Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| NC_044855 | GIV.NA1 | |
|
|---|---|---|---|
| GIV.PNA1 |
ORF1: 4..5061
ORF2: 5042..6706
ORF3: 6706..7419
LOCUS NC_044855 7419 bp RNA linear VRL 15-OCT-2019
DEFINITION Norovirus GIV strain Hu/US/2016/GIV.NA1[PNA1]/WI7002, complete
genome.
ACCESSION NC_044855
VERSION NC_044855.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Norovirus GIV
ORGANISM Norovirus GIV
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7419)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 7419)
AUTHORS Collins,N., Aswath,K., Barclay,L. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2016) NCIRD/DVD/GRVLB, CDC, 1600 Clifton Rd NE,
Atlanta, GA 30329, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence is identical to KX907728.
##Assembly-Data-START##
Assembly Method :: Geneious v. 8
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7419
/organism="Norovirus GIV"
/mol_type="genomic RNA"
/strain="Hu/US/2016/GIV.NA1[PNA1]/WI7002"
/host="Homo sapiens"
/db_xref="taxon:262897"
/country="USA"
/collection_date="11-May-2016"
/genotype="GIV.NA1[PNA1]"
/note="Genotype was updated by PMID: 31483239"
5'UTR 1..3
gene 4..5061
/gene="ORF1"
/locus_tag="F7P59_gp1"
/db_xref="GeneID:41854845"
CDS 4..5061
/gene="ORF1"
/locus_tag="F7P59_gp1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YP_009700099.1"
/db_xref="GeneID:41854845"
/translation="MKMASNDASVASSSTTTATNNDKTPTNTGGVFSNLRVGIKKALN
SKQGPLELRDGSNTRPPDIQHSEGQVRFNAKDETVQGIPDLTTAPIPTIRQAKCVPPM
SEREVRVAQEPQTGSLLEMYDGSFYHYAIYIENGLVAGINRPSKALTTATVDVEPIGL
WWRVVYTPPFSVSTSALYHLQGEKFPYNAFDNNCYNFCCQVLELDDCWMRRRYVQRTS
GFFDPYQSWNPKPSQYTADSKLERVGDALLTALGALFSKPIKNIVGKLKPLNFLNLLS
ACDWTFAGIVETAILIAELFDIYWDPPDVTNFLMPLLDDFELQGPEDVAAEIVPIILG
GIGMVVGFTAEKAGRLLSSAAATLRATKELGNYGLEIVKLIMKWFFPKKESDMNSMVR
NIEDAVLDLESVENNHITHLLKDKENMAIFLRTLDLEEEKARKLSTKAASPDIVSSVN
ALLARIAAVRSLAFKAKEEMCARQRPVVVMISGRPGIGKTHYARDLASRISKLLTTDG
RVGLVPRNGVDHWDAYRGEPVVVWDDYGMGNIVKDAMMLQELADTCPVTLNCDRIENK
GKMFESDVIVLTTNSPNPTPMDYVNMEAVARRVDFLVYADSPEIEKAKRDFPGDPKAW
KPHFKDDHSHLNLLLAPQGGFDRNGNTPHGKGQVKNITPNGLVARAVALAVERRDDFQ
LQGGEPQTYNFDSSQVAAFRKLAADNKYGLAETLRVGNKLRSVTTIEGFKKAVGDVKF
KKCRIIWKGVTYDLESDGKGSVKIDRVQSQMVQTTGEIHQAVLRLRQARVRYYVMTAQ
NVVYGLLQAAGAAFVLNRIFRRAENPFSRMIKVEGEDDDPHAAPPVPTTPKVEIVQAD
IEEEGKKKGKNKQGRGRKHTAFSSKGLSDEEYEEFKQIREERGGKYSIQEYLEDRDRF
EEEVAYAQACGGDCDDIEIGRIRNSIFRPSRKQRKEERVKLGLVTGTEIRKRKPDDFQ
PKGKLWADDDRTVDYHEKLDFEAPASIWARVVQLGTGWGFWVSPNLLITSTHVIPKGV
EELFGVPIQQVQVHKCGEFTRLRFPKMIRPDVSGMILEDGAPEGVVCSILVKRPTGEC
LPLAVRMGTQATMKIQGKVVSGQLGMLLTGSNAKNMDLGTTPGDCGCPYVYKRGNDYI
VVGVHTAAGRGGNTVICAVQTSDGEAVLEGNSDNGTYCGAPIVSKGRAPQLSTKTKFW
RSSVEPLPPGTYEPAYLGGRDPRVNDGPSLYQVMRDQLKHFTAPRGRPVKPHLLQAAV
KTIENTLEQTIDPPQPWSYSQACQSLDKSTSSGWPHHVQKNTHWNGESFTGPLADQAS
