Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546178 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 190..5283
ORF2: 5264..6886
ORF3: 6886..7692
LOCUS MZ546178 7738 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-5, complete genome.
ACCESSION MZ546178
VERSION MZ546178.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7738)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7738)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7738
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-5"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 190..5283
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75105.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKSIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5264..6886
/codon_start=1
/product="VP1"
/protein_id="QZA75106.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6886..7692
/codon_start=1
/product="VP2"
/protein_id="QZA75107.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGTLPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 tggcgctgta agagaccact agttcatcct ccccgttggg tgggggagga gggatctttt
61 tgaccaattc tggtgtgggt ggtcgcgggg gtctgggtgg tatttccttc gggggcggct
121 gtttaggccg cgccccgagg gcccgcttaa aagtgacagc catgttagaa aacacaccgt
181 cacttgaaga tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac
241 atcgcaaaat cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc
301 ctcggggcgc ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca
361 cccacaccag aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta
421 gtggtctctt acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga
481 caaccggaag aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg
541 gacgccaagg agccactaac tggaacaatc attgaaatgt gggatggaga aatctaccat
601 tacggcctgt acgtggaacg aggtcttata cttggtgtgc acaagccacc agcagccatt
661 agccttgcca aggtcgagct ggcaccgctc tctttgttct ggagacctgt atataccccc
721 cagtacctca tctctccaga cactcttagg agattacatg gagagtcatt cccctacact
781 gcatttgaca acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg
841 ctaagcagga gaatgattca gagaacaaca ggcttcttca ggccgtacca ggattggaac
901 aggaaacccc tccccactat ggatgattcc aagttaaaga aggtagccaa catattcttg
961 tgcactttgt cttcactatt caccagaccc attaaggaca taatagggaa gttgaaacct
1021 cttaacatcc ttaacattct ggctacatgt gattggacct tcgcaggcat agtggaatcc
1081 ttaatactct tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg
1141 atcgccccct tgctaggtga ttatgaactg caaggacctg aggaccttgc agtggaactg
1201 gtcccaatag tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaatcgga
1261 aagatgctat catccgctgc atccacttta agagcttgta aagacctcgg tgcatacgga
1321 ctggaaatct taaaattggt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa
1381 ctggctatgg tgagatccat cgaggatgca gtattagacc tcgaggcaat tgaaaacaac
1441 cacatgacca ccctgctcaa agacaaagac agcttggcaa cctacatgag aacccttgac
1501 cttgaggagg agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc
1561 acaattaact ctcttctggc aagaatcgct gctgcacgct ccctagtgca tcgggcgaaa
1621 gaagagctct ccagcaggcc gagacctgtc gttgtaatga tatcgggaag accagggata
1681 gggaaaactc accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac
1741 cagcgtgtgg gtcttatccc acgcaatggt gtcgaccact gggacgcgta caagggcgaa
1801 agagttgtcc tatgggacga ctatggaatg agcaacccca tccatgatgc cctcaggttg
1861 caggagcttg ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaagga
1921 aaagtctttg acagtgatgc cataattatc accaccaacc tggccaaccc agcaccactg
1981 gattatgtca actttgaagc gtgctcgaga cgcattgatt tcctcgtgta cgcagaagcc
2041 cctgaggtgg agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct
2101 ttcagtcctg acttctcaca cataaaactg tcattggctc cacagggtgg ttttgacaag
2161 aacggcaaca ccccgcatgg gaaaggggtc atgaagaccc tcaccactgg ctccctcatc
2221 gcccgagcat cagggttact ccatgagagg ctagatgaat atgaactgca aggcccagcc
2281 ctcaccactt tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa
2341 aacaagtatg ggctgatgga cacaatgaga gttggaaaac agctcaagga tgtcaagacc
2401 atgtcagacc tcaaacaagc actcaagagc atcgcgatca agaagtgcca gatagtgtac
2461 aatggtggca cctacacact tgaggctgat ggcaagggta gtgtgaaagt tgacaaagtg
2521 caaagtgcca ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc
2581 gctagaatca gatactatgt taagtgcgtc caggaggcac tttattccat catccaaatc
2641 gctggggctg catttgtcac cacgcgcatc gctaaacgca tgaatataca gaatctctgg
2701 tccaagccac aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc
2761 aaagatgatg aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg
2821 aagaacaagt ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat
2881 gaggagtacg atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa
2941 gagtaccttc aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa
3001 gaggacttct gtgaagaaga agaggccaaa atccggcaga gaattttcag accaacaagg
3061 aaacaacgca aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag
3121 agaaacccag aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt
3181 gactacaatg agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac
3241 tttggttcag gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc
3301 ataccccaag gtgcaaaaga gttcttcgga gtccccatca agcaaatcca gatacacaag
3361 tcaggtgaat tctgccggct gagattccca aagccaatca gaaccgatgt gacgggcatg
