Typing tool
|
Complete norovirus genomes
MZ958411 | GII.4 Sydney | ||
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GII.P16 |
ORF1: 1..5094 ORF2: 5075..6697 ORF3: 6697..7503LOCUS MZ958411 7565 bp RNA linear VRL 04-SEP-2021 DEFINITION Norovirus GII isolate GII/Hu/RU/2017/GII.4_Sydney[P16]/Nizhny_Novgorod2275 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MZ958411 VERSION MZ958411.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7565) AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F. and Novikova,N.A. TITLE Direct Submission JOURNAL Submitted (30-AUG-2021) Laboratory of Molecular Epidemiology of Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny Novgorod 603950, Russia COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. v. 3.11.1. Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7565 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/RU/2017/GII.4_Sydney[P16]/Nizhny_Novgorod 2275" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Russia: Nizhny_Novgorod" /collection_date="12-Sep-2017" /note="genotype: GII.4_Sydney[P16]" gene <1..5094 /gene="ORF1" CDS <1..5094 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QZP04312.1" /translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ PAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS WLSRRMVQRTTGFFRPYQEWNRKPLPTVDDSKIKKVANIFLCSLSTLFTRPIKDLIGK IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREV ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNEPETKEEAP KSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG ENFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSIFRQMYWTRGPNH EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM FRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..990 /gene="ORF1" /product="p48" mat_peptide 991..2088 /gene="ORF1" /product="NTPase" mat_peptide 2089..2619 /gene="ORF1" /product="p22" mat_peptide 2620..3018 /gene="ORF1" /product="VPg" mat_peptide 3019..3561 /gene="ORF1" /product="Pro" mat_peptide 3562..5091 /gene="ORF1" /product="RdRp" gene 5075..6697 /gene="ORF2" CDS 5075..6697 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QZP04313.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRCHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV" gene 6697..7503 /gene="ORF3" CDS 6697..7503 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QZP04314.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWNGTRYWAPDARTTTYNTGRFSTPQPSGALPGRANLRDAVPARGPSNKSS NFSTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atggcgtcta atgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa 61 tcttcaggtg aaggcttatt tacaaatatg tcttccacct taaagaaagc cctcggggct 121 aggcccaaac agcctgcccc gagagacgaa ccacaaaagc ccccaagacc accaactccc 181 gagttggtca agaggatacc ccctcctcca cctaatggcg aagaagaaga agaaccagtc 241 attaggtatg aggttaagag tgggatctct ggcctgcccg agctcacaac agtcccccaa 301 ccggacgtgg ccaacacagc atttagtgtt ccaccactga gcttgagaga aaacagggag 361 gccaaggaac cgctaacagg ggcaatatta gagatgtggg atggagagat ataccactat 421 ggcctgtacg tggagaaagg cttagtgttg ggtgtgcaca aaccacctgc agccataagc 481 atggcaagag tggagctgac gccgctgtca ttgtactggc gtgtggtgta cactccccaa 541 tacctcatct cccctgaaac tctcagaagg ctcaacggag aggcgttccc ttacaccgcc 601 ttcgacaaca actgctatgc cttttgctgc tgggtgttag acctcaatga ctcatggctt 661 agcaggagga tggtgcagag aacaacgggc ttcttcagac cttaccaaga gtggaacaga 721 aaacccctgc ctaccgtgga tgactccaaa attaagaagg tagcaaatat attcctatgt 781 tcattgtcca cattattcac cagacccata aaagacctca taggaaaaat taaaccatta 841 aacatattga acatcctggc aacgtgtgac tggacgtttg ccggaatagt ggagtctctg 901 atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc tgctatgatc 961 gctcccttac tcggggacta cgagttgcaa gggccagaag acctcgctgt cgaactcgta 1021 ccagtggtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa aattggcaaa 1081 atgttgtcct cagcagcatc aacactcagg gcttgcaaag