Typing tool
|
Complete norovirus genomes
NC_044045 | GIX.1 | ||
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GII.P15 |
ORF1: 5..5101 ORF2: 5082..6749 ORF3: 6749..7480LOCUS NC_044045 7551 bp RNA linear VRL 31-JUL-2019 DEFINITION Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299, complete genome. ACCESSION NC_044045 VERSION NC_044045.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299 ORGANISM Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7551) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-JUL-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 7551) AUTHORS Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K., Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and Katayama,K. TITLE Direct Submission JOURNAL Submitted (17-JAN-2014) Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama, Tokyo 208-0011, Japan COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to KJ196290. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7551 /organism="Norovirus GII/Hu/JP/2007/GII.P15_GII.15/Sapporo/HK299" /mol_type="genomic RNA" /isolate="Sapporo/HK299" /host="Homo sapiens" /db_xref="taxon:1529918" /country="Japan" /collection_date="2007" /genotype="GIX" /note="The genotype was updated from GII.P15_GII.15 to GVIII to conform to CaliciNet genotypes" 5'UTR 1..4 gene 5..5101 /gene="ORF1" /locus_tag="FQV34_gp1" /db_xref="GeneID:40888220" CDS 5..5101 /gene="ORF1" /locus_tag="FQV34_gp1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="YP_009679034.1" /db_xref="GeneID:40888220" /translation="MRMASSDVATAFGSQKATNDSYNTPPPNKEEASVLTNVKVGFKK ILGAVPKASRQHGNTQKPSTVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFNNNCYNFCCWVLD LNDSWLNRRSINRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPENLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIASSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLISLERVLPKGVSELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL GKAPKLCTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMSEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /locus_tag="FQV34_gp1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /locus_tag="FQV34_gp1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /locus_tag="FQV34_gp1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /locus_tag="FQV34_gp1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /locus_tag="FQV34_gp1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /locus_tag="FQV34_gp1" /product="RdRp" gene 5082..6749 /gene="ORF2" /locus_tag="FQV34_gp2" /db_xref="GeneID:40888219" CDS 5082..6749 /gene="ORF2" /locus_tag="FQV34_gp2" /codon_start=1 /product="VP1" /protein_id="YP_009679035.1" /db_xref="GeneID:40888219" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSV PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" /locus_tag="FQV34_gp3" /db_xref="GeneID:40888218" CDS 6749..7480 /gene="ORF3" /locus_tag="FQV34_gp3" /codon_start=1 /product="VP2" /protein_id="YP_009679036.1" /db_xref="GeneID:40888218" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSISSLSTSSTRV PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVKKRGQSQV" 3'UTR 7481..7551 ORIGIN 1 gtgaatgagg atggcgtcga gtgacgtcgc tactgccttt ggcagccaga aagctaccaa 61 tgacagctat aacacacccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa 121 agttggtttt aagaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacac 181 acaaaaaccg tcgaccgttg agatcgatgg tgtggccatg cgtgtgccct ctcccccccc 241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga 301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cactgagtga 361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaaa tgtgggatgg 421 tgagttctac cactactcca tatatgtgga caatggcaag gcccttggtg tgcacaaacc 481 accagcagca atcagccttg caacgataga tttaacacct atatcgttgt attggagacc 541 ggtgtataca ccgccgtacc ttgtccaccc agagacactc aaagggctgg ctggtgaaaa 601 gtttccctat acagctttca acaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattca tggttgaatc ggaggtccat aaacaggaca actggatttt tcaaacccta 721 ccaagcctgg aacaggaagc ccctcccaac tgtggatgat ggtaagatca agaaggttgc 781 gaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccatcaagg acctccttgg 841 gaagctaaaa ccccttaacc tcctaaatct gctcgcatca tgtgactgga cctttgctgg 901 tgtagtagaa acagttattc ttgcagcaga gctcttcaat gtcttttgga ccccccctga 961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaaaacct 1021 cgctgtggag cttgtccccg ttatcatggg aggcattggc atggtgttag gattcacagc 1081 tgagaagata gggcgcatgt tgtcatctgc agcatccact cttagagctt gtaaggatct 1141 tggtaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga 1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc 1261 aattggcaac aaccatctca caacattgct caaagacaag gacagcctaa acgcctacat 1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc 1381 cgacattgtt ggcaccatca acgcaatcct tgcccgcatc gccgcagcaa gatcactcct 1441 gcataaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtaa tggtctccgg 1501 gagaccaggg atcgggaaga cttacctggc tagacaactt gctaagtcaa tagcaagcag 1561 catgagtggt gatcagaggg taggacttgt cccccgcaat ggtgttgacc attgggacgc 1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga 1681 cgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacaggat 1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa 1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt agacgaattg acttccttgt 1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat 1921 gtggcgtgac catttcaaag ctgattcgtc acatataaag ttgtcattag ccccacaggg 1981 tggtttcgac aaaaacggaa acacccctca tgggaagggc accatgaaaa ccctcacgct 2041 gcattcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggacg agttccaatt 2101 gcagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa 2161 attggcagct gacaacaagt atagttttgt ggagacaatg aaagttggtg cggtcctcaa 2221 gaatgtgcga accctggagg acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg 2281 tgaaataatc tacaaagggg ctaagtacag ggtcgcctcg gatggctgtg gcagtgtctc 2341 ggtctccaag atcaaggatg ttgcatcaca gacagccaat gaagtgcata cagcgctcct 2401 gagactgagg caggcccggg ccagatatta catcagctgc ttccaagatc ttatctatac 2461 actgatccag gttgctggag cctcatttgt ggtgcacagg atctcaaaga gattctcctg 2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccta gcagtgagga 2581 ggccacagga agatgggaaa ttgagccaaa ggacacagac cctgaaggta agaagggtaa 2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga 2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga 2761 atacctccag gaccgtgata gattttatga ggaagtggca gtcgcaaggg ccacggaaga 2821 agacttctgt gaagaagagg tggcaaaaat tagacagaga attttcagac ccacaaagaa 2881 acagaggaag gaggaacggg gcgtccttgg actagtcacc ggttcggaaa tcaggaagag 2941 aagaccagat gacttccaac ccaaaggtaa tttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct 3061 tggtactggt tggggtttct gggtctcctc caacctcctc atctctctgg aacgagtcct 3121 gccaaaagga gtgagtgagc tgttcggagt tgacatcaaa caaattcaga tacacaagtc 3181 aggtgagttt tgcaggttca ggtttccaag acctatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatc ctcgtcaaaa gaccgactgg 3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag 3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct 3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt 3481 ggtagctggg gttcacaccg cagctgcaag gggtggcaac actgtgatct gtgccacgca 3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc 3601 cccaatactt ggacttggga aggcccctaa gctctgcact aaaacaaagt tctggcgttc 3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc 3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac 3781 cgaacccaga ggaaaaccgc caaagcccag cgttctcgat gaggcaaaga aaactgtgat 3841 gaatgtgttg gagcaaacca taaaccctgc caaaccctgg tcatactcac aagcatgtgc 3901 ctcacttgac aaaacgactt caagtggtag cccacaccac ctaaggaaga atgatcactg 3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta 4021 tgaacaggca aaacacgtga gccccgttta caccgcagcc ctcaaagatg aactagtcaa 4081 gactgacaag atttataata agataaagaa gaggttgcta tggggttctg acctgggtac 4141 catggtcagg tgtgccagag cctttggtgg gttaatggac agcatgaaag agagttgtgt 4201 gatgttgccc tgcagagttg gaatgaatat gaatgaggat gggccaatca tttttgacaa 4261 acatgcaaaa tataaatacc actatgatgc agactactcc agatgggact ccacgcagca 4321 aagatgcatc ttgtctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaatt 4381 ggcacaggtg gtggctgaag acctactcgc cccgagccaa ctcgacgtgg gcgattttgt 4441 ggtgtcagtt caggaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat 4501 agcacactgg atcattaccc ttagtgcaat gtcagaagtc tctggtctct ccccagatgt 4561 gatccaagcc cactcatgct tctcttttta tggtgatgat gagatagtta gcacagatat 4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag 4681 accagacaaa actgagggcc cactagtcat tacagagaac ctccacgggt tgaccttcct 4741 acgcaggcac atcacacgag accctgctgg atggtttggt aagttagacc aggattcaat 4801 tttgagacag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt 4861 tccgcactca cagcgcgcga cccagctaat ggcgttgttg ggtgaggcat cgctacacgg 4921 tccccagttt tacaagaaag ttagcaagat ggtcatcaat gagatcaaaa gtggtggtct 4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt tccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgttgca gggcaaagta 5221 acataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa 5341 acccctatct caaccacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg 5401 aagttgttct tgccgggaat gcgttcacgg caggtaagat cttgtttgca gctgtgcccc 5461 ccagcttccc aacccatggt atctctgcag cacaggctac tatgctaccc catgtgattg 5521 tggatgtcag gcagttggag cctgttcggc tccccctccc tgacgtcagg aatgtgatgt 5581 ttcacttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggagct ggtgatgatg ttttcaccgt ctcatgtcgt gtgctaacaa 5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga 5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcccacag 5821 gtatcacaca gctttatacc agtccaaaca ccaatttggt tgtccagttc caaaatggca 5881 ggtgcctact tgatggtaca cttcttggta ctacccctgt cagagctgct gacatctgca 5941 gttttagagg ggtcacatca actgaagtag atgcaactga cagccccagg gtggcagggt 6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc 6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc accctcagtc 6121 aaagaaacac tggtggagct gggcagaatt ctaacagagc ccacttcgca tatttctaca 6181 caagaaaccc cacctttgca ccaggcatag ggactgttgt attttctttt gacaccactg 6241 attttcaaaa tcgtcaacct accaaatttt ccccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt caatcagttt tccctgccat attataatgg atcactcggt gcagtggacg 6361 ctggaaaact ggctccacct gtggcaccca attatccagg tgagcagatt ctttatttca 6421 gagggagtgt acctttcaaa ggtggttatg gagaaggtga gattgacagt ttgcttcccc 6481 aggaatggat tacccatttc tatgcagagc aggcccccac acaaggtgac gcagccctgc 6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc catcgtgaag 6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtgccggtc aatggagtct 6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg 6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctt ggcagcggtt tatcttctct tattggtgcc ggtgccaatg ctataaacca 6841 gaaagttgaa tatgattaca ataggcattt gcaatcagct tctttccaac atgataagga 6901 catgctcagt tcacaggtgg aagccacaaa acacctgcag agggaaatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa 7021 cgctcctatg acacaaatct tggactggaa tggcaccaga tattgggccc caggtgcaat 7081 gaaaaccacg gcctactcag gtcgttttgt cagccaatcc actcacaggc ccattcccaa 7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctatctc 7201 ttctctttcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtacttc 7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggttctct 7321 tcaaactgct tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac 7381 agtcccacat tatgttttag attcatggac cccttctttt aacactaagc atttacccct 7441 gtttgcccac gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggttttat 7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t //