Typing tool
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Complete norovirus genomes
NC_044854 | GI.6 | ||
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GI.PNA1 |
ORF1: 5..5371 ORF2: 5355..6977 ORF3: 6977..7606LOCUS NC_044854 7693 bp RNA linear VRL 15-OCT-2019 DEFINITION Norovirus GI strain Hu/JP/2000/GI.6[PNA1]/WUG1, complete genome. ACCESSION NC_044854 VERSION NC_044854.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Katayama,K., Shirato-Horikoshi,H., Kojima,S., Kageyama,T., Oka,T., Hoshino,F., Fukushi,S., Shinohara,M., Uchida,K., Suzuki,Y., Gojobori,T. and Takeda,N. TITLE Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses JOURNAL Virology 299 (2), 225-239 (2002) PUBMED 12202225 REFERENCE 2 (bases 1 to 7693) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-SEP-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7693) AUTHORS Katayama,K., Shirato-Horikoshi,H., Takeda,N., Kageyama,T., Fukushi,S. and Kojima,S. TITLE Direct Submission JOURNAL Submitted (17-MAR-2002) Contact:Kazuhiko Katayama National Institute of Infectious Diseases, Department of Virology II; 4-7-1 Gakuen, Musashi-murayama, Tokyo 208-0011, Japan COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to AB081723. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7693 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="Hu/JP/2000/GI.6[PNA1]/WUG1" /host="Homo sapiens" /db_xref="taxon:122928" /country="Japan: Wakayama" /collection_date="2000" /genotype="GI.6[PNA1]" /note="Genotype was updated by PMID: 31483239; Stool sample collected from a child with acute gastroenteritis in a 2000 outbreak at a swimming school in Wakayama Prefecture, Japan." 5'UTR 1..4 gene 5..5371 /gene="ORF1" /locus_tag="F7P58_gp1" /db_xref="GeneID:41854841" CDS 5..5371 /gene="ORF1" /locus_tag="F7P58_gp1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="YP_009700096.1" /db_xref="GeneID:41854841" /translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNP IKIKSTEMALGLIGKTTQEVAGTSDLPPKQQRDRPPRTQEEVQYGLGWTERPMDQNVK SWEELDTTTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVKWSVRDGVNL GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF DFCCQIMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFINLGPVCRRVDFLVY CSAPEVEQIRKVSPGDTSALKDCFKPDFSHLKMDLAPQGGFDNQGNTPFGKGVMKPTT INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMAGLGKKLR GVTSMEGLKNALKGHKIGMCTIKWQAKVYSLESDGNNVNIREEKNVLTQQQQSVCAAS IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE HKCRVHQAKAAGKGPIGHDDMVEKYGLCETEEDEEVVHTEMPSATIEGKNKGKNKKGR GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDDR EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS GNTVVCAVQASEGETTLEGGDKGHYAGHEIVKHGCGPALSTKTKFWKSSPEPLPPGVY EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD TPVPWSYSDACQSLDKTTSSGFPHHKRKNDDWNGTAFIRELGEQAAHANNMYEQAKSM KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLV FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEA SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN DDGV" mat_peptide 5..1201 /gene="ORF1" /locus_tag="F7P58_gp1" /product="p48" /protein_id="YP_009701460.1" mat_peptide 1202..2290 /gene="ORF1" /locus_tag="F7P58_gp1" /product="NTPase" /protein_id="YP_009701461.1" mat_peptide 2291..2887 /gene="ORF1" /locus_tag="F7P58_gp1" /product="p22" /protein_id="YP_009701462.1" mat_peptide 2888..3301 /gene="ORF1" /locus_tag="F7P58_gp1" /product="VPg" /protein_id="YP_009701463.1" mat_peptide 3302..3844 /gene="ORF1" /locus_tag="F7P58_gp1" /product="Pro" /protein_id="YP_009701464.1" mat_peptide 3845..5368 /gene="ORF1" /locus_tag="F7P58_gp1" /product="RdRp" /protein_id="YP_009701465.1" gene 5355..6977 /gene="ORF2" /locus_tag="F7P58_gp2" /db_xref="GeneID:41854839" CDS 5355..6977 /gene="ORF2" /locus_tag="F7P58_gp2" /note="capsid protein" /codon_start=1 /product="VP1" /protein_id="YP_009700097.1" /db_xref="GeneID:41854839" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNT QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI" gene 6977..7606 /gene="ORF3" /locus_tag="F7P58_gp3" /db_xref="GeneID:41854840" CDS 6977..7606 /gene="ORF3" /locus_tag="F7P58_gp3" /note="minor structural protein" /codon_start=1 /product="VP2" /protein_id="YP_009700098.1" /db_xref="GeneID:41854840" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" 3'UTR 7607..7693 ORIGIN 1 gtgaatgatg atggcgtcga aagacgtcgt tgcgactaat gttgcaagca acaacaatgc 61 taacaacact agtgctacat ctcgattttt atcgagattt aggggtttgg gtggtggcgc 121 gagccccccc aaccccataa agatcaaaag cacagaaatg gccttgggtt taattggcaa 181 gacaacccaa gaggtggcag ggaccagtga cctaccaccc aaacagcaga gagaccgtcc 241 ccccaggacc caggaggaag ttcagtatgg tttggggtgg actgaaaggc ccatggacca 301 aaatgtcaag tcatgggagg agcttgacac cacaaccaag gaagagatct tggacagtca 361 taaagagtgg tttgatgccg gcggcttagg cccatgcaca atgccctcaa cttgtgaaca 421 agccaaagat gacagcccac ctggtgaaca ggtcaaatgg tcagtgcgtg atggagttaa 481 tcttggggtg aatcgcctca caacggtgag tggtcctgaa tggaacctct gtccgctacc 541 ccccattgac ctaaggaata tggagccagc tagtgaaccc accattggag acatgataga 601 gttttatgaa ggccatatct atcactactc catatacatt gggcagggta agacagttgg 661 tgtgcattcc ccacaggcgg cattctcagt ggctagagtg actatccaac ctatagccgc 721 ttggtggagg gtttgttata taccccaacc taaacatagg ttgagttatg atcaactcaa 781 agaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgct ttgacttttg 841 ctgccaaatt atgaatcttg aggacacatg gttacaaagg cggctaatca catcgggcag 901 atttcatcac ccatcccagt cttggtcaca gcaaacccct gaatttcagc aggatagcaa 961 gctggaacta gttagggatg ctatattggc cgcagtgaat ggcctagttt cacaaccctt 1021 caagaatttc ctaggtaagc tcaagcccct taatgtatta aacatcctat ctaactgtga 1081 ctggactttt atgggggtgg tagagatggt tatactgctc cttgagctct ttggcgtgtt 1141 ctggaacccg cccgatgtat ccaattttat agcgtccctt cttcctgatt tccacctcca 1201 ggggcccgaa gatctggccc gggatctggt tccagttatt cttggtggta tagggctagc 1261 cattgggttc accagagaca aggtcactaa ggtcatgaag agtgccgtag atggcctccg 1321 ggccgctacg cagttgggac agtatgggtt agaaatattc tcactcctta agaagtattt 1381 ctttggtgga gaccagactg aacggaccct caaaggcatt gaagcagcag taatagacat 1441 ggaggtgttg tcctccacat cagtgacaca gctggtgaga gacaagcagg cagccaaggc 1501 ttacatgaac attctggata atgaagagga aaaagcaaga aagctctctg ccaagaatgc 1561 tgaccctcat gtaatatcct caacaaacgc cctaatatcg cgtatagcta tggcgcggtc 1621 cgcattggcc aaggctcaag ctgaaatgac cagtcgaatg aggccagtcg tcattatgat 1681 gtgtggcccc cctgggattg ggaagactaa agctgcggaa cacctggcaa aacgactggc 1741 caatgagatc agacctggtg gcaaagtggg gctggtgcca cgtgaggctg ttgaccactg 1801 ggatggctat catggtgagg aagtgatgct atgggatgat tatggtatga caaaaataca 1861 agatgactgc aataagctcc aggctattgc tgattctgcc ccactcactc tgaattgtga 1921 taggatagaa aataaaggga tgcaatttgt gtcagatgca atagtcatca ctaccaatgc 1981 cccagggccc gcccctgtgg acttcatcaa tcttggcccc gtgtgcagac gggttgattt 2041 