atcttggtgc ctatggctta 1141 gagatactca aattggtcat gaagtggttc ttcccaaaga aagaggaggc caatgagcta 1201 gccatggtga gggccataga ggatgccgta ctagatcttg aggcaataga aaataaccac 1261 atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaaaac actggacatg 1321 gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat agttgggaca 1381 atcaacgccc tgctggctcg gatagcagcg gccaggtcat tagtccacag ggccaaggaa 1441 gagctatcta gcaggatgag accagtagtt gttatgatat ctggcaaacc aggaataggc 1501 aaaactcatc tggccaggga ggtggcgaga aaggtggcat ctactctcac aggggatcag 1561 agagtcggac tcataccaag aaacggtgtg gaccattggg acgcatacaa aggtgagaga 1621 gtcgtgctgt gggacgacta tggcatgagt aaccccattc atgatgctct ccgcatacaa 1681 gaattggctg atacgtgtcc ccttacctta aattgtgaca gaattgaaaa taagggaaaa 1741 gtttttgaca gtgaagtcat aataattaca acaaaccttg ccaatccagc cccacttgat 1801 tatgtcaact ttgaggcctg ttccaggaga attgatttcc tggtgtacgc tgaggcacca 1861 gaagtagaaa aggcaaaacg ggactttcct ggtcagccag atatgtggaa ggacgccttc 1921 aagccggact tttcacacat caagctacag cttgcacctc agggcggctt tgacaagaat 1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggttc tctgattgcc 2041 cgtgcatcag gcctactgca tgagaggatg gatgaatttg aactccaagg tcccacaatc 2101 accaccttca atttcgaccg gaatagaatc acagcattca gacaattggc tgcagaaaac 2161 aagtatggat tggtggatac catgaaagtt ggcaatcaac taaaaggagt gaaaaccatg 2221 gaagaactca aacaagcaat caggaatgtg accatcaaga ggtgccggat catctacggt 2281 ggctccacgt atgaccttga atctgatggc aagggcaaag ttttggtgga aaaggtcaag 2341 aacacctctg tacagaccaa caacgagttg gccggggccc tgcaccatct caagcacgcc 2401 cgaatcaggt actatgtcaa atgtgtgcaa gaagcagtct attccattat acaaattgcc 2461 ggcgctgcgt tcgtcaccac gcgcattgca cgccgcatga acatacaaga actctggtcg 2521 aagccacaat tagatcaaaa tgaaccagag actaaggaag aggcccccaa gtcagaagat 2581 gacgagttca tcatatcttc taaggacatc aaggaggaag gaaagaaggg caaaaacaaa 2641 actggccgtg gcaagaaaca cactgcattc tccagcaagg gcttgagcga tgaggagtat 2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggagtatctt 2761 caagacagag ataggtacta tgaggagctc gccattgcca aggctacgga agaagacttc 2821 tgtgaagagg aggagatcaa aatccgtcag agaattttcc gtcccaccag gaaacaaaga 2881 aaggaagaga gggccacatt agggctagta acaggttcag aaatcagaaa aagaaaccct 2941 gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt tgactacaat 3001 gagaaactgg actttgaggc ccccccaagc atatggtcta ggattgtgag ctttggttct 3061 ggctggggct tctgggtatc accaagcctg ttcataacat caactcatgt aatccccgca 3121 ggcataacag aagcatttgg agtccccatc aaacaaattc agatccacaa atcaggtgaa 3181 ttttgccgat tcagattccc aaaaccaatt agaccagatg tgacaggaat gatcttagaa 3241 gaaggtgcgc ctgaaggcac cgtggcaact gtgctcatca aacgccccac cggagagctc 3301 atgcctcttg cagccagaat ggggacacac gcaaccatga aaattcaagg ccgcatggtt 3361 ggcggacaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga tttgggaaca 3421 actcctggtg actgtggctg tccttacatc tataaaaggg gcaatgacta tatagtcatt 3481 ggggtgcaca ctgcagcagc ccgtggtggg aacaccgtca tctgtgccac acagggaagt 3541 gagggtgagg caactcttga gggtggagac gacaaaggaa catactgtgg ggcacccatt 3601 ctaggccctg ggggtgcacc aaaattgagc accaaaacca aattttggag gtcatcgaac 3661 acgccccttc caccagggac atacgagcct gcctacctcg gtggccgtga tccgcgtgtt 3721 aagggtgggc cctccttgca gcaggtaatg agagaccagt tgaagccatt cactgaaccc 3781 aggggcaaac ctccaagacc aagtgtattg gaagcagcca aacaaaccat tatcaatgtc 3841 ctcgaacaaa ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcctcactt 3901 gacaaaacca cctccagcgg gcatccccat cacgtccgaa agaatgaatt ctggaatggt 3961 gagaacttca ctggtaaatt ggcagaccaa gcatcaaaag caaacctaat gtttgaggag 4021 gggaaacaca tgacaccagt gtatacagca gcactcaagg acgagctagt caagaccgag 4081 aaaatctatg gaaagatcaa gaagagactg ctctggggct ctgacttgtc caccatgatc 4141 cggtgcgcta ggtcatttgg tgggctcatg gacgagatga aggcacactg catatcactc 4201 ccagtacgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga gaaacattcc 4261 agatataaat atcactatga tgcagactac tctcgttggg attcaacaca acagagggca 