RANLMYEQAKSMTPQYTAALKDELVKPEKVYSKVKKRLLWGADLGTMVRCARAFGPFT
DAIKKCCVSLPIKVGLNINEEGPIVFEKHSQYEFHYDADYSRWDSTQQREVLAAALGI
MTKFTAEPHLAAVVAEDLLAPSMLDVGDYVVQVNEGLPSGVPCTSQLNSMAHWILTLT
SLAEATGLDPDIIQANSYFSFYGDDEIVSTDVKFNPEVLTLKLKAVGLVPTRPDKTEG
PLIVSRKLEGLTFLRRTITRDKAGLFGKLDKDSILRQLYWTKGPNHQDPSESMLPHQN
RATQLMALLGESALHGQNFYKKVSGMVIKEIKNGGHEFYVPKFESMYKWMRFSDLSTW
EGDRDLAPDYVNEDGVE"
mat_peptide 4..960
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="p48"
/protein_id="YP_009701454.1"
mat_peptide 961..2055
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="NTPase"
/protein_id="YP_009701455.1"
mat_peptide 2056..2583
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="p22"
/protein_id="YP_009701456.1"
mat_peptide 2584..2985
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="VPg"
/protein_id="YP_009701457.1"
mat_peptide 2986..3528
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="Pro"
/protein_id="YP_009701458.1"
mat_peptide 3529..5058
/gene="ORF1"
/locus_tag="F7P59_gp1"
/product="RdRp"
/protein_id="YP_009701459.1"
gene 5042..6706
/gene="ORF2"
/locus_tag="F7P59_gp2"
/db_xref="GeneID:41854843"
CDS 5042..6706
/gene="ORF2"
/locus_tag="F7P59_gp2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YP_009700100.1"
/db_xref="GeneID:41854843"
/translation="MKMASNDAPPSSDGAGNLVPESHQEVLPLAPVAGAELAAPVVGQ
TNIIDPWIKENFVQAPQGEFTVSPKNAPGEILVNLELGPNLNPYLEHLSRMYNAYAGG
IEVEIILAGNAFTAGKILIAAVPPNFPVESVSASQATQFPHAIVDVRTLEPVRLPLPD
VRSNFFHYTTKDEPKMRLVIWLYTPLRTNGSGDDSFTVSGRLLTRPSMDFQFSFLVPP
TVETKTVLFTVPGLTPQEMSNSRWPAQISGMVVRGNEPQVVQFQNGRCHTDGTLLGTT
TVSEQCIAGFVGTSTNTRSATGSTTETRTGDTDLWLRLEEPNGQPYDIFGDQPAPLGT
PDFRAVIVGFASRPQTQGSYMNEAYVNTVDSHFAPATGNTKIILRRGGTGHVGGGHLW
KFRPFGVEGGEGRVSYQEYVLPNYSGATASNHNLAPPVAPRMPGELLLLFESDMPVWD
DGHGAAPAQKIHCLLPQQFITHFFDSQAPALAEAALLRYVHPDSSRVLFETKLYREGF
MVVSAPTGRFDFPLDGYFRFDSWVNSFYVLSPVGSGQGRRGRSKVV"
gene 6706..7419
/gene="ORF3"
/locus_tag="F7P59_gp3"
/db_xref="GeneID:41854844"
CDS 6706..7419
/gene="ORF3"
/locus_tag="F7P59_gp3"
/codon_start=1
/product="VP2"
/protein_id="YP_009700101.1"
/db_xref="GeneID:41854844"
/translation="MAANIFAGIAGDILGSTVSGLVNAGANAINQGVEFGFNQALQEN
SFRHDRDMLERQVAATRQLQSDLIAVREQALRRGGFSDADAARGAVGGPMTKLVDWNG
TRLAAPGAMHTTAYSGRFISAPQRTPHTYGTSKTQQTSTGTPLQSDTSSVVSQPTTST
SLSRTRTQSWVSEQQRLQPFHPNALQLTWGSVPSSSGSSVRSASTVSGTVLDSWTPAF
NLKHQPLFARFHPRGASNV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgcttcc gttgctagta gcagcactac aactgccaca
61 aacaacgaca aaacccccac caacactggg ggtgtcttct ccaacctgag ggttggaatt
121 aagaaggccc tcaattcaaa acaggggcca ctggagctta gggatggctc caataccaga
181 cctcccgata tccaacacag tgagggccag gttcggttta atgccaagga cgaaacagtc
241 caagggatcc cggacctaac aacggcgccg atacccacca tccggcaggc caagtgtgtc
301 cctcccatgt cagagagaga ggttcgtgtg gcccaagaac cacaaaccgg gtcactgctg
361 gagatgtacg atgggtcttt ctaccactac gccatttaca ttgaaaatgg attggtggct
