Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| MZ546183 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 84..5177
ORF2: 5158..6780
ORF3: 6780..7586
LOCUS MZ546183 7586 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-10, complete genome.
ACCESSION MZ546183
VERSION MZ546183.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7586)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7586)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7586
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-10"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 84..5177
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75120.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRGQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5158..6780
/codon_start=1
/product="VP1"
/protein_id="QZA75121.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6780..7586
/note="polyprotein"
/codon_start=1
/product="VP2"
/protein_id="QZA75122.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRANPRDAVPARGPSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGASVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cttcgggggc ggctgtttag gccgcgcccc gagggcccgc ttaaaagtga cagccatgtt
61 agaaaacata ccgtcacttg aagatggcgt ctaacgacgc ttccgctgcc gctgttgcca
121 acagcaacaa cgacatcgca aaatcttcaa gtgacggtgt gttttctaac atggctgtca
181 cttttaagcg ggccctcggg gcgcggccta aacagccgcc cccgaaggaa ataccaccca
241 gacccccgcg accacccaca ccagaattgg tcaaaaagat ccctcctccc ccacccaacg
301 gggaggatga actagtggtc tcttacagcg ccaaagatgg cgtttccgga ctgcctgagc
361 tcaccactgt cagacaaccg gaagaaacca acacggcgtt cagtgtcccc ccactcaatc
421 aaagggagag cagggacgct aaggagccac taactggaac aatcattgaa atgtgggatg
481 gagaaatcta ccattacggc ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc
541 caccggcagc cattagcctt gccaaggtcg agctagcacc actctctttg ttctggagac
601 ctgtatacac cccccagtat ctcatctctc cagacactct taggagatta catggagagt
661 cattccccta cactgcattt gacaacaatt gctacgcctt ttgttgttgg gtattagacc
721 taaacgactc atggctaagc aggagaatga ttcagagaac aacaggtttc ttcaggccgt
781 accaggattg gaataggaaa cccctcccca ctatggatga ttccaaatta aagaaggtag
841 ccaacatatt cttgtgcact ttgtcttcac tattcaccag acccattaag gacataatag
901 ggaagttgaa acctcttaac atccttaaca ttctggctac atgtgactgg accttcgcag
961 gcatagtgga atccttaata ctcttggcag aactctttgg agttttctgg acacccccag
1021 atgtgtctgc gatgatcgcc cccttgctag gtgattatga actgcaagga cctgaggacc
1081 ttgcagtgga actggtccca atagtgatgg gggggatagg tttggtgcta ggatttacca
1141 aagagaaaat tggaaagatg ctatcatccg ctgcatccac tttaagagct tgtaaagacc
1201 ttggtgcata cggactggaa attttaaaat tggtcatgaa gtggttcttc ccaaagaaag
1261 aggaagcaaa tgaactggct atggtgagat ccatcgagga tgcagtacta gacctcgagg
1321 caattgaaaa caaccacatg accaccctac tcaaagacaa agacagcttg gcaacctaca
1381 tgagaaccct tgaccttgag gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac
1441 ccgatattgt gggcacaatc aactctcttc tggcaagaat cgctgctgca cgttccctag
1501 tgcaccgggc gaaagaagag ctctccagca ggccgagacc tgtcgttgtg atgatatcgg
1561 gaagaccagg aatagggaaa acccaccttg ccagggagct ggccaagaag atcgcggctt
1621 ccctcacagg ggaccagcgt gtgggtctta tcccacgcaa tggtgtcgac cactgggacg
1681 catacaaggg cgaaagagtt gtcctatggg acgactatgg aatgagcaac cccatccatg
1741 atgccctcag gttacaggag cttgctgaca cttgccccct cacgctaaac tgtgacagaa
1801 ttgagaacaa agggaaagtc tttgacagtg atgccataat tatcaccacc aatctggcca
1861 acccagcacc actggattat gtcaactttg aagcgtgctc gagacgcatt gatttcctcg
