Typing tool
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Typing tool
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Complete norovirus genomes
| MZ546177 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 129..5222
ORF2: 5203..6825
ORF3: 6825..7631
LOCUS MZ546177 7677 bp RNA linear VRL 29-MAR-2022
DEFINITION Norovirus sp. strain Norozj-4, complete genome.
ACCESSION MZ546177
VERSION MZ546177.1
KEYWORDS .
SOURCE Norovirus sp.
ORGANISM Norovirus sp.
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7677)
AUTHORS Yang,S., He,Y., Zhang,J., Zhang,D., Wang,Y., Lu,X., Wang,X.,
Shen,Q., Ji,L., Lu,H. and Zhang,W.
TITLE Viral metagenomics reveals diverse viruses in the fecal samples of
children with diarrhea
JOURNAL Virol Sin 37 (1), 82-93 (2022)
PUBMED 35234620
REFERENCE 2 (bases 1 to 7677)
AUTHORS Yang,S., Zhang,W., Li,H. and Lu,H.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2021) School of Medicine, Jiangsu University,
301, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT ##Assembly-Data-START##
Assembly Method :: geneious v. 11.1.2
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7677
/organism="Norovirus sp."
/mol_type="genomic RNA"
/strain="Norozj-4"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1938392"
/country="China"
/collection_date="2016"
CDS 129..5222
/codon_start=1
/product="nonstructural protein"
/protein_id="QZA75102.1"
/translation="MASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEET
NTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSD
LKQALKSIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5203..6825
/codon_start=1
/product="VP1"
/protein_id="QZA75103.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6825..7631
/codon_start=1
/product="VP2"
/protein_id="QZA75104.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGTLPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gaccaattct ggtgtgggtg gtcgcggggg tctgggtggt atttccttcg ggggcggctg
61 tttaggccgc gccccgaggg cccgcttaaa agtgacagcc atgttagaaa acacaccgtc
121 acttgaagat ggcgtctaac gacgcttccg ctgccgctgt tgccaacagc aacaacgaca
181 tcgcaaaatc ttcaagtgac ggtgtgtttt ctaacatggc tgtcactttt aagcgggccc
241 tcggggcgcg gcctaaacag ccgcccccga aggaaatacc acccagaccc ccgcgaccac
301 ccacaccaga attggtcaaa aagatccctc ctcccccacc caacggggag gatgaactag
361 tggtctctta cagcgccaaa gatggcgttt ccggactgcc tgagctcacc actgtcagac
421 aaccggaaga aaccaacacg gcgttcagtg tccccccact caaccaaagg gagagcaggg
481 acgccaagga gccactaact ggaacaatca ttgaaatgtg ggatggagaa atctaccatt
541 acggcctgta cgtggaacga ggtcttatac ttggtgtgca caagccacca gcagccatta
601 gccttgccaa ggtcgagctg gcaccgctct ctttgttctg gagacctgta tatacccccc
661 agtacctcat ctctccagac actcttagga gattacatgg agagtcattc ccctacactg
721 catttgacaa caattgctac gccttttgtt gttgggtatt agacctaaac gactcatggc
781 taagcaggag aatgattcag agaacaacag gcttcttcag gccgtaccag gattggaaca
841 ggaaacccct ccccactatg gatgattcca agttaaagaa ggtagccaac atattcttgt
901 gcactttgtc ttcactattc accagaccca ttaaggacat aatagggaag ttgaaacctc
961 ttaacatcct taacattctg gctacatgtg attggacctt cgcaggcata gtggaatcct
1021 taatactctt ggcagaactc tttggagttt tctggacacc cccagatgtg tctgcgatga
1081 tcgccccctt gctaggtgat tatgaactgc aaggacctga ggaccttgca gtggaactgg
1141 tcccaatagt gatggggggg ataggtttgg tgctaggatt taccaaagag aaaatcggaa
1201 agatgctatc atccgctgca tccactttaa gagcttgtaa agacctcggt gcatacggac
1261 tggaaatctt aaaattggtc atgaagtggt tcttcccaaa gaaagaggaa gcaaatgaac
