Typing tool
|
Complete norovirus genomes
MZ546182 | GII.7 | ||
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GII.P7 |
ORF1: 5..5098 ORF2: 5079..6701 ORF3: 6701..7474LOCUS MZ546182 7543 bp RNA linear VRL 29-MAR-2022 DEFINITION Norovirus sp. strain Norozj-9, complete genome. ACCESSION MZ546182 VERSION MZ546182.1 KEYWORDS . SOURCE Norovirus sp. ORGANISM Norovirus sp. Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 (bases 1 to 7543) AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X., Shen,Q., Ji,L., Lu,H. and Zhang,W. TITLE Viral metagenomics reveals diverse viruses in the fecal samples of children with diarrhea JOURNAL Virol Sin 37 (1), 82-93 (2022) PUBMED 35234620 REFERENCE 2 (bases 1 to 7543) AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H. TITLE Direct Submission JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University, 301, Xuefu Road, Zhenjiang, Jiangsu 212013, China COMMENT ##Assembly-Data-START## Assembly Method :: geneious v. 11.1.2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7543 /organism="Norovirus sp." /mol_type="genomic RNA" /strain="Norozj-9" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:1938392" /country="China" /collection_date="2016" CDS 5..5098 /codon_start=1 /product="nonstructural protein" /protein_id="QZA75117.1" /translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK MLGTVPKGTKAPSSVQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFQLQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAI LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVKPTETQEANESEK EVAQSRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG SDIRRRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGVKELFGVEIKQTQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" CDS 5079..6701 /codon_start=1 /product="VP1" /protein_id="QZA75118.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKIIFSAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF GVASQRNKNEQNPATRAHEANVNTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ" CDS 6701..7474 /codon_start=1 /product="VP2" /protein_id="QZA75119.1" /translation="MASAFLANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPVTKLVDWSG TRYWAPGAMRTTGYSGTFAHLPPVQSASYVNNQNRQLLKVDPSPPSSSGSSVSSVKTQ STTLSGTSRVGSSSQSTLSTRSSTRTSDWVRSQNERLSPFMDGALQTVYVTPPSSRAS NVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa 61 tgacagtaat aacgccaccc cttctaacaa agaagaggtc ggtgcattct ccaacatcaa 121 agttggattt aagaaaatgc tgggtaccgt acccaagggt accaaagcgc ccagcagtgt 181 ccaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc 241 aaatggtgaa gacactgtac agttcgatgc aaagtcagaa acaataattg ggttgccaga 301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cactaagtga 361 gagggagcac agaccggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg 421 tgagttttac cattactccg tgtacgttag cgacggcaaa gctctggggg tccacaaacc 481 accggcagct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc 541 cgtttataca cccaattact tggtctcccc ggacacatta aagggtcttg ctggtgagaa 601 gttcccctac acggccttca gtaacaactg ttacaacttc tgttgttggg tgctagagct 661 caacgacacg tggcttaaca gaagatgcat ttccagaacc accggcttct ttaaaccata 721 tcagtcttgg aacaggaaac ctctcccaac cgttgatgat ggaaagatca aaaaggtggc 781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg 841 caaactcaag ccattgaacc tactgcactt gctcgcgtct tgtgattgga cgtttgcggg 901 tatagtggag acagtcatct tgatggcaga gctttttaat gtcttctgga ccccgccaga 961 tgtttctaat tttatagcct ccctaatagg tgattttcaa ttgcaagggc ctgaggacct 1021 ggctgtggag ctcgtccccg tggtcatggg tggcataggg atggttctcg gtttcaccgc 1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct 1141 agggaattat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaagga 1201 agagaaagct gagatggaaa ccttgagggc aattgaagat gccgtcctgg atatggaagc 1261 catagggaat aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat 1321 gaagaccctg gatctggagg aggagaaggc gaggaaactg tccactaaat catcttcgcc 1381 ggacatagtc ggcaccatca atgccatact ggctaggata gctgctgcta gatcccttct 1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtga tgatctcagg 1501 cagacctggc attggaaaga cccacatggc gagacatttg gccaagagca tcgccaacac 1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggtgtcgatc actgggacgc 1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ccgtcaaaga 1681 cgccctaaca ctacaagagc tggccgatac atgtccagtc actttaaatt gtgataggat 1741 tgaaaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa 1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagggttg acttcctggt 1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat 1921 gtggaaagac cattttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg 1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccctaaccca 2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg aattccagct 2101 ccaaggtaat gacctccaaa catacaactt tgacaccaac agggtctccg cattcaggaa 2161 attggccgca gataacaaat atgggatcat ggagacgatg agagtgggtg cggcactcaa 2221 gaacgtgaag accctggaag atcttaaaat tgcgttgagg gatgtaaaat tcaatgagtg 2281 tgaaataatt tacaagaact ctaagtatcg tgtctcttcc aacggtaagg gttcagtttc 2341 tgttgataaa gttgaggaca atgcatccca gactgtgaac gaggtgcaat cagcaattct 2401 caggctcagg caagcgaggg ccagatatta catcagctgt ttccaagacc tcgtttacac 2461 tctcatacag gttgccggag catcattcgt tgtcaacagg atctccagaa ggttctgctg 2521 ggaaaggtgg gtcaaaccga ccgagaccca ggaggcgaat gagtccgaaa aggaagtggc 2581 acaaagcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggcaagaa 2641 caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga 2701 gtatgacgag tacaagagaa