cctggtttac tgctccgccc cagaggtaga acagataagg aaagtcagcc ctggtgacac 2101 atcagcatta aaggattgct tcaagccaga cttctcccat ctgaagatgg atttggcccc 2161 acaaggaggg tttgacaacc agggaaacac accatttggc aagggcgtta tgaagccaac 2221 aaccatcaat aggctactca tacaagctgt ggctctcacc atggagaggc aggatgagtt 2281 ccggctccag gggaagatgt atgacttcga cgatgatcga gtgtcagcat tcaccaccat 2341 ggcacgcgac aacgggttgg gcatcttgag catggcgggc ttaggcaaga agctgcgcgg 2401 cgtcacatcg atggaaggtc tgaagaacgc cttgaagggg cacaaaattg gcatgtgcac 2461 aattaagtgg caggccaagg tgtattcact agaatcagat ggtaacaatg ttaacatcag 2521 agaggagaaa aacgttctaa cccaacaaca acagtcagtg tgcgctgctt ccatcgcact 2581 cacccgcctg cgggctgcgc gtgcggtggc gtacgcatca tgcatccagt cagcaataac 2641 ctccatacta caaattgctg cctcggctct tgtggtcaac agggctgtga aaagaatgtt 2701 tggcacacgc actgctgctc tgtccttaga gggccccccc aaggaacaca agtgcagagt 2761 ccaccaggct aaagccgcag ggaaagggcc cattggccat gatgatatgg ttgaaaagta 2821 tggactgtgt gagactgagg aggacgaaga agtggtccac actgagatgc catctgccac 2881 catagaaggc aagaacaaag gaaagaacaa gaaggggcgt ggccggaaga acaactacaa 2941 tgccttttcc cgtagaggac tcaatgatga agagtacgaa gagtacaaga aaatacggga 3001 agagaagggt ggcaactaca gcatccagga gtacctagag gataggcaaa ggtacgaaga 3061 ggagcttgca gaggtccagg caggtggaga cggaggaatc ggtgaaaccg aaatggaaat 3121 ccgacataga gtattctaca agtctaagag caagaaacac caccaggaag agcggcgcca 3181 actggggtta gtcacaggtt ccgacattcg aaaaaggaaa ccaatcgatt ggaccccccc 3241 taagtcagca tgggcagatg atgatcgtga agtggactac aatgagagga tcaactttga 3301 agcgcccccc accttgtgga gccgggtcac aaagtttgga tctggatggg gcttctgggt 3361 tagccccaca gtcttcataa ccacaacaca tgttatacca accagtgcaa aggaattctt 3421 tggcgagccc cttgccagta tagccatcca cagggccgga gaattcaccc tcttcaggtt 3481 ttctaagaag atcaggcccg atctcacggg catgatcctt gaggaaggtt gtccagaagg 3541 cacggtgtgc tcagtgctaa taaagaggga ttccggcgag ctactaccac tagctgtaag 3601 gatgggcgcc atagcatcaa tgcgcataca gggtcgcctt gtccatgggc agtctggtat 3661 gttgctcact ggggctaatg ctaagggcat ggaccttggg accatcccag gggattgtgg 3721 agctccttat gtctacaaga gagcaaatga ctgggtggtc tgtggtgtac acgctgccgc 3781 tactaaatca ggcaacacag tagtgtgcgc cgtccaagcc agtgaggggg aaaccacgct 3841 tgaaggaggt gacaaaggcc actatgccgg acatgagata gtcaaacatg gatgtggacc 3901 agccctatca accaaaacaa aattctggaa atcatctcct gaaccactgc cccctggggt 3961 ctacgagccc gcataccttg gtggccggga tccaagggtg agtggtggtc cttcgctcca 4021 acaggtgtta cgggatcagt tgaagccatt tgctgagcca cgggggcgta tgccagaacc 4081 aggtctcttg gaggccgcag ttgagactgt gacctcatca ctagagcagg ttatggacac 4141 cccagtgccg tggagttaca gcgatgcgtg ccaatccctc gataaaacca ccagttctgg 4201 tttcccccac cataagagga agaatgatga ctggaatggc accgccttca ttagggaact 4261 aggagaacaa gcagcgcacg ctaacaacat gtatgaacaa gccaaaagca tgaagcctat 4321 gtacacggca gcgcttaagg atgaattagt gaagccagaa aaagtgtacc aaaaagtgaa 4381 aaagcgcttg ctctgggggg cggacctagg aacagtgatc cgggctgcac gagcttttgg 4441 cccattttgt gatgccataa agtctcacac aatcaaacta cctatcaaag ttgggatgaa 4501 ttcaattgag gacgggccac taatctatgc agaacattca aagtataagt accactttga 4561 tgcagattat acagcttggg attcgacaca aaacaggcaa attatgacag agtcattctc 4621 catcatgtgc cgtttgactg cttctccaga attggcctca gtggtagcgc aagacctgct 4681 tgcaccctca gaaatggacg ttggtgacta cgtcattagg gtgaaggaag gccttccatc 4741 tggttttcca tgtacatcac aggtcaatag cataaatcac tggttaataa ccttatgtgc 4801 cctctctgaa gtgactggtc tatcaccaga tgttattcag tccatgtcat acttttcttt 4861 ctatggtgat