421 ggtataaatc gaccctctaa ggccctaaca actgccactg ttgatgttga gcccatagga
481 ttgtggtggc gggtggtcta caccccgcca ttctctgtct ctacctcagc actgtaccac
541 ctccaagggg aaaagttccc ttataatgct tttgacaaca actgttacaa cttctgttgc
601 caagttttgg aactcgacga ctgctggatg agaaggcggt atgtacagag gacgtcgggt
661 ttcttcgacc cataccagag ctggaaccca aagccgtcgc agtacacagc tgactcaaaa
721 ctggagagag tgggcgacgc cctcctcacc gccttaggag ccttgttctc aaaacccatt
781 aagaacatag ttggtaaact caaaccattg aatttcttga acttattgtc ggcctgcgat
841 tggacattcg ctggcattgt ggagacggcg atcttaatag cagaactgtt tgatatctac
901 tgggatccgc ctgatgtcac taacttcttg atgcctctgc tagatgactt tgaactccaa
961 ggaccagaag acgtggcagc tgagatagtc ccgataatat taggtggcat aggaatggtg
1021 gtggggttca cagcagagaa agctggtcgc cttttgtcgt ctgcggctgc cactctgaga
1081 gccactaaag aactcggcaa ctatggactg gagattgtta aattaatcat gaagtggttc
1141 ttcccaaaga aggaaagtga catgaattcc atggtcagga atattgaaga tgctgtgctg
1201 gacctagagt ctgtagagaa caaccatatc acgcaccttc ttaaggacaa agaaaacatg
1261 gccatctttc tgcggacact agatctagag gaagagaaag ccagaaaact ctccaccaag
1321 gcggcttctc ctgacatagt ctcatctgtg aacgccctcc tggcgcggat agccgcagtt
1381 aggtcactgg cttttaaagc caaagaggag atgtgtgcca gacaaaggcc tgtggttgta
1441 atgatatcag ggaggccagg catagggaag actcactatg ccagagatct tgcttcccgc
1501 atctcaaaac tgctcaccac tgatggaagg gtcggtcttg tcccccgtaa cggggttgat
1561 cactgggacg cctatagagg agaaccagtg gtagtttggg atgattatgg tatgggtaac
1621 atcgtgaagg acgcaatgat gttacaagag ttggcggaca cttgcccggt caccctgaat
1681 tgtgaccgaa tagagaacaa gggcaagatg tttgagagcg atgtcatcgt tctcaccacc
1741 aattcaccaa acccaacacc catggattat gtcaacatgg aggctgttgc caggagagtt
1801 gacttcttgg tctatgcgga ttccccggag atcgagaaag ccaagaggga tttcccagga
1861 gatcccaagg cctggaaacc acacttcaag gatgatcact cacatctcaa cctcttgctg
1921 gccccccagg gaggctttga tcggaacggc aacacacccc atgggaaggg gcaggtcaag
1981 aacataacac caaatggtct cgttgcccgt gcagtcgcat tagcagtgga aaggagggac
2041 gacttccagc tccagggggg agagccgcag acctataatt ttgactcctc ccaagttgca
2101 gccttcagga aactggcagc agacaacaag tacggccttg ctgagactct tcgcgttggg
2161 aacaaactga ggagtgtaac caccattgaa ggttttaaga aggctgttgg agatgtcaaa
2221 tttaagaagt gcaggatcat ctggaagggc gtgacctacg atctagagtc agatgggaag
2281 ggctctgtta agatcgacag agtgcagtct cagatggtcc agacaaccgg cgagatacac
2341 caggcagtcc tgcggctgcg acaggccaga gtcagatact atgtcatgac cgcccagaat
2401 gtcgtctatg ggctacttca agccgcaggt gcggcgtttg tcctgaacag gatattcagg
2461 agagccgaga accccttttc tcgcatgatc aaggtcgaag gggaggatga tgacccccac
2521 gccgccccac ccgtgccaac aactcctaaa gttgagatag tccaggctga tattgaggag
2581 gagggcaaga agaaaggaaa gaataaacag gggcgcggtc gcaagcatac cgcgttctcg
2641 tctaaaggcc tcagtgatga agagtatgag gaattcaaac aaataagaga agaaaggggt
2701 ggcaaatatt ccatacagga gtatttggaa gaccgcgacc ggttcgaaga agaggtcgct
