Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546181 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 29..5035
ORF2: 5016..6638
ORF3: 6638..7444
LOCUS MZ546181 7444 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-8, complete genome.
ACCESSION MZ546181
VERSION MZ546181.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7444)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7444)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7444
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-8"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 29..5035
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75114.1"
/translation="MAVTFKRALGARPKQPPPKEIPPRPPRPPTPELVKKIPPPPPNG
EDELVVSYSAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRDAKEPLTGTIIEMW
DGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFWRPVYTPQYLISPDTLRRL
HGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDS
KLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDWTFAGIVESLILLAELF
GVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGLVLGFTKEKIGKMLSSA
ASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDLEAIENNHMTT
LLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAKEE
LSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRNGVDHWDAYKGE
RVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPA
PLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAPQG
GFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPALTTFNFDRNKILAF
RQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKCQIVYNGGTYTLEADGK
GSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRI
AKRMNIQNLWSKPQVEDTEETANKDGCLKPKDDEEFVVSSDDIKTEGKKGKNKSGRGK
KHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVAIARATEEDFCEE
EEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKLWADDDRSVDYNE
KLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGVPIKQIQIHKSG
EFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTHATMKIQG
RTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVIC
ATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYL
GGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTIDPPQKW
SFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYT
GALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPVRVGMN
MNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAED
LLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANS
LFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRT
VTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGP
AFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE
"
CDS 5016..6638
/codon_start=1
/product="VP1"
/protein_id="QZA75115.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKPGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6638..7444
/codon_start=1
/product="VP2"
/protein_id="QZA75116.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKPS
NSSTVTSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRNWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atcttcaagt gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc
61 gcggcctaaa cagccgcccc cgaaggaaat accacccaga cccccgcgac cacccacacc
121 agaattggtc aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtctc
181 ttacagcgcc aaagatggcg tttccggact gcctgagctc accactgtca gacaaccgga
241 agaaaccaac acggcgttta gtgtcccccc actcaaccaa agggagagca gggacgccaa
301 ggagccacta actggaacaa tcattgaaat gtgggatgga gaaatctacc attacggcct
361 gtacgtggaa cgaggtctta tacttggtgt gcataagcca ccggcagcca ttagccttgc
421 caaggtcgag ctagcaccgc tctctttgtt ctggagacct gtatacaccc cccagtatct
481 catctctcca gacactctta ggagattaca tggagagtca ttcccctaca ctgcatttga
541 taataattgc tacgcctttt gttgttgggt gttagacctg aacgactcat ggctaagcag
601 gagaatgatt cagagaacaa caggcttctt taggccgtac caggattgga acaggaaacc
661 cctccccact atggatgatt ccaaattaaa gaaggtagcc aacatattct tgtgcacttt
721 gtcttcacta ttcaccaggc ccattaagga cataataggg aagttgaaac ctcttaacat
781 ccttaacatt ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact
841 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc
901 cttgctaggt gattatgaac tgcaaggacc tgaggacctt gcagtggaac tggtcccaat
961 agtgatgggg gggataggtt tggtgctagg atttaccaaa gagaaaatcg gaaagatgct
1021 atcatccgct gcatccactt taagagcttg taaagacctt ggtgcatacg gactggaaat
1081 cttaaaattg gtcatgaaat ggttcttccc aaagaaagag gaagcaaatg aactggctat
1141 ggtgagatcc atcgaggatg cagtgctaga cctcgaggca attgaaaaca accacatgac
1201 taccctactc aaagacaaag acagcttggc aacctacatg agaacccttg accttgagga
1261 ggagaaagcc agaaagctct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa
1321 ctctcttctg gcaagaatcg ctgctgcacg ttccctagtg catcgggcga aagaagagct
1381 ctccagcagg ccgagacctg tcgttgtgat gatatcggga agaccaggga tagggaagac
1441 tcaccttgcc agggagttgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt
1501 gggtcttatc ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagagttgt
1561 cctgtgggac gactatggaa tgagcaaccc catccatgat gccctcaggt tgcaggagct
1621 tgctgacact tgccccctca cgctaaattg tgacagaatt gagaacaaag gaaaggtctt
1681 tgacagtgat gccataatta tcaccaccaa tctggccaac ccagcaccac tggattatgt
1741 caactttgaa gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt
1801 ggagaaggca aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc
1861 tgacttctca cacataaaac tgtcattggc tccacagggt ggttttgaca agaacggcaa
1921 caccccgcat ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc
1981 atcagggtta ctccatgaga ggctagatga atatgaactg caaggcccag ccctcaccac
2041 tttcaacttt gaccgcaaca agatacttgc ttttagacag cttgctgctg aaaacaagta
2101 tgggctgatg gacacaatga gagttggaaa acagctcaag gatgtcaaga ccatgtcaga
2161 cctcaaacaa gcactcaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg
2221 cacctacaca cttgaggctg atggcaaggg tagtgtgaaa gttgacaaag tgcaaagtgc
2281 cactgtgcag accaacaatg aactagccgg tgccctacac cacctgaggt gcgctagaat
2341 cagatactat gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc
2401 tgcattcgtc accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc
2461 acaggtggaa gacacagaag agacggccaa caaagatggt tgcctaaagc ccaaagatga
2521 tgaagagttt gtcgtctcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa
2581 gtccggccgt ggcaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta
2641 cgatgagtac aagagaatca gagaagaaag aaatggtaag tactccatag aagagtacct
2701 tcaggacaga gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt
2761 ctgtgaagaa gaagaggcca aaatccggca gagaattttc agaccaacaa ggaaacaacg
2821 taaagaagag agggcctctc tcggcttggt cacaggctct gaaatcagga agagaaaccc
2881 agaagacttc aaacccaagg gaaagctgtg ggctgatgat gacagaagtg tagactacaa
2941 tgagaaactc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc
3001 aggctggggc ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca
3061 aggtgcaaaa gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga
3121 attctgccgg ttgagattcc caaagccaat cagaactgat gtgacgggca tgattctaga
3181 agaaggtgcg cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct
3241 catgcctctg gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt
3301 tggagggcaa atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac
3361 aacaccaggt gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat
3421 aggggtccat acggccgctg cccgtggagg gaacactgtc atatgtgcca cccaggggag
3481 tgagggggaa gccacacttg aaggaggtga cagcaaaggg acatactgtg gcgcaccaat
3541 cttgggccca gggagcgctc cgaagctcag taccaagact aagttttgga gatcatccac
3601 aacaccactc ccgcctggca cttacgaacc agcctacctc ggtggcaaag accctagagt
3661 caaaggtggc ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc
3721 cagaggcaaa ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt
3781 ccttgagcaa acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct
3841 tgacaaaacc acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaatgg
3901 ggagtccttc acaggaaaat tggctgatca agcctccaag gccaacctaa tgtttgaaga
3961 gggaaagaac atgactccag tctacacagg tgcacttaaa gatgagttgg tgaagaccga
4021 taaagtttat ggtaaggtca agaagaggct tctgtggggt tcagatctgg cgaccatgat
4081 acggtgcgcc cgagcttttg ggggccttat ggatgaactc aaggcacact gtgtcacact
4141 tcctgtcaga gttggtatga acatgaatga ggatggcccc atcatctttg agaagcactc
4201 cagatataga taccactatg atgctgatta ttcccggtgg gactcaacac aacaaaggga
4261 tgtgctagca gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca
4321 gatagttgca gaagacctcc tttcccctag cgtgatggat gtaggtgact ttcaaatatc
4381 aataagtgag ggtctcccct ctggggtacc ttgtacctcc cagtggaatt ccatcgccca
4441 ctggctcctc actctgtgcg cactctctga agtcacggac ctgtcccctg atatcattca
4501 ggccaactcc ctcttttcct tctatggtga tgatgagatt gtaagcacag acataaagtt
4561 ggacccagag aagctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga
4621 caaaactgaa ggaccccttg ttatctctga agacctggat ggcctgacat tcctccggag
4681 aactgtgacc cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattctcag
4741 acaaatgtac tggaccagag gtcccaacca tgaagatcca tttgaaacaa tgataccaca
4801 ctcccaaaga cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc
4861 attctatagc aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggactt
4921 ttacgtaccc agacaagagc caatgttcag atggatgaga ttctcggatc tgagcacgtg
4981 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca
5041 acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc
5101 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5161 acccctggat tagaaataat tttgtacaag cccctggtgg agagtttaca gtatccccta
5221 gaaacgctcc aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctacc
5281 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5341 tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc
5401 caaccgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta
5461 ggcaattaga acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca
5521 atcaatcaaa tgatcccacc attaagttga tagcaatgtt gtacacacca cttagggcta
5581 ataatgctgg ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg
5641 actttgattt catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg
5701 tcccagtttt aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt
5761 tgttcacggg tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg
5821 acggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag
5881 atgtcaccca tatcacaggt agtcgtaact acacaatgaa tttggcttct caaaattgga
5941 gcaattatga cccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga
6001 agattcaagg catgctcacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag
6061 ccacagtgta cactgggagc gccgactttg ctccaaaacc gggtagagtt caatttgaaa
6121 ctgacacaga ccatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca
6181 tccaagatgg tagcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact
6241 caggcagaaa tactcctaat gtgcatctgg cccccgctgt agcccccact tttccgggtg
6301 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6361 tggactgtct gcttccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac
6421 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6481 gtaagcttca taaatcaggc tatgtcacag tggctcacac tggccaacat gatttggtta
6541 tcccccccaa tggttatttt aggtttgatt cctgggttaa ccagttttac acgcttgccc
6601 ccatgggaaa tggaacgggg cgtagacgtg cactataatg gctggagctt tctttgctgg
6661 attggcatct gatgtccttg gctctgggct tggttccctt atcaatgctg gggctggggc
6721 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6781 tagcagtaat ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat
6841 tgaggccacc aaaaggctac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga
6901 gggtgggttc tctgagacag atgcggcccg cggggcaatc aacgccccca tgacaaaagc
6961 tttggactgg agcgggacaa ggtactgggc tcccgatgct aggactacaa catacaatgc
7021 aggccgcttt tccacccctc agccatcggg ggcactgcca ggaagagcta atcttaggga
7081 tgctgtccct gcccggggtt cctccagtaa gccttccaat tcttccactg ttacttctgt
7141 gtactcaaat caaactactt caacgagact tggttctaca gctggttctg gtaccagtgt
7201 ctcgagcttc ccgtcaactg caaggactag gaactgggtt gaggatcaaa gtaggaattt
7261 gtcacctttc atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc
7321 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc
7381 tttcaacacg cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc
7441 gtaa
//