Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| NC_044932 | GII.NA2 | |
|
|---|---|---|---|
| GII.PNA2 |
ORF1: 5..5095
ORF2: 5076..6704
ORF3: 6704..7468
LOCUS NC_044932 7525 bp RNA linear VRL 27-SEP-2019
DEFINITION Norovirus GII GII.NA2[PNA2], complete sequence.
ACCESSION NC_044932
VERSION NC_044932.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7525)
AUTHORS Tohma,K., Saito,M., Mayta,H., Zimic,M., Lepore,C.J.,
Ford-Siltz,L.A., Gilman,R.H. and Parra,G.I.
TITLE Complete Genome Sequence of a Nontypeable GII Norovirus Detected in
Peru
JOURNAL Genome Announc 6 (10), e00095-18 (2018)
PUBMED 29519825
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7525)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7525)
AUTHORS Tohma,K., Saito,M., Lepore,C.J., Ford-Siltz,L.A., Gilman,R.H. and
Parra,G.I.
TITLE Direct Submission
JOURNAL Submitted (18-DEC-2017) CBER/OVRR/DVP/LHV, U.S. Food and Drug
Administration, 10903 New Hampshire Avenue, Silver Spring, MD
20993, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence is identical to MG706448.
##Assembly-Data-START##
Assembly Method :: High-performance Integrated Virtual
Environment (HIVE) v. July 2017
Sequencing Technology :: Illumina; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.PNA4-GII.NA4/PNV06929/2008/PER"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Peru"
/collection_date="27-May-2008"
/genotype="GII.NA2[PNA2]"
5'UTR 1..4
gene 5..5095
/gene="ORF1"
/locus_tag="F7X33_gp1"
/db_xref="GeneID:41871946"
CDS 5..5095
/gene="ORF1"
/locus_tag="F7X33_gp1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YP_009701445.1"
/db_xref="GeneID:41871946"
/translation="MKMASNDAATATAGTTSSNSEIHNKDVSNTQNIFANMTVGIKRA
LGARPKQPPPKPPSTKKEDKTTLPPIPPPPPNGEDIVITYNKQDDKVSGVPIVSTVET
SPLHDTAYSVPPLDQREKVDAKEPLTGSILEMWDGEIYHYGLYVEKGLVLGVHKPPSA
LSLARIELTPLSLYWRTVYTPPYLVAPDTLKKLHGESFPYTAFDNNCYTFCCWVLDLN
DSWLNRKCVSRTTGFYRPYQDWNRKPLPTMDESKLKKVANVFLCGLSSLFTRPIKDLV
GRLKPLNILNIVTNCDWTFPGVVEALILLAELFGIFWTPPDISAFVASLLGDYEMQGP
EDIATEIVPVVLGGIGMVLGFTKERIGRLLSSAASSLRACKEIGNYGIEVVKLVMKWF
FPTKNEVNEMEMVRAIEDAVLDFEAIENNHMTALLKDKNSLATFLRALDMEEEKARKL
STKSASPDIIGTINALLARLAAARSLVHRAKEEMSSRMRPVVIMISGRPGIGKTHLAR
DLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVSDALRLQELAD
TCPLTLNCDRIENKGKVFDSDTIIITTNLSNPAPLDYVNFEACSRRIDFLVYADSPAV
DKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTHSLIA
RATGLLHERLDEFDLQGPELPIYNFDQNKVASFRKLAADNKYGLMETIKAGNKLKEVK
TLDQFKEAVRDIRIKPCRIIYNSTAYDLESNGSGKVTVKKVGDQKVQANNELYSALNN
LRRARIRYYVKCFQEMIYSLLQIAGAAFVTSRMTQRMNVGKLWTKPERTMKAPTEPPA
PPIDDWTINPVDTIPEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERQGRYS
IEEYLQDRDRYYEELAIAKATEENFCEEEEVKIRQRIFRPTKKQRREERATLGLVTGS
EIRKRNPDDFKPKGKLWADDDRSVNYNERIDFEAPPSLWSRIVNFGSGWGFWVSSNLF
ITSTHVVPPGMTEAFGVPTSQIQIHRSGEFCKMRFPKAIRPDVSGMILEEGAPEGTVV
TILIKRTTGELMPLAARMGTHATMKIQGRMIGGQMGMLLTGSNAKNMDLGTVPGDCGC
PYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGDNHGTYCGAPIMGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTAPRGK
PPRPAVLEAAKETICSVLEQTIEPPQKWSYAQACASLDKTTSSGYPHHKKKNDNWNGE
SFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYETIKKRLLWGSDLGTM
IRCARSFGGLMDEMKANCVRLPIRVGMNMNEDGPIIFEKHAKYRYHYDADYSRWDSTQ
QRHILGVALDIMVKFSAEPELSQVVSEDLLSPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCAMSEVSGLSPDVVQSNSCFSFYGDDEIVSTDIKLDPQKLTDKLREYG
LIPTRPDKTEGPLIIRESLEGLTFLRRDICRDPVGWYGKLDQSSIMRQLYWTKGPNHE
DPNETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKLVITELKEGGMDFYVPRQEPMY
RWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1000
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="p48"
/protein_id="YP_009701448.1"
mat_peptide 1001..2098
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="NTPase"
/protein_id="YP_009701449.1"
mat_peptide 2099..2635
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="p22"
/protein_id="YP_009701450.1"
mat_peptide 2636..3019
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="VPg"
/protein_id="YP_009701451.1"
mat_peptide 3020..3562
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="Pro"
/protein_id="YP_009701452.1"
mat_peptide 3563..5092
/gene="ORF1"
/locus_tag="F7X33_gp1"
/product="RdRp"
/protein_id="YP_009701453.1"
gene 5076..6704
/gene="ORF2"
/locus_tag="F7X33_gp2"
/db_xref="GeneID:41871944"
CDS 5076..6704
/gene="ORF2"
/locus_tag="F7X33_gp2"
/codon_start=1
/product="VP1"
/protein_id="YP_009701446.1"
/db_xref="GeneID:41871944"
/translation="MKMASNDAAPSNDGAANLVPEANSEALALEPVAGGAIAAPLTGQ
TNIIDPWIMKNFVQAPNGEFTISPRNSPGEILLNLELGPEINPFLAHLSRMYNGFAGG
VEVQVLMAGNAFTAGKVIFAAVPPHFPVENISPPQITMFPHIIVDVRTLEPIFIPVPD
VRNNFFHYNQMNDPKMRLIAMLYTPLRSNGSSDDVFTVSCRVLTRPTPDFEFNYLVPP
TVESRTKPFSVPILTIGEMTNSRFPLPIDMLYTSPTDSLVVQPQNGRCTIEGELQGTT
QLVTPNICSLRGAITGHEGNDDNHKWHMTVTSPNGAAFDPTEDVPAPLGTPDFIADIY
GVLSQRNRSIESGQSGPANRSHEAVVSTRSPKFTPKLGSVMIATWNTNDIELEPTKFT
PIGLENPGPFQQWRLPNYSGALTLNMGLASSVFPTYPGEQILFFRSYIPLKGGFGNTA
IDCLVPQEWVQHFYQESAPAQSDVALLRYVNPETGRVLFEAKLHRQGFLTVARSGESP
INVPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 6704..7468
/gene="ORF3"
/locus_tag="F7X33_gp3"
/db_xref="GeneID:41871945"
CDS 6704..7468
/gene="ORF3"
/locus_tag="F7X33_gp3"
/codon_start=1
/product="VP2"
/protein_id="YP_009701447.1"
/db_xref="GeneID:41871945"
/translation="MAGAFLAGLAGDIVTNSVGSLVNAGASAINQKIDFENNKYLQGE
SFKHDKEMLNAQIEATKKLQMDMINIKQGVLSAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNAPVTTSLSGGFTGQAVHRPTPNFGSNQIPKTMSSRGTSVRSNSTQLTSLGS
QSSGSSRSSVTTVSSSLPSTNRTREWVNQQNLNLEPHLPGSLRTAFVTPPSSTASSSG
TVSTVPKGVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 7469..7525
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctgc cactgcgacc gctggcacaa ccagctcaaa
61 cagtgaaatt cacaacaaag atgttagtaa cacacaaaac atctttgcca acatgactgt
121 tggcataaag agggctctgg gggcgaggcc aaaacaacct ccccccaagc ccccttccac
181 aaagaaggag gacaaaacca cccttcctcc aatacccccc ccacccccca atggtgagga