1921 tgtacgcaga agcccctgag gtagagaagg caaagcgtga cttcccaggt caacctgaca
1981 tgtggaagaa cgctttcagt cctgacttct cacacataaa actgtcattg gctccacagg
2041 gtggttttga caagaacggc aacaccccgc atggaaaagg ggtcatgaag accctcacca
2101 ctggctccct catcgcccga gcatcagggt tactccatga gaggctagat gaatatgaac
2161 tgcagggccc agccctcacc actttcaact ttgaccgcaa caagatactt gcttttagac
2221 aacttgctgc tgaaaacaag tatgggctga tggacacaat gagagttgga aaacagctca
2281 aggatgtcaa gaccatgtca gacctcaaac aagcactcaa gaacatcgcg atcaagaagt
2341 gccagatagt gtacaatggt ggcacctaca cacttgaggc tgatggcaag ggtagtgtga
2401 aagttgacaa agtgcagagt gccactgtgc agaccaacaa tgaactagcc ggtgccctac
2461 accacctaag gtgcgctaga atcagatact atgttaagtg cgtccaagag gcactgtatt
2521 ccatcatcca aatcgctggg gctgcattcg tcaccacgcg catcgccaag cgcatgaata
2581 tacagaatct ctggtccaag ccacaggtgg aagacacaga agagatggcc aacaaagatg
2641 gttgcctaaa acccaaagat gatgaagagt ttgtcgtctc atccgacgac atcaaaactg
2701 agggcaagaa ggggaagaac aagtccggcc gtggcaagaa gcacacagcc ttttcaagca
2761 aagggctcag tgatgaggag tacgatgagt acaagagaat cagagaagaa aggaacggta
2821 agtactccat agaagagtac cttcaggaca gagacaggta ctacgaggag gtggccattg
2881 ccagggcaac cgaagaggac ttctgtgaag aagaagaggc caaaatccgg cagagaattt
2941 ttagaccaac aaggaaacaa cgcaaagaag agagggcctc tctcggcttg gtcacaggct
3001 ctgaaatcag gaagagaaat ccagaagact tcaaacccaa gggaaagctg tgggctgatg
3061 atgacagaag cgttgactac aatgagaaac tcaacttcga ggccccacca agcatctggt
3121 cgcggatagt caactttggt tcaggctggg gcttctgggt ctcccctagt ctgtttataa
3181 catcaaccca tgtcataccc caaggtgcaa aagagttctt cggagttccc atcaagcaaa
3241 tccagataca caaatcaggt gaattctgcc ggttgagatt cccaaagcca atcagaactg
3301 atgtgacggg tatgattcta gaagaaggtg cgcccgaggg gaccgtggcc acactgctca
3361 tcaagagacc aactggagag ctcatgcctc tggcagccag aatggggacc catgcaacca
3421 tgaaaattca ggggcgcaca gttggagggc aaatgggtat gctcctgaca ggatccaacg
3481 ccaagagtat ggacctaggc acaacaccag gcgactgtgg ctgcccctac atctacaaga
3541 gggggaatga ctacgtggtc ataggagtcc atacggccgc tgcccgtgga ggaaacactg
3601 tcatatgtgc cacccagggg agtgagggag aagccacact tgaaggaggt gatagtaaag
3661 ggacatactg tggcgcacca atcttgggcc cagggagcgc tccgaagctc agtaccaaga
3721 ctaagttttg gagatcatcc acaacaccac tcccacctgg cacctacgaa ccagcctacc
3781 tcggtggcaa agaccctaga gtcaaaggtg gcccttcatt gcaacaagtt atgaggggcc
3841 agttgaagcc attcacagaa cccagaggca aaccaccgag accaaatgtg ttggaagctg
3901 ccaagaaaac catcatcaat gtccttgagc aaacaattga tccaccccaa aaatggtcat
3961 ttgcgcaagc ttgcgcatcc cttgataaaa ccacctccag cggccacccg caccatatgc
4021 ggaaaaacga ctgttggaat ggggagtcct tcacaggaaa attggctgat caagcctcca
4081 aggccaacct aatgtttgaa gagggaaaga acatgactcc agtctacaca ggtgcactta
4141 aagatgagtt ggtaaagacc gataaagttt atggtaaggt caagaagagg cttctgtggg
4201 gttcagatct ggcgaccatg atacggtgcg cccgagcttt tggaggcctc atggatgaac
4261 tcaaggcaca ctgtgtcaca cttcctgtca gagttggtat gaacatgaat gaggatggtc
4321 ccatcatctt tgagaagcac tccagatata gatatcacta tgatgctgat tattcccggt
4381 gggactcaac acaacaaagg gatgtgctag cagcggcgct agaaatcatg gttaagttct
4441 ctccagaacc acacctggcc cagatagttg cagaagacct tctttcccct agcgttatgg
4501 atgtaggtga ctttcaaata tcaataagtg agggtctccc ctctggggtt ccttgtacct
4561 cccagtggaa ttccatcgcc cactggctcc tcactctgtg tgcactctct gaagtcacgg
4621 acctgtcccc tgatattatt caggccaact cccttttctc cttctatggt gatgatgaga
4681 ttgtaagcac agacataaag ttggacccag agaaactgac agcaaaactc aaggagtacg
