccccaata cctcatctcc
481 cctgaaactc tcaggagact caacggagag gcgttccctt acaccgcctt tgacaataac
541 tgctatgcct tttgctgctg ggtgttagac ctcaatgact catggcttag caggaggatg
601 gtgcagagaa caacgggctt cttcagacct tatcaagagt ggaacagaaa acccttgccc
661 accatggatg actccaaaat taagaaggta gcaaatatat tcctatgttc attgtccaca
721 ttattcacca gacccataaa agacctcata ggaaaaatta aaccattaaa catactgaat
781 atcctggcaa cgtgtgactg gacttttgcc ggaatagtgg agtctctgat attacttgct
841 gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc tcccttactc
901 ggggaatacg agttgcaggg gccagaagac ctcgccgttg aactcgtacc tgtggtaatg
961 ggggggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat gttgtcctca
1021 gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttaga gatactcaaa
1081 ttggtcatga agtggttctt cccaaagaaa gaggaggcca atgagttagc catggtgagg
1141 gccatagagg atgctgtact agatcttgag gcaatagaaa ataaccacat gacgaccctg
1201 ttgaaagaca aagacagctt ggcaacatac atgaaaacac tggacatgga ggaggagaaa
1261 gccaggaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat caacgccctg
1321 ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaggaaga gctatctagc
1381 aggataagac cagtagttgt tatgatatct ggcaaaccag gaataggcaa aactcatctg
1441 gccagggagg tggcaagaaa ggtggcgtcc accctcacag gggatcaaag agtcggactc
1501 ataccaagaa acggtgtgga ccattgggat gcatacaaag gtgagagagt cgtgctgtgg
1561 gacgactatg gcatgagtaa ccccattcat gatgctcttc gcatacaaga attggctgat
1621 acgtgtcccc ttaccttaaa ttgtgacaga attgaaaaca agggaaaagt ttttgacagt
1681 gaggtcataa taattacaac aaaccttgcc aatccagccc cacttgatta tgttaatttt
1741 gaggcctgtt ccaggagaat tgatttcctg gtgtacgctg atgcaccaga agtagaaaag
1801 gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa gccggacttt
1861 tcacacatca agctacagct tgcaccccag ggcggctttg acaagaatgg caacacccca
1921 catgggaagg gagtgatgaa gactctcact accggttctc tgattgcccg tgcatcaggc
1981 ctactgcatg agaggatgga tgaatttgaa ctccaaggtc ccacaatcac caccttcaat
2041 ttcgaccgga atagaatcac agcattcaga caattggctg cagaaaacaa gtatggattg
2101 gtggatacca tgagagttgg caatcaacta aaaggagtga aaaccatgga ggaactcaaa
2161 caagcaatca ggaatgtgac catcaagagg tgccggatca tctacggtgg ctccacgtat
2221 gaccttgaat ctgatggcaa gggcaaagtt ttggtggaaa aggtcaagaa cacctctgta
2281 cagaccaaca acgagttggc tggggccctg caccatctca aacacgcccg aatcaggtac
2341 tatgtcaaat gtgtgcaaga agcagtctat tccatcatac aaattgccgg cgctgcgttt
2401 gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tctggtcgaa gccacaatta
2461 gatcaaaatg aatcagagac taaggaagag gcccccaagt caggagatga cgagttcatc
2521 atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac tggccgtggc
2581 aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga cgagtacaag
2641 aggataagag aagagagaaa tgggaagtac tccatagagg agtatcttca agacagagac
2701 aggtactatg aggagctcgc cattgccaag gccacggaag aagacttctg tgaagaggag
2761 gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaaagaaa ggaagagagg
2821 gccacattag ggctagtaac aggttcagaa atcagaaaaa gaaatcctga tgacttcaaa
2881 cccaaaggga agctgtgggc cgatgacaac aggagtgttg actacaatga gaaactggac
2941 tttgaggccc ccccaagcat atggtctagg attgtgagct ttggttctgg ctggggcttc
3001 tgggtgtcac caagcctttt cataacgtca actcatgtga tccccgcagg cataacagaa
3061 gcatttggag tccccatcaa acaaattcag atccacaaat caggtgaatt ttgccgattc
3121 agattcccaa agccaattag accagatgtg acagggatga tcttggaaga aggtgcgcct
3181 gagggcaccg tggcaactgt gctcatcaaa cgccccaccg gagagctcat gcctcttgca
3241 gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg cggacagatg
3301 ggtatgttgc tcactggatc aaatgctaaa ggaatggatt tgggaacaac tcctggtgac
3361 tgtggctgtc cttatatcta taaaaggggc aatgactata tagtcattgg ggtgcacact
3421 gcagcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagtga gggtgaggca
3481 actcttgagg gtggagatga caaaggaaca tactgtgggg cacccatcct aggccctggg
3541 ggtgcaccaa aattgagcac caaaaccaaa ttttggaggt catcgaacac gccccttcca
3601 ccagggacat atgaacctgc ctacctcggt ggccgtgatc cgcgtgttaa gggtgggccc
3661 tccctgcagc aggtaatgag agaccagttg aagccattca ctgaacccag gggcaaacct
3721 ccaagaccaa gtgtattgga agcagccaaa caaaccatca tcaatgtcct cgaacaaacc
3781 ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga caaaaccacc
3841 tccagcgggc atccttatca cgtccgaaag aatgaattct ggaatggtga gaccttcact
3901 ggtaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg gaaacacatg
