Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546182 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS MZ546182 7543 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-9, complete genome.
ACCESSION MZ546182
VERSION MZ546182.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7543)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7543)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7543
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-9"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/geo_loc_name="China"
/collection_date="2016"
CDS 5..5098
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75117.1"
/translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGTVPKGTKAPSSVQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFQLQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAI
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVKPTETQEANESEK
EVAQSRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRRRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQTQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5079..6701
/codon_start=1
/product="VP1"
/protein_id="QZA75118.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFSAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANVNTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
CDS 6701..7474
/codon_start=1
/product="VP2"
/protein_id="QZA75119.1"
/translation="MASAFLANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPVTKLVDWSG
TRYWAPGAMRTTGYSGTFAHLPPVQSASYVNNQNRQLLKVDPSPPSSSGSSVSSVKTQ
STTLSGTSRVGSSSQSTLSTRSSTRTSDWVRSQNERLSPFMDGALQTVYVTPPSSRAS
NVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtaat aacgccaccc cttctaacaa agaagaggtc ggtgcattct ccaacatcaa
121 agttggattt aagaaaatgc tgggtaccgt acccaagggt accaaagcgc ccagcagtgt
181 ccaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc
241 aaatggtgaa gacactgtac agttcgatgc aaagtcagaa acaataattg ggttgccaga
301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cactaagtga
361 gagggagcac agaccggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
421 tgagttttac cattactccg tgtacgttag cgacggcaaa gctctggggg tccacaaacc
481 accggcagct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc
541 cgtttataca cccaattact tggtctcccc ggacacatta aagggtcttg ctggtgagaa
601 gttcccctac acggccttca gtaacaactg ttacaacttc tgttgttggg tgctagagct
661 caacgacacg tggcttaaca gaagatgcat ttccagaacc accggcttct ttaaaccata
721 tcagtcttgg aacaggaaac ctctcccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg
841 caaactcaag ccattgaacc tactgcactt gctcgcgtct tgtgattgga cgtttgcggg
901 tatagtggag acagtcatct tgatggcaga gctttttaat gtcttctgga ccccgccaga
961 tgtttctaat tttatagcct ccctaatagg tgattttcaa ttgcaagggc ctgaggacct
1021 ggctgtggag ctcgtccccg tggtcatggg tggcataggg atggttctcg gtttcaccgc
1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct
1141 agggaattat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaagga
1201 agagaaagct gagatggaaa ccttgagggc aattgaagat gccgtcctgg atatggaagc
1261 catagggaat aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat
1321 gaagaccctg gatctggagg aggagaaggc gaggaaactg tccactaaat catcttcgcc
1381 ggacatagtc ggcaccatca atgccatact ggctaggata gctgctgcta gatcccttct
1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtga tgatctcagg
1501 cagacctggc attggaaaga cccacatggc gagacatttg gccaagagca tcgccaacac
1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggtgtcgatc actgggacgc
1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ccgtcaaaga
1681 cgccctaaca ctacaagagc tggccgatac atgtccagtc actttaaatt gtgataggat
1741 tgaaaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagggttg acttcctggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
1921 gtggaaagac cattttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccctaaccca
2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg aattccagct
2101 ccaaggtaat gacctccaaa catacaactt tgacaccaac agggtctccg cattcaggaa
2161 attggccgca gataacaaat atgggatcat ggagacgatg agagtgggtg cggcactcaa
2221 gaacgtgaag accctggaag atcttaaaat tgcgttgagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaagaact ctaagtatcg tgtctcttcc aacggtaagg gttcagtttc
2341 tgttgataaa gttgaggaca atgcatccca gactgtgaac gaggtgcaat cagcaattct
2401 caggctcagg caagcgaggg ccagatatta catcagctgt ttccaagacc tcgtttacac
2461 tctcatacag gttgccggag catcattcgt tgtcaacagg atctccagaa ggttctgctg
2521 ggaaaggtgg gtcaaaccga ccgagaccca ggaggcgaat gagtccgaaa aggaagtggc
2581 acaaagcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggcaagaa
2641 caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag tacaagagaa tcagggagga aaggaacgga aagtactcca ttgaggaata
2761 tctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcaa cggaggagga
2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca
2881 gaggaaggag gaaaggggtg tacttggctt agtcaccggc tcagacatca gaaggaggag
2941 accagatgac ttccaaccaa aaggcaacct atgggcagac gataccagga gtgtggatta
3001 caatgagagg cttgactttg aagcgcctcc gagtgtctgg tcaagaatag tcccattagg
3061 cactggttgg ggattctggg tttcatccaa tcttctgatc acaacaacac acgtcctgcc
3121 taaaggagtt aaggagctct ttggagttga aatcaaacaa acccaagttc acaagtctgg
3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact
3241 ggaggagggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga
3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac
3361 tgttggtggc cagatgggaa tgcttctcac aggagcaaac gcgaagaaca tggacctcgg
3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgtggcaacg acattgttgt
3481 cgcgggtgtt cacaccgcag cagcccgggg aggcaacact gttatatgcg ccactcaagg
3541 gcaggatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc
3601 aattctgggc cctggtaagg cacctaagct cagcacgaag accaagtttt ggcgctcatc
3661 accagatgcc ctgccacctg gcacatatga acctgcttac ctaggaggca aagaccctag
3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga
3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa
3841 tgttctagaa caaaccattg accctgccaa gccatggtcc tattcgcagg catgtgcctc
3901 actggacaaa accacctcta gtggtagtcc ccatcatgtt aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga
4021 gcaggctaaa catgtgcagc ccgtgtatac ggccgcgctc aaagatgagc ttgttaagac
4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtgggaa tgaacatgaa cgaggatggc cccattatat ttgacaaaca
4261 ttctaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccaacaaag
4321 gagcattctt tctgctgcta tggaagtgat ggtgcggttc tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat
4441 ttcagtccag gagggtctgc cgtcaggagt cccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctaactctga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagta ctgatatcaa
4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggtctggtcc ccacccggcc
4681 tgacaaaact gaaggtcccc tcgtcataac tgaagacctc actggcctta cgttcctccg
4741 taggtcgatt gcccgggacc cagctggttg gtttggaaag ctggaccagg actcaatcct
4801 taggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggttcc
4861 tcattcccaa cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc
5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt gggaccagag ctgaacccct
5341 atctcgctca tctggcccgt atgtataatg ggcacgctgg tggcatggaa gtgcaaattg
5401 tgttggctgg gaacgcgttc acagctggca agatcatatt ttctgccatc cctccagggt
5461 tcccatatga aaatttgtca ccttcacaaa tcacaatgtg ccctcatgtc ataattgatg
5521 tcagacaatt agaaccagtt ttattaccta tgccagatat tagaaataat ttcttccatt
5581 acaatcaggg caatgaccca aagttgagat tggtagctat gctctatacc cctttaaggg
5641 ctaataattc tggtgatgat gtgttcacgg tttcttgtag ggtcctcacc aaaccgtcac
5701 ctgattttga attcacattt ttggtccccc ctacggttga atctaagacc aaacagttca
5761 cattacccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa
5821 tgatgtacac agccaggaat gaaaaccaag ttgtccagcc acagaatggt agggttacac
5881 ttgatggcga gctattaggc accacaccct tgttggctgt caacatctgc aaatttaagg
5941 gggaggttat agccaagaat ggagatgtga gatcctatag gatggacatg gaaattacca
6001 acactgatgg taccccaatt gaccccactg aagacacacc tggtcccatt ggttcacctg
6061 atttccaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg
6121 ccacgagagc ccatgaagcc aacgttaaca ctggtgggga ccaatatgcc cccaaattgg
6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca
6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat
6301 acggtgggca tctcaccaac aacactcact tagctccagc agtggccccc ctatttccag
6361 gtgagcagat tctattcttt agatcacaaa tacccagctc gggcggccat gaattgggtt
6421 acatggactg ccttgtccca caagaatggg tccaacactt ctaccaagaa gctgccacag
6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg
6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca tactggcgat aacccaattg
6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg
6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttccttgc
6721 aaatttggca ggaggcgttg cctccaatgg aattagttca ctcataaatg ctggggctaa
6781 tgctattaac caaaaggttg agtttgatta caataaacaa cttcagaatg catccttctc
6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctgc aacaagagat
6901 gattgacata aagcaagggg tgctgacagc tgcgggattt tctcctacag atgccgcgag
6961 gggctctgtc ggcgcgccag tgacaaaatt agttgattgg agtggcacta gatattgggc
7021 gcctggtgcc atgaggacaa caggctattc agggactttt gctcacttgc cccccgtgca
7081 gtctgcttca tatgttaata atcaaaatag acaacttctt aaagtagatc cttctcctcc
7141 ttcttcgagt ggttcttctg tttcttctgt taaaacacaa tcaactaccc tctcaggcac
7201 ttcaagggtg ggctcttcat ctcagtcaac cctgtcgacc aggtcgagca caaggacatc
7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac
7321 agtgtatgta acgccaccat ccagtagggc atcaaatgtc agcacagtct cgaccgtgcc
7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc
7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag gaaagttgat
7501 tagtttgttc ttcctttcta ctattccttt aattctttct ttt
//