4741 ggctgaaacc aacccgcccc gacaaaactg aaggacccct tgttatctct gaagacctgg
4801 atggcctgac attcctccgg agaactgtga cccgtgatcc agctggctgg ttcggaaaat
4861 tggaacaaag ttcaattctc aggcaaatgt actggaccag gggtcccaac catgaagatc
4921 catttgaaac aatgatacca cactcccaaa gacccataca attgatgtcc ttgctgggcg
4981 aggctgcact ccacggcccg gcattctata gcaaaattag caagttagtc attgcagagt
5041 tgaaggaagg tggcatggat ttttacgtgc ccagacaaga gccaatgttc agatggatga
5101 gattctcaga tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg
5161 aagatggcgt cgagtgacgc caacccatct gatgggtccg cagccaacct cgtcccagag
5221 gtcaacaatg aggttatggc tctggagccc gttgttggtg ccgccattgc ggcacctgta
5281 gcgggccaac aaaatgtaat tgacccctgg attagaaata attttgtaca agcccctggt
5341 ggagagttta cagtgtcccc tagaaacgct ccaggtgaaa tactatggag cgcgcccttg
5401 ggccctgatc taaatcccta cctatcccat ttggccagaa tgtacaatgg ttatgcaggt
5461 ggttttgaag tgcaggtaat tctcgcgggg aatgcgttca ccgccgggaa ggttatattt
5521 gcagcagtcc caccaaattt tccaactgaa ggcttgagcc ccagccaggt cactatgttc
5581 ccccatatag tagtagatgt taggcaacta gaacctgtgt tgattccctt acccgatgtt
5641 aggaataatt tctatcatta caatcaatca aatgacccca ccattaagtt gatagcaatg
5701 ttgtatacac cacttagggc taataatgct ggggatgatg tcttcacagt ttcttgccga
5761 gttctcacga gaccatcccc cgattttgat ttcatatttc tagtgccacc cacagttgag
5821 tcaagaacta aaccattctc tgtcccagtt ttaactgttg aggagatgac caattcaaga
5881 ttccccattc ctttggaaaa gttgttcacg ggtcccagca gtgcctttgt tgtccaacca
5941 caaaacggta ggtgcacgac tgatggcgtg ctcctaggca ccacccagct gtcacctgtc
6001 aacatctgca ccttcagagg agatgtcacc catatcacag gtagtcgtaa ctacacaatg
6061 aatttggcct ctcaaaattg gaacaattat gacccaacag aagaaatccc agcccctcta
6121 gggactccag attttgtggg gaagattcaa ggcatgctca cccaaaccac aaggacggat
6181 ggctcaacac gcggccacaa agctacagtg tacactggga gcgccgattt tgctccaaaa
6241 ctgggtagag ttcaatttga aactgacaca gaccatgatt ttgaagctaa ccaaaacaca
6301 aagttcaccc cagttggtgt catccaagac ggtagcacca cccaccgaaa tgaaccccaa
6361 cagtgggtgc tcccaagtta ctcaggcaga aatactccta atgtgcatct ggcccccgct
6421 gtggccccca cttttccggg tgagcaactt ctcttcttca gatccaccat gcccggatgc
6481 agtgggtacc ccaacatgga tttggactgt ctgctccccc aggaatgggt gcagtacttc
6541 taccaagagg cagccccagc acaatctgat gtggctctgc taagatttgt gaatccagac
6601 acaggtaggg ttttgtttga gtgtaagctt cataaatcag gctatgttac agtggctcac
6661 actggccaac atgatttggt tatccccccc aatggttatt tcaggtttga ttcctgggtc
6721 aaccagtttt acacgcttgc ccccatggga aatggaacgg ggcgtagacg tgcactataa
6781 tggctggagc tttctttgct ggactggcat ctgatgtcct tggctctgga cttggttccc
6841 ttatcaatgc tggggctggg gccatcaacc aaaaagttga gtttgaaaat aacagaaaat
6901 tgcaacaagc atccttccaa tttagcagca atctacaaca ggcctccttt caacatgaca
6961 aagagatgct ccaagcacaa attgaggcca ccaaaaggct acaacaggaa atgatgaaag
7021 ttaagcaggc agtgctccta gagggtgggt tctctgagac agatgcagcc cgcggggcaa
7081 tcaacgcccc catgacaaaa gctttggact ggagcgggac aaggtactgg gctcccgatg
7141 ctaggactac aacatacaat gcaggccgct tttccacccc tcaaccatcg ggggcactgt
7201 caggaagagc taatcctagg gatgctgtcc ctgctcgggg tccttccagc aagtcttcca
7261 attcttctac tgctacttct gtgtactcaa atcaaactac ttcaacgaga cttggttcta
7321 cagctggttc tggtgccagt gtctcgagct tcccgtcaac tgcaaggact aggagctggg
7381 ttgaggatca aagtaggaat ttgtcacctt tcatgagggg ggcccacaac atatcgtttg
7441 tcaccccacc atctagcaga tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga
7501 ttttggactc ctggactggc gctttcaaca cgcgcaggca gccactcttc gctcacattc
7561 gtaagcgagg ggagtcacgg gcgtaa
//