241 cattgtcatc acgtacaaca agcaagatga caaggtcagt ggagttccca tcgtttccac
301 tgttgagaca tcccctctgc atgacaccgc atacagtgtc cctcccctgg atcaaaggga
361 aaaggttgat gcaaaggagc ccctaacagg ttcaatactc gagatgtggg atggtgagat
421 ctaccactac ggcctctatg tggagaaggg tttggtcctc ggcgtgcaca agccaccatc
481 cgccttgagc ctggcacgca tagagttaac ccccctctct ctctactgga ggacagtcta
541 tacaccaccc tacctagtgg ctccagacac cctcaagaaa ctccacgggg aatcattccc
601 ctacacggct tttgacaaca actgctacac cttttgctgt tgggtcttag acctaaacga
661 ctcatggctt aataggaaat gtgtatcaag gactactggc ttctacagac cctaccagga
721 ttggaataga aaacccctac caaccatgga tgagagtaaa ctcaaaaagg tggccaatgt
781 gtttctgtgt ggtctatcca gcttattcac caggcctatt aaggacctcg taggtagact
841 caaaccattg aacatcctca acattgtcac caactgtgat tggactttcc ccggtgttgt
901 agaagctctc atcctactgg cagaactctt tggcattttc tggaccccac cggacatatc
961 cgctttcgta gcctccctgt tgggcgacta cgagatgcaa gggcctgagg acattgcaac
1021 cgagatcgtg ccagttgttc tcggtggtat tggcatggtc cttggtttca ccaaagagag
1081 gattggccga ctactgagtt cagctgcatc atcactcagg gcatgcaagg agattggcaa
1141 ctacgggata gaggtggtca aattggtgat gaaatggttc tttcccacca aaaatgaagt
1201 gaatgaaatg gagatggtta gggcgataga agatgcggta cttgacttcg aggcaataga
1261 aaacaaccat atgacagccc tgctcaaaga caagaacagc ctagccactt tcctcagagc
1321 actagacatg gaggaggaga aagcgcggaa attgtcaacc aaatccgcgt caccagacat
1381 aatcggtacc ataaacgccc ttctagccag gctcgccgcc gctagatccc tagtccacag
1441 ggccaaggaa gagatgtcat ccaggatgcg tcctgttgtc attatgattt ctggccgacc
1501 cggaataggg aagacacacc ttgcacgcga cctggctaag aagatggcag caaccctctc
1561 aggtgaccag agagtgggcc ttgtaccaag aaacggtgtc gatcactggg atgcatacaa
1621 aggagagaga atcgtgctct gggatgatta tggcatgagc aaccccgtgt ctgatgccct
1681 acggctccaa gaacttgccg acacatgccc cctaacactt aattgtgaca ggatagagaa
1741 caaagggaaa gtctttgata gtgataccat aatcataaca accaatctgt caaacccagc
1801 tccacttgat tatgtaaact ttgaagcttg ctcccgccgc attgacttcc tcgtctatgc
1861 ggattcccct gcagttgaca aagcaaagag ggatttccct ggtcaaccag acatgtggaa
1921 ggatgcattc aaatcagact tctcccacat aaaattacaa ttggcaccac aaggaggttt
1981 cgacaaaaat ggcaacaccc cacatggtaa aggagtcatg aagaccctaa ccacacactc
2041 tctcatagcc agggctactg gtttgttgca tgagagactg gatgaatttg atctacaagg
2101 tccagaattg cccatataca attttgacca gaacaaggtg gcttccttta ggaagctggc
2161 tgcagacaac aagtatggtc tcatggaaac cataaaagca ggtaacaagt tgaaggaagt
2221 caagacactg gatcaattca aagaggccgt gagggacata cgcataaagc cttgcagaat
2281 aatctacaat tccacagctt atgacctgga gtctaacggc tcagggaagg tcactgtcaa
2341 gaaagtagga gaccaaaaag tccaagccaa caatgagctc tactctgccc tcaacaacct
2401 gcgtagagcc aggattagat actatgtcaa gtgtttccaa gaaatgatct actcactcct
2461 ccaaatagcc ggtgcggctt ttgtcacatc gagaatgaca caaaggatga atgttggcaa
2521 gctgtggacc aagccggaga gaactatgaa ggcccccacg gagccccctg ctcctccaat
2581 tgatgattgg accataaacc cagttgacac aattccggaa ggtaagaaag gcaagaacaa
