Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546180 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 190..5283
ORF2: 5264..6886
ORF3: 6886..7692
LOCUS MZ546180 7704 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-7, complete genome.
ACCESSION MZ546180
VERSION MZ546180.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7704)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7704)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7704
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-7"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 190..5283
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75111.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5264..6886
/codon_start=1
/product="VP1"
/protein_id="QZA75112.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6886..7692
/codon_start=1
/product="VP2"
/protein_id="QZA75113.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQVMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKPS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRNWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tggcgctgta agagaccacc agttcatcct ccccgttggg tgggggagga gggatctttt
61 tgaccaattc tggtgtgggt ggtcgcgggg gtctgggtgg tatttccttc gggggcggct
121 gtttaggccg cgccccgagg gcccgcttaa aagtgacagc catgttagaa aacacaccgt
181 cacttgaaga tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac
241 atcgcaaaat cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc
301 ctcggggcgc ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca
361 cccacaccag aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaactg
421 gtggtctctt acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga
481 caaccggaag aaaccaacac ggcgtttagt gtccccccac tcaaccaaag ggagagcagg
541 gacgccaagg agccactaac tggaacaatc attgaaatgt gggatggaga aatctaccat
601 tacggcctgt acgtggaacg aggtcttata cttggtgtgc ataagccacc ggcagccatt
661 agccttgcca aggtcgagct agcaccgctc tctttgttct ggagacctgt atacaccccc
721 cagtatctca tctctccaga cactcttagg agattacatg gagagtcatt cccctacact
781 gcatttgata acaattgcta cgccttttgt tgttgggtat tagacctgaa cgactcatgg
841 ctaagcagga gaatgattca gagaacaaca ggcttcttta ggccgtacca ggattggaac
901 agaaaacccc tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg
961 tgcactttgt cttcactatt caccaggccc attaaggaca taatagggaa gttgaaacct
1021 cttaacatcc ttaacattct ggctacatgt gattggacct tcgcaggcat agtggaatcc
1081 ttaatactct tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg
1141 atcgccccct tgctaggtga ttatgaactg caaggacctg aggaccttgc agtggaactg
1201 gtcccaatag tgatgggggg gataggtttg gtgctgggat ttaccaaaga gaaaatcgga
1261 aagatgctat catccgctgc atccacttta agagcttgta aagaccttgg tgcatacgga
1321 ctggaaatct taaaattggt catgaaatgg ttcttcccaa agaaagagga agcaaatgaa
1381 ctggctatgg tgagatccat cgaggatgca gtgctagacc tcgaggcaat tgaaaacaac
1441 cacatgacta ccctactcaa agacaaagac agcttggcaa cctacatgag aacccttgac
1501 cttgaggagg agaaagccag aaagctctca accaaatctg cttcacccga tattgtgggc
1561 acaatcaact ctcttctggc aagaatcgct gctgcacgtt ccctagtgca tcgggcgaaa
1621 gaagagctct ccagcaggcc gagacctgtc gttgtgatga tatcgggaag accagggata
1681 gggaaaactc accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac
1741 cagcgtgtgg gtcttatccc acgcaatggt gtcgaccact gggacgcata caagggcgaa
1801 agagttgtcc tatgggacga ctatggaatg agcaacccca tccatgatgc cctcaggttg
1861 caggagcttg ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaagga
1921 aaggtctttg acagtgatgc cataattatc accaccaatc tggccaaccc agcaccactg
1981 gattatgtca actttgaagc gtgctcgaga cgcattgatt tcctcgtgta cgcagaagcc
2041 cctgaggtgg agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct
2101 ttcagtcctg acttctcaca cataaaactt acattggctc cacagggtgg ttttgacaag
2161 aacggcaaca ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc
2221 gcccgagcat cagggttact ccatgagagg ctagatgaat atgagctgca aggcccagcc
2281 ctcaccactt tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa
2341 aacaagtatg ggctgatgga cacaatgaga gttggaaaac agctcaagga tgtcaagacc
2401 atgtcagacc tcaaacaagc actcaagaac atcgcgatca agaagtgcca gatagtgtac
2461 aatggtggca cctacacact tgaggctgat ggcaagggta gtgtgaaagt tgacaaagtg
2521 caaagtgcca ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctgaggtgc
2581 gctagaatca gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc
2641 gctggggccg cattcgtcac tacgcgcatc gctaagcgca tgaatataca gaatctctgg
2701 tccaagccac aggtggaaga cacagaagag acggccaaca aagatggttg cctaaagccc
2761 aaagatgatg aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg
2821 aagaacaagt ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat
2881 gaggagtacg atgagtacaa gagaatcaga gaagaaagaa atggtaagta ctccatagaa
2941 gagtaccttc aggatagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa
3001 gaggacttct gtgaagaaga agaggccaaa atccggcaga gaattttcag accaacaagg
3061 aaacaacgta aggaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag
3121 agaaacccag aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt
3181 gactacaatg agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac
3241 tttggttcag gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc
3301 ataccccaag gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaag
3361 tcaggtgaat tctgccggtt gagattccca aagccaatca gaactgatgt gacgggcatg
3421 attctagaag aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact
3481 ggagagctca tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg
3541 cgcacagttg gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac
3601 ctaggcacaa caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac
3661 gtggtcatag gggtccatac ggccgctgcc cgtggaggga acactgtcat atgtgccacc
3721 caggggagtg agggagaagc cacacttgaa ggaggtgaca gcaaagggac atactgtggc
3781 gcaccaatct tgggcccagg gagcgctccg aagctcagta ccaagactaa gttttggaga
3841 tcatccacaa caccactccc gcctggcacc tacgaaccag cctacctcgg tggcaaagac
3901 cctagagtca aaggtggccc ttcactgcaa caagttatga gggaccagct gaagccattc
3961 acagaaccca gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc
4021 atcaacgtcc ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc
4081 gcatcccttg acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgactgt
4141 tggaatgggg agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg
4201 tttgaagagg gaaagaacat gactccagtc tacacaggtg cacttaaaga tgagttggtg
4261 aagaccgata aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg
4321 accatgatac ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcacactgt
4381 gtcacacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag
4441 aagcactcca gatatagata ccactatgat gctgattatt cccggtggga ctcaacacaa
4501 caaagggatg tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac
4561 ctggcccaga tagttgcaga agacctcctt tcccctagcg tgatggatgt aggtgacttt
4621 caaatatcaa taagtgaggg tctcccctct ggggtacctt gtacctccca gtggaattcc
4681 atcgcccact ggctcctcac tctgtgcgca ctctctgaag tcacggacct gtcccctgat
4741 atcattcagg ccaactccct cttctccttc tatggtgatg atgagattgt aagcacagac
4801 ataaagttgg acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc
4861 cgccccgaca aaactgaagg accccttgtt atctctgaag acctggatgg cctgacattc
4921 ctccggagaa ctgtgacccg tgatccagct ggctggtttg gaaaattaga acaaagttca
4981 attctcaggc aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg
5041 ataccacact cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac
5101 ggcccggcat tctatagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc
5161 atggactttt acgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5221 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
5281 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
5341 tatggctctg gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa
5401 tgtaattgac ccctggatta gaaataactt tgtacaagcc cctggtggag agtttacagt
5461 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa
5521 tccctaccta tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca
5581 ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc
5641 aaattttcca actgaaggcc tgagccccag ccaggtcact atgttccccc atatagtagt
5701 agatgttagg caattagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta
5761 tcattacaat caatcaaatg accccaccat taagttgata gcaatgttgt acacaccact
5821 tagggctaat aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgagacc
5881 atcccccgat tttgatttca tatttctagt gccacccaca gttgagtcaa gaactaaacc
5941 attctctgtc ccagttttaa cagttgagga gatgaccaat tcaagattcc ccattccttt
6001 ggaaaagttg ttcacgggtc ctagcagtgc ctttgttgtc caaccacaaa acggtaggtg
6061 cacgactgac ggcgtgctcc taggcaccac ccaactgtct cccgtcaaca tctgcacctt
6121 cagaggagat gtcacccata tcacaggtag tcgtaactac acaatgaatt tggcttctca
6181 aaattggagc aattatgacc caacagaaga aataccagcc cctctaggaa ctccagattt
6241 tgtggggaag attcaaggca tgctcaccca aaccacaagg acagatggct caacacgcgg
6301 ccacaaagcc acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca
6361 atttgaaact gacacagacc atgattttga agctaaccaa aacacaaagt tcaccccagt
6421 tggtgtcatc caagatggta gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc
6481 aagttactca ggcagaaata ctcctaatgt acatctggcc cccgctgtag cccccacttt
6541 tccgggtgag caacttctct tcttcagatc caccatgccc gggtgcagcg ggtaccccaa
6601 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc
6661 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt
6721 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gtcaacatga
6781 tttggttatt ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac
6841 gcttgccccc atgggaaatg gaacggggcg tagacgtgca ctataatggc tggagctttc
6901 tttgctggat tggcatctga tgtccttggc tcagggcttg gttcccttat caatgctggg
6961 gccggggcca tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc
7021 ttccaattta gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa
7081 gcacaaattg aggccaccaa aaggctacaa caggaaatga tgaaagttaa gcaggtaatg
7141 ctcctagagg gtgggttctc tgagacagat gcggcccgcg gggcaatcaa cgcccccatg
7201 acaaaagctt tggactggag cgggacaagg tattgggctc ccgatgctag gactacaaca
7261 tacaatgcag gccgcttttc cacccctcag ccatcggggg cactgccagg aagagctaat
7321 cttagggatg ctgtccctgc tcggggttcc tccagtaagc cttctaattc ttccactgct
7381 acttctgtgt actcaaatca aactacttca acgagacttg gttctacagc tggttctggt
7441 accagtgtct cgagcttccc gtcaactgca aggactagga actgggttga ggatcaaagc
7501 aggaatttgt cacctttcat gaggggggcc cataacatat cgtttgtcac cccaccatct
7561 agcagatcct ctagccaagg cacagtctca accgtgccta aagagatttt ggactcctgg
7621 actggcgctt tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag
7681 tcacgggtgt aatgtgaaaa gaca
//