gatgaaatag tttccactga catagagttt gacccagcaa agttgacaca 4921 agtcctcaaa gaatacggcc tcaaacctac ccgacctgat aagagcgaag gtccaataat 4981 tgtaagaaag aatgtggatg gcctagtctt tttacgccgt accatttccc gtgatgccgc 5041 ggggttccag gggcgactag accgggcatc cattgaaagg cagatctatt ggaccagagg 5101 gcccaaccac tcagaccctt ttgaaacctt agtgccccac cagcaaagaa aagtccaatt 5161 gatatcactg ctgggtgagg cctcattgca tggtgaaaag ttctacagaa aaatttctag 5221 caaagtcatc caagagatca agacaggggg ccttgaaatg tacgtaccag ggtggcaagc 5281 catgttccgc tggatgcggt tccatgatct tggtctgtgg acaggagatc gcaatctcct 5341 acccgaattt gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca 5401 gtggcgctgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg 5461 ttgcgggtgc ttcaacagca gtcgcaacag ctgggcaagt taatatgatt gacccatgga 5521 ttttcaataa cttcgtccag gcaccccaag gagaatttac tatttcccct aataataccc 5581 ccggtgacat tttgtttgat ttacaattag gaccccacct taatccattt ctagcccacc 5641 tctcacaaat gtataatggt tgggtcggca atatgcgtgt acgtatattg ttggcaggga 5701 atgcttttac agctggtaag ataatcattt gctgtgtccc ccctggcttt gatgctagaa 5761 tacttacaat agcccaagca actctctttc cacacttgat tgctgatgtt aggactcttg 5821 agcctgtgga gctccctctg gaggacgtgc gcaacgttct ctatcacaac agcagccagc 5881 cgcagccaac aatgcggttg gtagctatgt tgtacactcc cctccgcact ggtggtggct 5941 ccggaggtac tgatgccttt gtggttgcgg gcagggtgct cacgtgcccc gcccctgatt 6001 tcagctttct gtttctcgtc cccccctccg ttgagcagaa gactagggtt tttagtgtcc 6061 ccaacatacc cctgaaagac ctttcaaatt ctcgtgtccc tgtgcctata cagggcatgt 6121 tcatgtcccc agatgtcaat cagtcagtcc agttccagaa cgggcgctgc cagatcgatg 6181 gtcaactcca gggcactacc cctgtctcgc tcagtcaact ttgcaagatt aggggtaaga 6241 cttcaagcaa tgccagggta ctcaacttaa gtgaggtgga tggcacaccc tttatccctc 6301 ttgagtctcc agcaccagtt ggttttcccg acttaggagg ttgtgactgg catgtaaact 6361 tcactttcca ggctcagaat caggacccat ctcaaagtgt gacctttgca actaatgatg 6421 ctagctttgt tccctactta ggcagcattt ctcctcacaa tgggggggat tttcatgcag 6481 gtgacatcat aggcagcctt ggctggattt cagccccgtc tgacaataca caacttaatg 6541 tctggacaat accaaagtat gggtctagtc tcccagatgt cactcacctt gcacctgctg 6601 tgttcccccc aggctttggg gaggtgattc tgtacttcta ctctacattc ccaggttctg 6661 gacaacctag tcagcttcaa gtgccatgcc tgttgcctca ggagttcatc acccacttct 6721 gcaatgaaca ggctcccatc gctggggaag ctgctctcct ccattacgtg gaccctgaca 6781 cgggacggaa cctgggggaa ttcaaactct atcctgatgg gttcatgacc tgtgtcccca 6841 atagtgttag tagtggccct caaacccttc ctatcaatgg agtctttgtc tttgtttcat 6901 gggtatccag attttatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg 6961 gactgcggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg 7021 tagtatactg ggggcaggca tacaggctgg tgctgaggct ggtctccagg ctcaacggta 7081 ccagcaagac ttgcaattgc agcaaaactc tttcaagcat gatagggaaa tgttaggtta 7141 tcaggttcag gctagtaatg ctcttttagc taagaatctt aacactagat atgctcttct 7201 gcaggcaggg ggtctgtcta gtgctgatgc tgctcgggca gtggctggtg ctcctgtcac 7261 ccgtatagtg gactggaatg gcacgcggat tgcagcgcca acctcgagca ccactacact 7321 tagatctggt ggttttatgg ctgtccctat accattgtct tcaaagacca agcaaccagt 7381 gatgtctggg caggataatc caaattatgc tgcttcttct atctctagaa ctgcttcatg 7441 ggtacaatct caaaattcta tgagatctgt ttctcctttt cacagtgatg ctctgagaac 7501 cgtgtgggtc acaccaccag gttcgtcatc aacttcatct gtgcaatcta gtttttatgg 7561 tgtttttaat acagataggt tgcctctgtt cgcaaacaga aggtgatatt tttgtaatag 7621 gatgccggtg ggcaccatat tcagatttaa ttttaattgg atattttaat tacaatttgg 7681 cttaattggt gtt //