2641 aagtggtaga gggaagaaac acactgcctt ctccagcaaa ggtctcagtg atgaggagta
2701 cgatgaatac aagaggatca gagaggaacg tcaaggaagg tactccatag aagaatactt
2761 gcaggacaga gaccgctatt atgaagaatt ggctatagcc aaagcaacag aggaaaattt
2821 ctgtgaagag gaagaagtca aaataaggca aaggatcttc aggccaacca agaaacaacg
2881 cagggaagaa agagccaccc tgggactggt cacaggcagt gaaatcagga aaaggaaccc
2941 agatgacttc aaaccaaagg gaaagctgtg ggctgatgat gaccgtagcg ttaactacaa
3001 tgaaaggata gattttgaag ccccccctag tctatggtct agaatagtta attttggttc
3061 aggttggggt ttctgggtct cttccaacct cttcatcacc tccacacatg ttgttccacc
3121 aggcatgacg gaggcttttg gagtcccaac aagccaaatc caaattcaca ggagtgggga
3181 attttgcaag atgagattcc ccaaagccat cagacctgat gtctctggaa tgattcttga
3241 ggaaggcgca cccgaaggga cggtggtgac catactgatc aagagaacca ctggagagct
3301 catgccactg gcagcccgta tgggcaccca tgccaccatg aagatacagg ggaggatgat
3361 tgggggccaa atggggatgc ttctcacagg gtccaatgcc aaaaatatgg accttggtac
3421 cgtccccgga gattgtggct gtccttatgt ctacaaaagg ggtaatgatt gggttgtcat
3481 tggggtgcac accgccgctg caaggggtgg caacacggtg atatgtgcaa ctcagggacc
3541 agatggagaa gccacacttg agggaggaga caatcacggt acttactgtg gcgcaccaat
3601 catgggacca ggaaatgccc caaaactcag caccaaaacc aaattctgga gatcttccaa
3661 tgccccactt ccccctggca catatgaacc tgcctatctt ggtggtagag accccagggt
3721 taaaggtggc ccatcactac aacaagtcat gagagaccaa ctcaaaccct tcaccgctcc
3781 ccgtgggaag ccgccaaggc cggcagttct agaggccgct aaggagacca tctgtagcgt
3841 acttgagcaa accatagaac caccccaaaa gtggtcctat gcgcaagcct gtgcttccct
3901 ggacaagaca acatcaagtg gctaccccca ccacaagaag aagaatgata actggaatgg
3961 agagtctttc actggcgtcc tggctgacca ggcatcaaaa gcaaatctca tgtttgagca
4021 agggaaacac atgcagcctg tgtatacagc tgcacttaag gatgaacttg tcaagaccag
4081 taagatctat gaaaccatca agaaaaggct cttgtggggt tctgacctgg gcacgatgat
4141 tcgttgtgca agatcatttg ggggtctcat ggatgagatg aaggctaact gtgtgagatt
4201 gcccatcagg gtcgggatga acatgaatga agatggacct ataatctttg agaaacatgc
4261 aaaatataga tatcattatg atgctgatta ttccaggtgg gactcaaccc aacagagaca
4321 catactgggt gttgcacttg acatcatggt taaattctca gctgaaccag aactatcaca
4381 agtggtgtct gaggatcttc tgtcacccag tgtcgtggat gttggtgact ttaagatcac
4441 aataaacgag ggccttccct caggtgtccc atgcacatct caatggaact caattgctca
4501 ttggcttcta acactgtgtg ccatgtcgga agtctctgga ctctcccccg acgtggtaca
4561 atcaaattca tgtttctcct tctatgggga tgatgagata gtcagcacag acataaagtt
4621 ggacccacaa aaactgacag acaaactgag agagtatggg ctcattccaa cccgacctga
4681 taaaacagag gggccactca taattagaga gagcttagag ggtctgacgt tcctcaggag
4741 agatatatgt agggacccag tcggctggta tggtaagctt gaccagtcct caatcatgag
4801 acaactgtat tggaccaaag gacccaacca tgaggatccc aatgaaacaa tgattccaca
4861 ttctcaaaga ccaatacaat taatgtccct tctcggtgag gctgccctgc atggaccaac
4921 attttacaag aaagttagca aattggtaat cactgaactc aaagaaggtg gaatggattt
4981 ttacgtgccc agacaagaac caatgtacag gtggatgaga ttctccgact tgagcacgtg
5041 ggagggtgat cgcaatcttg ctcccgaagg tgtgaatgaa gatggcgtcg aatgacgccg