3421 attctagaag aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gaggccaact
3481 ggagagctca tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg
3541 cgcacagttg gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac
3601 ctaggcacaa caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac
3661 gtggtcatag gagtccatac ggccgctgcc cgtggaggaa acactgtcat atgcgccacc
3721 cagggaagtg agggagaggc cacacttgaa ggaggtgaca gtaaagggac ttactgtggc
3781 gcaccaatct tgggcccagg gagcgctccg aagctcagca ccaaaactaa gttttggaga
3841 tcatccacaa caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac
3901 cctagagtca aaggtggccc ttcattgcaa caagttatga gggaccagct gaagccattc
3961 acagaaccca gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc
4021 atcaatgtcc ttgaacaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc
4081 gcatcccttg acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgactgt
4141 tggaatgggg agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg
4201 tttgaagagg gaaagaacat gactccagtc tacacaggtg cacttaaaga tgagttggta
4261 aagaccgata aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg
4321 accatgatac ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcacactgt
4381 gtcacactcc ctgtcagagt tggtatgaac atgaatgagg atggccccat catcttcgag
4441 aagcactcca gatatagata tcactatgat gctgactatt cccggtggga ctcaacacaa
4501 caaagggatg tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac
4561 ctggcccaga tagttgcaga agacctcctc tcccctagcg tgatggatgt aggtgacttt
4621 caaatatcaa taagtgaggg tctcccctct ggggtacctt gtacctccca gtggaattcc
4681 atcgcccact ggctcctcac tctgtgtgca ctctctgaag tcacggacct gtcccctgat
4741 atcattcagg ccaactctct tttctccttc tatggtgatg atgagattgt aagcacagac
4801 ataaaattgg acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc
4861 cgccccgaca aaactgaagg accccttgtt atctctgagg acctggatgg tctgacattt
4921 ctccggagaa ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca
4981 attcttaggc aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg
5041 ataccacact cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac
5101 ggcccggcat tctacagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc
5161 atggattttt acgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5221 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
5281 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
5341 tatggctctg gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa
5401 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt
5461 atctcctaga aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa
5521 tccctaccta tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca
5581 ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc
5641 aaattttcca actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt
5701 agatgttagg caattagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta
5761 tcattacaat caatcaaatg accccaccat taagttgata gcaatgttgt atacaccact
5821 tagggctaat aatgctgggg acgatgtctt cacagtttct tgccgagttc tcacgagacc
5881 atcccccgat tttgacttca tatttctagt gccacccaca gttgagtcaa gaactaaacc
5941 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccattccttt
6001 ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggtaggtg
6061 cacgactgat ggcgtgctcc taggcaccac ccaactatct cctgtcaaca tctgcacctt
6121 cagaggagat gtcacccata tcacaggtag tcataactac acaatgaatt tggcttctca
6181 aaattggagc aattacgacc caacagaaga aatcccagcc cctctaggaa ctccagactt
6241 tgtggggaag attcaaggcg tgcttaccca aaccacaagg acagatggct caacacgcgg
6301 ccacaaagcc acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca
6361 atttgaaact gacacaaacc atgattttga agctaaccaa aacacaaagt tcaccccagt
6421 tggtgtcatc caagatggtg gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc
6481 aagttactca ggcagaaata ctcctaatgt gcatctggcc cccgctgtag cccccacttt
6541 cccgggtgag caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa
6601 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc
6661 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt
6721 gtttgaatgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga
6781 tttggttatc ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac
6841 gcttgccccc atgggaaatg gaacggggcg tagacgtgca ctataatggc tggagctttc
6901 tttgctggat tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg
6961 gctggggcca tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc
7021 ttccaattta gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa
7081 gcacaaattg aggccaccaa aaggttacaa caggaaatga tgaaagttaa gcaggcaatg
7141 ctcctagagg gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccccatg
7201 acaaaagctt tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca
7261 tacaatgcag gtcgcttttc caccccccaa ccatcgggga cactgccagg aagagctaat
7321 cttagggatg ctgtccctgc tcggggttcc tccagtaagt cttctaattc ttctactgcc
7381 acttctgtgt actcaaatca aactacttca acgagacttg gttctacagc tggttctggt
7441 accagtgtct cgagcttccc gtcaactgca aggactagga gctgggttga ggatcaaagt
7501 aggaatttgt cacctttcat gaggggggcc cacaacatat cgtttgtcac cccaccatct
7561 agcagatcct ctagccaagg cacagtctca accgtgccca aagagatttt ggactcctgg
7621 actggcgctt tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag
7681 tcacgggcgt aatgtgaaaa gacaaaattg attatctttc ttttctttag tgtctttt
//