Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546179 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 58..5151
ORF2: 5132..6754
ORF3: 6754..7560
LOCUS MZ546179 7560 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-6, complete genome.
ACCESSION MZ546179
VERSION MZ546179.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7560)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-6"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 58..5151
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75108.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQ
PPPKETPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKEGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RVRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDERSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5132..6754
/codon_start=1
/product="VP1"
/protein_id="QZA75109.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPANICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVRFETDTDHDFEANQNTKFTPVGVIQDG
GTTHQNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSSMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6754..7560
/codon_start=1
/product="VP2"
/protein_id="QZA75110.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALLGRANLRDAVPARGPSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVENQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ccccgagggc ccgcttaaaa gtgacagcca tgttagaaaa cacaccgtca cttgaagatg
61 gcgtctaacg acgcttccgc tgccgctgtt gccaacagca acaacgacat cgcaaaatct
121 tcaagtgacg gtgtgttttc taacatggct gtcactttta agcgggccct cggggcgcgg
181 cctaaacagc cgcccccgaa ggaaacacca cccagacccc cgcgaccacc cacaccagaa
241 ttggtcaaaa agatccctcc tcccccaccc aacggggagg atgaactagt ggtctcttac
301 agcgccaaag aaggcgtttc cggactgcct gagctcacca ctgtcagaca accggaagaa
361 accaacacgg cgttcagtgt ccccccactc aaccaaagag agagcaggga cgccaaggag
421 ccactaactg gaacaatcat tgaaatgtgg gatggagaaa tctaccatta cggcctgtac
481 gtggaacgag gtcttatact tggtgtgcac aagccaccgg cagccattag ccttgccaag
541 gtcgagctag caccgctctc tttgttctgg agacctgtgt acacccccca gtacctcatc
601 tctccagaca ctcttaggag attacatgga gagtcattcc cctacactgc atttgacaac
661 aattgctacg ccttttgttg ttgggtatta gacctaaacg actcatggtt aagcaggaga
721 atgattcaga gaacaacagg cttcttcagg ccgtaccagg attggaacag gaaacccctc
781 cccactatgg atgattccaa attaaagaag gtagccaaca tattcttgtg cactttgtct
841 tcactattca ccaggcccat taaggacata atagggaagt tgaaacctct taacatcctt
901 aacattctgg ccacatgtga ttggaccttc gcaggtatag tggaatcctt aatactcttg
961 gcagaactct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat cgcccccttg
1021 ctaggtgatt atgaactgca aggacctgag gaccttgcag tggaactggt cccaatagtg
1081 atggggggga taggtttggt gctaggattt accaaagaga aaatcggaaa gatgctatca
1141 tccgctgcat ccactttaag agcttgtaaa gaccttggtg catacggact ggaaatctta
1201 aaattggtca tgaagtggtt cttcccaaag aaagaggaag caaatgaact ggctatggtg
1261 agatccatcg aggatgcagt actagacctc gaggcaattg aaaacaacca catgaccacc
1321 ctactcaaag acaaagacag cttggcaacc tacatgagga cccttgacct tgaggaggag
1381 aaagccagaa aactctcaac caaatctgct tcacccgata ttgtgggcac aatcaactct
1441 cttctggcaa gaatcgctgc tgcacgctcc ctagtgcatc gggcgaaaga agagctctcc
1501 agcaggccga gacctgtcgt tgtgatgata tcgggaagac cagggatagg gaagactcac
1561 cttgccaggg agctggccaa aaagatcgcg gcctccctca caggggacca gcgtgtgggt
1621 cttatcccac gcaatggtgt cgaccactgg gatgcataca agggcgaaag agttgtccta
1681 tgggacgact atggaatgag caaccccatc catgatgccc tcaggttgca ggagcttgct