5101 ctccatctaa tgatggtgct gccaacctcg ttccagaggc caactcagag gcattggcat
5161 tggaaccggt ggcaggtggg gctattgccg cacctctcac tggtcaaaca aatataattg
5221 acccctggat tatgaaaaac tttgtgcagg cacctaatgg tgaattcaca atatccccaa
5281 gaaattcccc tggagaaatt ttgttaaacc ttgagttagg accagaaatt aatccttttc
5341 ttgcccactt atctaggatg tataatgggt ttgctggggg agtggaggta caggtgctca
5401 tggctggcaa tgcattcact gcaggaaagg tcatatttgc ggctgtgccg cctcatttcc
5461 cagtagaaaa cattagtccc ccacagataa ctatgttccc ccacataata gttgatgtta
5521 ggactcttga accaattttt atccctgtcc cagatgtgag aaataatttc tttcattaca
5581 atcaaatgaa tgatccaaag atgaggttaa ttgctatgct gtacaccccc ttaagatcaa
5641 atggttcttc tgatgatgtt ttcactgtgt cttgtagagt tctcaccaga cccacccctg
5701 attttgagtt caattatttg gtaccaccca ctgtcgagtc aaggacaaaa cccttcagtg
5761 tgcccatcct aacaattgga gagatgacaa attctaggtt cccattacct attgacatgc
5821 tgtacaccag cccgactgac agtttggtcg tccaacctca aaatggcagg tgcacaattg
5881 aaggtgaatt gcaaggtaca actcaattgg tgactccaaa catttgttcc cttcgaggcg
5941 caatcaccgg gcatgaaggc aatgatgaca accacaaatg gcacatgaca gtcacgagcc
6001 ctaatggtgc cgcctttgac ccaacagagg atgtgcctgc ccccctgggc actccagatt
6061 tcatagctga catatatggg gttctctccc agagaaatag atccatcgaa tctggccaga
6121 gtggtcctgc aaatagatct catgaggctg ttgtctccac acggagtcct aaatttaccc
6181 ctaaattagg ttcagtaatg attgccactt ggaacaccaa tgatattgaa cttgagccca
6241 ccaaattcac acctataggt cttgagaatc ccggcccctt tcaacaatgg cggctaccaa
6301 attactcagg agccctaaca ctcaacatgg gacttgcatc atctgtattc ccaacatacc
6361 ctggtgaaca aattcttttc ttccgttcat acattcccct caaaggtggc tttggaaaca
6421 cagccataga ttgccttgta ccacaggaat gggtccagca cttctatcag gaatcagccc
6481 ctgcacaatc agatgtggca ctacttaggt atgtgaaccc tgagacagga cgtgtcctgt
6541 ttgaggccaa actgcacaga caaggtttcc ttacagttgc tagatcaggt gaaagtccca
6601 tcaatgttcc tgccaacggt tatttcagat ttgactcttg ggttaaccaa ttctactctc
6661 ttgcccccat gggaactggg aacgggcgca gaaggtttca gtaatggcag gagctttctt
6721 agcaggattg gctggtgaca tagtcacaaa tagtgtaggt tctttagtta atgcaggagc
6781 tagtgcaatc aaccagaaaa ttgattttga aaataataaa taccttcaag gagaatcttt
6841 taaacatgat aaagaaatgc tgaatgcaca aattgaggct acaaagaaat tgcagatgga
6901 tatgataaac atcaaacaag gagttctttc agctgggggg ttctcaccca ctgatgcggc
6961 tcgtggagcc atcaacgctc ctatgacaaa ggttctggat tggaatggga ctagatactg
7021 ggcacccaat gctcctgtaa caacatcact gtctggtggc ttcactgggc aggccgtaca
7081 caggcccaca ccaaattttg gcagcaatca aatcccaaag acaatgtcca gtaggggaac
7141 atctgtgaga tcaaattcaa ctcaattgac cagtctgggt tcccaatctt ctggttcctc
7201 ccgaagcagt gtgactaccg tgagtagctc attgccttca accaacagga ctagagagtg
7261 ggtgaaccaa caaaatctca atttggaacc tcacctacct ggatcactga ggacagcctt
7321 tgtcactcca ccatcgagca ccgcttccag ctcaggcaca gtctcaaccg tgcccaaagg
7381 tgttttggac tcctggacat ctgcattcaa cacacgcaga cagccgctgt ttgcacacct
7441 tcgtagaagg ggggagtcaa atgtttagtg aaaagattat ttaattagaa ctaatttcaa
7501 tttggactaa ttcggaaaat ctttt
//