2761 tatgcccaag cttgtggtgg tgactgtgac gacatcgaga taggccgcat cagaaattcc
2821 atctttcgcc ccagcaggaa acagaggaaa gaggagagag ttaaacttgg tctggtgact
2881 ggaactgaga tcaggaaaag aaagccagat gacttccaac ctaaaggaaa actgtgggct
2941 gatgatgaca gaactgtgga ttaccatgaa aagctagact ttgaagcccc tgcatccatc
3001 tgggcacgag tggtgcagct tgggacagga tggggatttt gggtatcacc caatctcctc
3061 ataacatcga cacacgtcat ccccaaaggg gtcgaggaac ttttcggagt cccaatccag
3121 caagtccagg tgcacaaatg tggtgaattc acccgcttga ggtttccaaa aatgatcagg
3181 cctgatgttt ctggaatgat actggaagat ggcgccccag agggggtggt ttgcagtata
3241 ctggtcaaga ggccaacagg ggaatgcttg cccttggcag tcagaatggg cacccaagct
3301 acaatgaaaa ttcaaggtaa ggtggtttca ggccagttgg gcatgctact cacagggtcc
3361 aacgctaaga acatggacct aggaacaacc cctggagact gtggatgtcc ctatgtgtac
3421 aaaagaggca acgactacat agtcgttgga gtgcacaccg cggctggacg tggagggaac
3481 acagtcattt gcgccgttca gacgagtgat ggagaggcgg tgctggaagg gaattctgac
3541 aatggaacat actgtggggc acccattgtc tcaaaggggc gagcccctca actttcaact
3601 aaaacaaaat tctggaggag ctcagttgaa ccattaccac ctggtaccta tgagcctgct
3661 taccttggag gtcgcgaccc tagggttaac gacgggccat cactttacca ggttatgaga
3721 gaccaactta aacatttcac agctcctcgt gggcgccctg taaagccaca cttgctccag
3781 gctgctgtca agacaattga gaacacgctt gaacagacca tagatccgcc ccagccatgg
3841 agctattccc aagcatgcca gtcgctagac aagtcaacgt cgagtggctg gccccatcac
3901 gtccagaaga atacacactg gaatggtgag tcattcacag gccccctggc tgatcaggct
3961 agcagggcga accttatgta tgaacaggca aagtccatga cacctcagta cacagcagca
4021 ctcaaagatg aactagtaaa acctgagaaa gtgtatagca aggttaagaa acggctcctg
4081 tggggagctg atctaggcac tatggtgagg tgtgctagag cgtttggacc attcacagac
4141 gcgattaaga aatgctgtgt ctccctgcca attaaggtcg ggcttaacat caatgaggag
4201 ggaccaattg tgtttgagaa gcattcccag tatgagttcc actacgatgc agactactca
4261 cgctgggatt ccactcaaca gagagaggtt ttggccgcag cactggggat tatgacaaag
4321 ttcacagctg agccacactt ggccgcggtg gtggcagaag acctcctggc gcccagcatg
4381 ctggatgtgg gagattatgt ggttcaagtc aatgagggct taccatctgg ggttccctgt
4441 acatcacagt taaacagcat ggcacactgg atcctcacct taacatcgct ggcagaggcc
4501 acaggcttgg acccagatat cattcaagca aatagctact tctcatttta tggtgatgat
4561 gagatagtgt caactgatgt caaattcaac cccgaggtcc tgacgttgaa gctgaaggct
4621 gtcggcctgg tcccaacgag gccagacaaa acagaaggac cactcattgt ctccagaaaa
4681 ctggagggcc tcaccttttt gaggagaaca ataaccagag ataaggcggg actctttgga
4741 aagctggaca aggattccat cttgagacag ttgtactgga ccaagggacc caaccaccaa
4801 gacccgtcag agagcatgtt gccacaccag aaccgggcta cccagttgat ggctcttcta
4861 ggcgagtctg cattgcatgg ccaaaatttt tacaagaagg tgagtggcat ggtcatcaag
4921 gagataaaga acggaggaca tgagttctac gtgcccaagt ttgagtccat gtacaagtgg
4981 atgcgcttct cggacttgag cacttgggag ggcgatcgcg atcttgctcc cgattatgtg
5041 aatgaagatg gcgtcgaatg acgctcctcc atcatctgat ggagccggta acctcgttcc