1741 gacacttgtc ccctcacgct aaattgtgac agaattgaga acaaagggaa agtctttgac
1801 agtgatgcca taattatcac cactaatctg gccaacccag caccactgga ttatgtcaac
1861 tttgaagcgt gctcgagacg cattgatttc ctcgtgtacg cagaagcccc tgaggtggag
1921 aaggcaaagc gcgacttccc aggtcaacct gacatgtgga agaacgcttt cagtcctgac
1981 ttctcacaca taaaactgtc attggctcca cagggtggtt ttgacaagaa cggtaatacc
2041 ccgcatggaa aaggggtcat gaagaccctc accactggct ccctcatcgc ccgagcatca
2101 gggttactcc atgagaggct agatgaatat gaactgcaag gcccagccct caccactttc
2161 aactttgacc gcaacaaaat acttgctttt agacagcttg ctgctgaaaa caagtatggg
2221 ctgatggaca caatgagagt tggaaaacag ctcaaggatg tcaagaccat gtcagacctc
2281 aaacaagcac tcaagaacat cgcgatcaag aagtgccaga tagtgtacaa tggtggcacc
2341 tacacacttg aggctgatgg caagggtagt gtgaaagttg acaaagtgca aagtgccact
2401 gtgcagacca acaatgaact agccggtgcc ctacaccacc taaggtgcgc tagagtcaga
2461 tactatgtta agtgcgtcca ggaggcactg tattccatca tccaaatcgc tggggctgca
2521 ttcgtcacca cgcgcatcgc taagcgcatg aatatacaga atctctggtc caagccacag
2581 gtggaagaca cagaagagat ggccaacaaa gatggttgcc taaaacccaa agatgatgag
2641 gagtttgtcg tctcatccga cgacatcaaa actgagggca agaaagggaa gaacaagtcc
2701 ggccgtggca agaagcacac agccttttca agtaaagggc tcagtgatga ggagtacgat
2761 gagtacaaga gaatcagaga agaaagaaat ggtaagtact ccatagaaga gtaccttcag
2821 gacagagaca ggtactacga agaggtggcc attgccaggg caaccgaaga ggacttctgt
2881 gaagaagaag aggccaaaat ccggcagaga attttcagac caacaaggaa acaacgaaaa
2941 gaagagaggg cctctctcgg cttggtcaca ggctctgaaa tcaggaagag gaacccagaa
3001 gacttcaaac ccaagggaaa gctgtgggct gatgatgaaa gaagtgtcga ctacaatgag
3061 aaactcaact ttgaggcccc accaagcatc tggtcgcgga tagtcaactt tggttcaggc
3121 tggggcttct gggtctcccc cagtctgttt ataacatcaa cccatgtcat accccaaggt
3181 gcaaaagagt tcttcggagt ccctatcaag caaatccaga tacacaagtc aggtgaattc
3241 tgccggttga ggttcccaaa accaatcaga actgatgtga cgggcatgat tctagaagaa
3301 ggtgcgcccg aggggaccgt ggccacactg ctcatcaaga gaccaactgg agagctcatg
3361 cctctggcag ccagaatggg gacccatgca accatgaaga ttcaggggcg cacagttgga
3421 gggcaaatgg gcatgctcct gacaggatcc aacgccaaga gtatggacct aggcacaaca
3481 ccaggcgact gcggctgccc ctacatctac aagagaggga atgactacgt ggtcatagga
3541 gtccatacgg ccgctgcccg tggaggaaac actgtcatat gtgccaccca ggggaatgag
3601 ggagaagcca cacttgaagg aggtgacagt aaagggacat actgtggcgc gccaatcttg
3661 ggcccaggga gtgctccgaa gctcagcacc aagactaagt tttggagatc atccacaaca
3721 ccactcccac ctggcaccta cgaaccagcc tacctcggtg gtaaagaccc tagagtcaaa
3781 ggtggccctt cactgcaaca agttatgagg gaccagctga agccattcac agaacccaga
3841 ggcaaaccac caagaccgaa tgtgttggaa gctgccaaga aaaccatcat caatgtcctt
3901 gagcaaacaa ttgacccacc ccaaaaatgg tcatttgcgc aagcttgcgc atcccttgac
3961 aaaaccacct ccagcggcca cccgcatcac atgcggaaaa acgactgttg gaatggggag
4021 tccttcacag gaaaattggc tgatcaagcc tccaaggcca acctaatgtt tgaagaggga
4081 aagaacatga ctccagtcta cacaggtgca cttaaagatg agttggtaaa gaccgacaaa
4141 gtttatggta aggtcaagaa gaggcttctg tggggttcag atctggcgac catgatacgg
4201 tgcgcccgag cctttggagg ccttatggat gaactcaagg cacactgtgt cacacttcct
4261 gtcagagttg gtatgaacat gaatgaggat ggccccatca tctttgagaa gcactccaga
4321 tatagatatc actatgatgc tgattattcc cggtgggact caacacaaca aagggatgtg
4381 ctagcagcag cactagaaat catggttaag ttctctccag aaccacacct ggcccagata
4441 gttgcagaag acctcctctc ccctagcgtg atggatgtag gcgactttca aatatcaata
4501 agtgagggtc tcccctctgg ggtgccttgt acctcccagt ggaattccat cgcccactgg
4561 ctcctcactc tgtgtgcact ctctgaagtc acggacctgt cccctgatat cgttcaggcc
4621 aactcccttt tctccttcta tggtgatgat gaaattgtaa gcacagacat aaagttggac