3961 acaccagtgt acacagcagc actcaaggac gagctagtca agactgagaa aatctatgga
4021 aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg gtgcgctagg
4081 tcatttggtg ggctcatgga cgagatgaag gcacactgca tatcactccc agtccgagtt
4141 ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag atacaaatat
4201 cactatgatg cagactactc tcgttgggat tcaacacaac agagggcagt actagcagca
4261 gccttggaaa ttatggtcag attctctgca gaaccacaat tggcacaaat agtcgctgag
4321 gatctgctgg cccctagtgt agtagatgta ggagacttta aaattacaat aaatgaaggg
4381 ctcccctctg gtgtgccatg cacttctcag tggaactcca tcgcacactg gctgctaact
4441 ctctgtgcct tgtctgaagt caccaaactg tcccctgaca ttatacaggc aaattccatg
4501 ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaattgga ccctgaacag
4561 ttaaccgcca aattgaagga gtacggcctg aaaccaaccc gcccagacaa gaccgaggga
4621 cccctgatta tcagtgaaga tttgaacgga ctcactttcc tccggaggac agtgactcgt
4681 gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca gatgtactgg
4741 actagaggac caaatcatga agaccccaat gagacaatga taccccattc tcaaagaccc
4801 atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt ctacagtaaa
4861 atcagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta cgtgccaagg
4921 caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga gggcgatcgc
4981 aatctggctc ccaattttgt gaatgaagat ggcgtcgaat gacgccgctc catctactga
5041 tggtgcagcc ggcctcgtgc cagaaagtaa caatgaggtc atggctcttg aacccgtagc
5101 tggtgccgcc ttggcagccc cggtcactgg tcaaacaaat attatagacc cttggattag
5161 agcaaatttt gtccaggccc ccaatggtga atttacagtc tctccccgta atgcccctgg
5221 tgaagtgcta ctgaatctag agttgggtcc agaattaaat ccttatctgg cacatttagc
5281 aagaatgtac aatgggtatg ccggtgggat ggaggtgcag gtcatgttgg ctgggaacgc
5341 gttcacagcc ggcaagttgg tcttcgccgc cgtgccacct cacttcccag ttgaaaacct
5401 tagcccacag caaatcacca tgttccctca tgtgatcata gatgtgagaa ccttggaacc
5461 tgttctgtta ccactccctg atgttaggaa taatttcttc cattataatc agaaagatga
5521 tcctaagatg agaattgtgg ctatgcttta tacccccctc aggtctaatg gttcaggtga
5581 tgatgtgttt acagtctcct gcagagtgtt gactagacct tcccctgact ttgacttcac
5641 atacctggtg ccaccaacag tggagtctaa aacaaaacca ttcaccctcc caatcctcac
5701 acttggggaa ctttccaatt ccaggttccc agtgtccata gaccagatgt ataccagccc
5761 taatgaagtt atatcagtgc agtgtcaaaa tggtaggtgc acactggacg gggagctcca
5821 ggggacaaca caactccaag tcagtggcat ttgtgctttc aaaggtgaag tgaccgccca
5881 cttgcatgac aatgatcacc tatataatgt taccatcaca aacttgaatg ggtccccttt
5941 tgatccctcc gaggatatcc ctgcccctct gggtgtgcct gacttccagg gaagggtttt
6001 tggtatcatc tcccaaaggg acaaacacaa tagtcctggg cataatgaac cagcaaacag
6061 gggacacgac gctgtggtcc ccacttacac agcacagtac actccaaaac tgggacaaat
6121 tcaaattggc acatggcaga ctgacgacct tacagtcaac caaccagtca aattcacccc
6181 agttggactc aatgacactg aacattttaa ccaatgggtg gtccccaggt atgctggtgc
6241 cctaaacctc aacacaaacc ttgccccttc tgttgctcca gtatttccag gagagcgcct
6301 gctcttcttc agatcataca ttcccctcaa gggcggttat ggaaacccag ccattgattg
6361 cctactacca caagagtggg tgcaacactt ctatcaggaa gcagcccctt caatgagtga
6421 ggtggccctc gtcagataca tcaacccgga cactggtcgg gcactgtttg aggccaagct
6481 ccacagagct ggtttcatga cagtctcgag caacaccagt gccccggtgg ttgtgcctgc
6541 caacggatac ttcagatttg attcttgggt gaaccaattc tattctctcg cccccatggg
6601 aactgggaat gggcgtagaa gggttcaata atggctggag cttttgtagc tggtcttgca
6661 ggggacgtgc tcagcaatgg gcttagttca ttaatcaatg caggtgctaa tgcaataaat
6721 cagagggcag aatttgattt taatcagaaa ttgcagcaaa attcttttaa tcatgataag
6781 gagatgttgc aggctcagat tcaggcaact aagcagctgc aggcagacat gatggctata
6841 aaacaagggg tcttgaccgc tggcggcttt tcccctgctg atgcagccag aggtgctgtg
6901 aacgcgccca tgacacaagc gctggattgg aatggtacaa ggtattgggc accaaactcc
6961 atgaggacca catcttattc tggaaagttc acatcaaccg ccccagtgag gcaggccgac
7021 ttccagcaca cccaaagccg gccttcgagt ggctcctctg tgtcttcctt tgccactcag
7081 tcttcaaggc caactctgac cacaaccact ggttcctcac atggcacagt ctcatcaaat
7141 tcaactcgca gcacaagcct ctcccaatca acggtctcca gagctacatc taggactggt
7201 gagtgggtta gagatcaaaa tagaaatttg gagccctaca tgcatggtgc cttacagaca
7261 gcctttgtca ccccaccttc cagcagggca tctgacggga cagtctcaac cgtcccgaaa
7321 ggtgttttgg actcctggac acctgcgttt aacacccgca ggcagccgct ttttgcacac
7381 ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg aaaatttatt taggatgaat
7441 tgattttacc ttttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//