5101 agagagtcat caagaggttt taccgcttgc tcccgtcgcg ggtgctgaac tagcagcgcc
5161 tgtggttggg caaactaata taattgaccc ctggattaaa gaaaactttg ttcaagctcc
5221 ccaaggtgaa tttactgttt ctccaaagaa tgcccctggt gaaattttgg tcaacctgga
5281 acttgggcca aatttgaatc cttacctaga acatttgtct agaatgtaca atgcttatgc
5341 tggtgggata gaggttgaga ttatccttgc aggcaatgcc ttcaccgctg gaaagattct
5401 aattgcggca gtccccccaa atttcccagt tgagagtgtg tcagcatcac aagccaccca
5461 attccctcat gcaattgtgg atgttaggac acttgaaccc gttcggctcc ctctcccaga
5521 tgtgcgatct aatttcttcc actatactac caaggatgaa cccaagatga gattagtgat
5581 ttggctgtat acccctttga gaacaaatgg tagcggagac gactctttca ccgtctctgg
5641 gagattgctg acccgcccgt caatggactt ccaattttct tttctggtcc cccctacagt
5701 ggaaaccaaa actgttctgt tcacagtccc tggtctcacc ccccaggaga tgagcaactc
5761 aagatggccc gcccagatat ctggtatggt ggtgcgcggt aatgagccac aagtggttca
5821 gttccagaat ggtcgctgcc ataccgatgg cacgctattg gggaccacca ctgtgagtga
5881 acagtgcatc gctggctttg ttggcacctc aacgaacact aggtcagcca ctggttccac
5941 tacagagact aggacaggtg atacagatct gtggctgcgg cttgaagagc cgaatgggca
6001 accctatgac atctttggag accaacctgc ccctctagga acacccgatt tccgggcagt
6061 gatagtaggg tttgcatcta gaccacagac acagggatca tatatgaatg aagcctatgt
6121 caacactgtg gactcccact tcgccccagc cacagggaat accaagatca tcctgagaag
6181 gggcggaaca ggacacgtgg gaggaggaca tctctggaaa ttcagacctt ttggagtgga
6241 gggaggcgaa ggcagagtca gttaccagga atatgtattg cccaactatt caggagccac
6301 tgcctccaat cataacctcg cccctcccgt tgccccaaga atgcctggtg agttactgct
6361 cctgtttgag tccgatatgc cggtgtggga cgatggacat ggagctgcac cggctcagaa
6421 gattcactgc ttattgccac aacaatttat cacccatttc tttgatagcc aggcaccagc
6481 actggcggag gccgcactcc tccggtacgt gcatcccgat agtagccgag tcttgtttga
6541 gacaaagctc tatagggagg gcttcatggt ggtgtcggcc ccaactggta ggtttgattt
6601 tccccttgat ggctatttta ggtttgattc ctgggttaat tctttctatg tgctttcccc
6661 cgtgggaagt ggccaaggcc gccggggtag atccaaggtg gtataatggc tgctaacatc
6721 tttgctggta ttgctgggga tattctgggc tctacggttt ccggcttagt caatgccggc
6781 gccaatgcaa taaatcaggg tgtggaattt ggttttaatc aggcccttca ggagaattct
6841 tttagacatg atagggatat gcttgaaaga caggttgcag ccacccggca gctacagagt
6901 gacctcattg ccgtgcgcga gcaggccttg cgccgcggag gcttctctga tgcagatgcc
6961 gctagaggag ctgtgggagg tcccatgaca aaattggttg actggaatgg gacgcgtctt
7021 gccgccccgg gggccatgca caccacagca tactccggga ggttcatcag cgcaccccaa
7081 aggacacccc atacttatgg aacatctaag acccaacaaa caagcactgg gactcccctc
7141 caaagtgaca cttcttcggt ggtgtcacaa cctacaactt ctacgtcctt gtctaggacg
7201 cgaacccaat catgggtctc ggaacaacag aggttgcagc ccttccaccc caacgctctg
7261 caactcacat ggggatctgt cccaagctcc agtggtagca gtgttagatc agcatccact
7321 gtcagtggca cagttcttga ttcttggacc cctgccttta atttgaaaca tcagccgttg
7381 tttgcccgat tccatccccg tggggcaagt aacgtgtaa
//