tcagggagga aaggaacgga aagtactcca ttgaggaata 2761 tctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcaa cggaggagga 2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca 2881 gaggaaggag gaaaggggtg tacttggctt agtcaccggc tcagacatca gaaggaggag 2941 accagatgac ttccaaccaa aaggcaacct atgggcagac gataccagga gtgtggatta 3001 caatgagagg cttgactttg aagcgcctcc gagtgtctgg tcaagaatag tcccattagg 3061 cactggttgg ggattctggg tttcatccaa tcttctgatc acaacaacac acgtcctgcc 3121 taaaggagtt aaggagctct ttggagttga aatcaaacaa acccaagttc acaagtctgg 3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact 3241 ggaggagggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga 3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac 3361 tgttggtggc cagatgggaa tgcttctcac aggagcaaac gcgaagaaca tggacctcgg 3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgtggcaacg acattgttgt 3481 cgcgggtgtt cacaccgcag cagcccgggg aggcaacact gttatatgcg ccactcaagg 3541 gcaggatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc 3601 aattctgggc cctggtaagg cacctaagct cagcacgaag accaagtttt ggcgctcatc 3661 accagatgcc ctgccacctg gcacatatga acctgcttac ctaggaggca aagaccctag 3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga 3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa 3841 tgttctagaa caaaccattg accctgccaa gccatggtcc tattcgcagg catgtgcctc 3901 actggacaaa accacctcta gtggtagtcc ccatcatgtt aagaaaaatg accactggaa 3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga 4021 gcaggctaaa catgtgcagc ccgtgtatac ggccgcgctc aaagatgagc ttgttaagac 4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat 4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc 4201 tcttccttgc agggtgggaa tgaacatgaa cgaggatggc cccattatat ttgacaaaca 4261 ttctaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccaacaaag 4321 gagcattctt tctgctgcta tggaagtgat ggtgcggttc tctgctgaac cagaattggc 4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat 4441 ttcagtccag gagggtctgc cgtcaggagt cccatgcaca tcacaatgga attcaatagc 4501 acactggatc ctaactctga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt 4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagta ctgatatcaa 4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggtctggtcc ccacccggcc 4681 tgacaaaact gaaggtcccc tcgtcataac tgaagacctc actggcctta cgttcctccg 4741 taggtcgatt gcccgggacc cagctggttg gtttggaaag ctggaccagg actcaatcct 4801 taggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggttcc 4861 tcattcccaa cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc 4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga 4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac 5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg 5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc 5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa 5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc 5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt gggaccagag ctgaacccct 5341 atctcgctca tctggcccgt atgtataatg ggcacgctgg tggcatggaa gtgcaaattg 5401 tgttggctgg gaacgcgttc acagctggca agatcatatt ttctgccatc cctccagggt 5461 tcccatatga aaatttgtca ccttcacaaa tcacaatgtg ccctcatgtc ataattgatg 5521 tcagacaatt agaaccagtt ttattaccta tgccagatat tagaaataat ttcttccatt 5581 acaatcaggg caatgaccca aagttgagat tggtagctat gctctatacc cctttaaggg 5641 ctaataattc tggtgatgat gtgttcacgg tttcttgtag ggtcctcacc aaaccgtcac 5701 ctgattttga attcacattt ttggtccccc ctacggttga atctaagacc aaacagttca 5761 cattacccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa 5821 tgatgtacac agccaggaat gaaaaccaag ttgtccagcc acagaatggt agggttacac 5881 ttgatggcga gctattaggc accacaccct tgttggctgt caacatctgc aaatttaagg 5941 gggaggttat agccaagaat ggagatgtga gatcctatag gatggacatg gaaattacca 6001 acactgatgg taccccaatt gaccccactg aagacacacc tggtcccatt ggttcacctg 6061 atttccaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg 6121 ccacgagagc ccatgaagcc aacgttaaca ctggtgggga ccaatatgcc cccaaattgg 6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca 6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat 6301 acggtgggca tctcaccaac aacactcact tagctccagc agtggccccc ctatttccag 6361 gtgagcagat tctattcttt agatcacaaa tacccagctc gggcggccat gaattgggtt 6421 acatggactg ccttgtccca caagaatggg tccaacactt ctaccaagaa gctgccacag 6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg 6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca tactggcgat aacccaattg 6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg 6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttccttgc 6721 aaatttggca ggaggcgttg cctccaatgg aattagttca ctcataaatg ctggggctaa 6781 tgctattaac caaaaggttg agtttgatta caataaacaa cttcagaatg catccttctc 6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctgc aacaagagat 6901 gattgacata aagcaagggg tgctgacagc tgcgggattt tctcctacag atgccgcgag 6961 gggctctgtc ggcgcgccag tgacaaaatt agttgattgg agtggcacta gatattgggc 7021 gcctggtgcc atgaggacaa caggctattc agggactttt gctcacttgc cccccgtgca 7081 gtctgcttca tatgttaata atcaaaatag acaacttctt aaagtagatc cttctcctcc 7141 ttcttcgagt ggttcttctg tttcttctgt taaaacacaa tcaactaccc tctcaggcac 7201 ttcaagggtg ggctcttcat ctcagtcaac cctgtcgacc aggtcgagca caaggacatc 7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac 7321 agtgtatgta acgccaccat ccagtagggc atcaaatgtc agcacagtct cgaccgtgcc 7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc 7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag gaaagttgat 7501 tagtttgttc ttcctttcta ctattccttt aattctttct ttt //