4321 gtactagcag cagccttgga aatcatggtc agattctctg cagaaccaca attggcacaa 4381 atagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt taaaatcaca 4441 ataaatgaag ggctcccatc tggtgtgcca tgcacttctc aatggaactc catcgcacac 4501 tggctgctaa ctctctgtgc cttgtctgag gtcaccaaac tgtcccctga cattatacaa 4561 gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga tataaaattg 4621 gaccctgaac agttaaccgc caagttgaag gagtacggcc tgaaaccaac ccgcccagac 4681 aagaccgagg gacccctgat catcagtgaa gatttgaacg gactcacttt cctccgaagg 4741 acggtgactc gtgacccagc tggttggttt ggaaagctgg accaaagctc aatttttagg 4801 cagatgtact ggactagagg accaaatcat gaagacccca atgagacaat gataccccat 4861 tcccaaagac ccatacagct catggcactg cttggtgaag cctctcttca cgggccctct 4921 ttctacagta aaatcagtaa attggtcata actgaactca aagaaggtgg gatggacttt 4981 tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg 5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga gtgacgccaa 5101 cccatctgat gggtccgcag ccaacctcgt accagaggtc aacaatgagg ttatggcttt 5161 ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa atgtaattga 5221 cccctggatt agaaataatt ttgtacaagc ccctggtggg gagtttacag tatcccccag 5281 aaacgctcca ggtgaaatac tatggagcgc gcccctaggc cctgacctaa atccctacct 5341 atcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct 5401 cgcagggaac gcgttcaccg ccgggaagat catatttgca gcagtcccac caaattttcc 5461 aactgaaggc ttaagtccta gccaggtcac tatgtttccc catataatag tagatgttag 5521 acaattagaa cctgtgctga ttcccttacc cgatgtcagg aataatttct atcattataa 5581 tcagtcaaat gactccacta ttaagttgat agcaatgttg tatacaccac ttagggctaa 5641 taatgctggg gatgatgttt tcacagtttc gtgccgagtt ctcacgagac catcccccga 5701 ttttgatttc atatttttag tgccacccac agttgagtca agaactaaac cattctctgt 5761 cccagtttta actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt 5821 gttcacgggc cccagcagtg cctttgttgt tcaaccacaa aacggcaggt gcacaactga 5881 tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct tcagagggga 5941 tgtcacccat atcacaggta gtcgcaacta cacaatgaat ttggcttctc agaattggaa 6001 caactatgac ccaacagaag aaatcccagc ccctctagga actccagatt ttgtggggaa 6061 gattcaaggc atgctcaccc aaaccacaag gacagacggt tcaacacgct gccacaaagc 6121 tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac 6181 tgacacagac catgattttg aagctaatca aaacacaaag ttcaccccag tcggtgtcat 6241 ccaagatggt agcaccaccc accgaaacga accccaacag tgggtgctcc caagttactc 6301 aggcagaaat actcacaatg tacatctggc ccccgctgta gcccccacct ttccgggtga 6361 gcagcttctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt 6421 ggactgtctg ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcaca 6481 atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg 6541 caagcttcac aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat 6601 cccccccaat ggttacttta ggtttgattc ttgggtcaac cagttctaca cgcttgcccc 6661 catgggaaat ggaacggggc gtagacgtgt agtataatgg ctggagcttt ctttgctgga 6721 ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc 6781 atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt 6841 agcagcaatt tgcaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt 6901 gaggccacca aaaagctaca acaggaaatg atgaaagtta agcaggcaat gctcctagag 6961 ggtgggttct ctgagacaga tgcagcccgt ggggcaatta acgcccccat gacaaaagct 7021 ttggactgga acgggacaag atactgggct cccgatgcta ggactacaac atacaataca 7081 ggccgctttt ccacccctca accatcgggg gcactgccag gaagagccaa tctcagggat 7141 gctgtccctg ctcggggacc ctccaacaaa tcttctaact tttctactgc cacctctgtg 7201 tactcaaatc aaactatttc aacgagactt ggttctacag ctggttctgg aaccagtgtc 7261 tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaag taggaatttg 7321 tcacctttca tgaggggggc ccacaacata tcatttgtca ccccaccatc tagcagatcc 7381 tctagccaag gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct 7441 ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga gtcacgggtg 7501 taatgtgaaa agacaaaatt gattattttt ctttttcttt agtgtctttt aaaaaaaaaa 7561 aaaaa //