4681 ccagagaagc tgacagcaaa actcaaggag tacgggctga aaccaacccg ccccgacaaa
4741 actgaaggac cccttgttat ctctgaagac ctggatggcc tgacattcct ccggagaact
4801 gtgacccgtg atccagctgg ctggtttgga aaattggaac aaagttcaat tctcaggcaa
4861 atgtactgga ccaggggtcc caaccatgaa gacccatttg aaacaatgat accacactcc
4921 caaagaccca tacaattgat gtccttgctg ggcgaggctg cactccacgg cccgacattc
4981 tatagcaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat ggatttttac
5041 gtacccagac aagagccaat gttcagatgg atgagattct cagatctgag cacgtgggag
5101 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg acgccaaccc
5161 atctgatggg tccgcagcca acctcgtccc agaggtcaac aatgaggtta tggctctgga
5221 gcccgttgtt ggtgccgcca ttgcggcacc tgtagcgggc caacaaaatg taattgaccc
5281 ctggattaga aataattttg tacaagcccc tggtggagag tttacagtat cccctagaaa
5341 cgctccaggt gaaatactat ggagcgcgcc cttgggccct gatctaaacc cctacctatc
5401 ccatttggcc agaatgtaca atggttatgc aggtggcttt gaagtgcagg taattctcgc
5461 ggggaacgcg ttcaccgccg ggaaagtcat atttgctgca gtcccaccaa attttccaac
5521 tgaaggcttg agccccagcc aggtcactat gttcccccat atagtagtag atgttaggca
5581 attagaacct gtgttgattc ccttacccga cgttaggaat aatttctatc attataatca
5641 atcaaatgac cccaccatta agttgatagc aatgttgtat acaccactta gggctaataa
5701 tgctggggat gatgtcttca cagtttcttg ccgagttctc acgaggccat cccccgattt
5761 tgatttcata tttctagtgc cacccacagt tgagtcaaga actaaaccat tctctgtccc
5821 agttttaact gttgaggaga tgaccaattc aagattcccc attcctttgg aaaagttgtt
5881 cacgggtccc agcagtgcct ttgttgtcca accacaaaac ggtaggtgca cgactgatgg
5941 cgtgctccta ggcaccaccc aactgtctcc tgccaacatc tgcaccttca gaggagatgt
6001 cacccatatc acaggtagtc ataactacac aatgaatttg gcttctcaaa attggagcaa
6061 ttatgaccca acagaagaaa tcccagcccc tctaggaact ccagactttg tggggaagat
6121 tcaaggcgtg ctcacccaaa ccacaaggac agatggttca acacgcggcc acaaagccac
6181 agtgtacact gggagcgctg actttgctcc aaaactgggt agagttcgat ttgaaactga
6241 cacagaccat gattttgaag ctaaccaaaa cacaaagttc accccagttg gtgtcatcca
6301 agatggtggc accacccacc aaaatgaacc ccaacaatgg gtgcttccaa gttactcagg
6361 cagaaatact cctaatgtgc atctggcccc cgctgtagcc cccacttttc cgggtgagca
6421 acttctcttc ttcagatcct ccatgcccgg atgcagcggg taccccaaca tggacttgga
6481 ctgcctgctc cctcaggaat gggtgcagca cttctatcaa gaggcagccc cagcacagtc
6541 tgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggttttgt ttgagtgtaa
6601 gcttcataaa tcaggctatg ttacagtggc tcacactggc caacatgatt tggttatccc
6661 ccccaatggt tattttaggt ttgattcctg ggtcaaccag ttttacacgc ttgcccccat
6721 gggaaatgga acggggcgta gacgtgcact ataatggctg gagctttctt tgctggattg
6781 gcatctgatg tccttggctc tggacttggt tcccttatca atgctggggc tggggccatc
6841 aaccaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt ccaatttagc
6901 agcaacctac aacaggcttc ctttcaacat gacaaagaga tgctccaagc acaaattgag
6961 gccaccaaaa ggctacaaca ggaaatgatg aaagttaagc aggcaatgct cctagagggt
7021 gggttttctg agacagatgc agcccgcggg gcaatcaacg cccccatgac aaaagctttg
7081 gactggagcg ggacaaggta ctgggctccc gatgctagga ctacaacata caatgcaggc
7141 cgcttttcta cccctcaacc atcgggggca ctgctaggaa gagctaatct tagggatgct
7201 gtccctgctc ggggtccctc cagtaagtct tctaattctt ccactgctac ttctgtgtac
7261 tcaaatcaaa ctacttcaac gagacttggt tctacagctg gttctggcac cagtgtctcg
7321 agcttcccgt caactgcaag gactaggagc tgggttgaga atcaaaatag gaatttgtca
7381 cctttcatga ggggggcaca caacatatcg tttgtcaccc caccatctag cagatcctct
7441 agccaaggca cagtctcaac cgtgcctaaa gagattttgg actcctggac tggcgctttc
7501 aacacgcgca ggcagccact cttcgctcac attcgtaagc gaggggagtc acgggtgtaa
//