1321 tggctatggt gagatccatc gaggatgcag tattagacct cgaggcaatt gaaaacaacc
1381 acatgaccac cctgctcaaa gacaaagaca gcttggcaac ctacatgaga acccttgacc
1441 ttgaggagga gaaagccaga aaactctcaa ccaaatctgc ttcacccgat attgtgggca
1501 caattaactc tcttctggca agaatcgctg ctgcacgctc cctagtgcat cgggcgaaag
1561 aagagctctc cagcaggccg agacctgtcg ttgtaatgat atcgggaaga ccagggatag
1621 ggaaaactca ccttgccagg gagctggcca agaagatcgc ggcctccctc acaggggacc
1681 agcgtgtggg tcttatccca cgcaatggtg tcgaccactg ggacgcgtac aagggcgaaa
1741 gagttgtcct atgggacgac tatggaatga gcaaccccat ccatgatgcc ctcaggttgc
1801 aggagcttgc tgacacttgc cccctcacgc taaattgtga cagaattgag aacaaaggaa
1861 aagtctttga cagtgatgcc ataattatca ccaccaacct ggccaaccca gcaccactgg
1921 attatgtcaa ctttgaagcg tgctcgagac gcattgattt cctcgtgtac gcagaagccc
1981 ctgaggtgga gaaggcaaag cgcgacttcc caggtcaacc tgacatgtgg aagaacgctt
2041 tcagtcctga cttctcacac ataaaactgt cattggctcc acagggtggt tttgacaaga
2101 acggcaacac cccgcatggg aaaggggtca tgaagaccct caccactggc tccctcatcg
2161 cccgagcatc agggttactc catgagaggc tagatgaata tgaactgcaa ggcccagccc
2221 tcaccacttt caactttgac cgcaacaaga tacttgcttt tagacagctt gctgctgaaa
2281 acaagtatgg gctgatggac acaatgagag ttggaaaaca gctcaaggat gtcaagacca
2341 tgtcagacct caaacaagca ctcaagagca tcgcgatcaa gaagtgccag atagtgtaca
2401 atggtggcac ctacacactt gaggctgatg gcaagggtag tgtgaaagtt gacaaagtgc
2461 aaagtgccac tgtgcagacc aacaatgaac tagccggtgc cctacaccac ctaaggtgcg
2521 ctagaatcag atactatgtt aagtgcgtcc aggaggcact ttattccatc atccaaatcg
2581 ctggggctgc atttgtcacc acgcgcatcg ctaaacgcat gaatatacag aatctctggt
2641 ccaagccaca ggtggaagac acagaagaga tggccaacaa agatggttgc ctaaaaccca
2701 aagatgatga agagtttgtc gtctcatccg acgacatcaa aactgagggc aagaaaggga
2761 agaacaagtc cggccgtggc aagaagcaca cagccttttc aagtaaaggg ctcagtgatg
2821 aggagtacga tgagtacaag agaatcagag aagaaaggaa tggtaagtac tccatagaag
2881 agtaccttca ggacagagac aggtactacg aggaggtggc cattgccagg gcaaccgaag
2941 aggacttctg tgaagaagaa gaggccaaaa tccggcagag aattttcaga ccaacaagga
3001 aacaacgcaa agaagagagg gcctctctcg gcttggtcac aggctctgaa atcaggaaga
3061 gaaacccaga agacttcaaa cccaagggaa agctgtgggc tgatgatgac agaagtgttg
3121 actacaatga gaaactcaac tttgaggccc caccaagcat ctggtcgcgg atagtcaact
3181 ttggttcagg ctggggcttc tgggtctccc ccagtctgtt tataacatca acccatgtca
3241 taccccaagg tgcaaaagag ttcttcggag tccccatcaa gcaaatccag atacacaagt
3301 caggtgaatt ctgccggctg agattcccaa agccaatcag aaccgatgtg acgggcatga
3361 ttctagaaga aggtgcgccc gaggggaccg tggccacact gctcatcaag aggccaactg
3421 gagagctcat gcctctggca gccagaatgg ggacccatgc aaccatgaaa attcaggggc
3481 gcacagttgg agggcaaatg ggtatgctcc tgacaggatc caacgccaag agtatggacc
3541 taggcacaac accaggcgac tgcggctgcc cctacatcta caagaggggg aatgactacg
3601 tggtcatagg agtccatacg gccgctgccc gtggaggaaa cactgtcata tgcgccaccc
3661 agggaagtga gggagaggcc acacttgaag gaggtgacag taaagggact tactgtggcg
3721 caccaatctt gggcccaggg agcgctccga agctcagcac caaaactaag ttttggagat
3781 catccacaac accactccca cctggcacct acgaaccagc ctacctcggt ggcaaagacc
3841 ctagagtcaa aggtggccct tcattgcaac aagttatgag ggaccagctg aagccattca
3901 cagaacccag aggcaaacca ccaagaccaa atgtgttgga agctgccaag aaaaccatca
3961 tcaatgtcct tgaacaaaca attgatccac cccaaaaatg gtcatttgcg caagcttgcg
4021 catcccttga caaaaccacc tccagcggcc acccgcacca catgcggaaa aacgactgtt
4081 ggaatgggga gtccttcaca ggaaaattgg ctgatcaagc ctccaaggcc aacctaatgt
4141 ttgaagaggg aaagaacatg actccagtct acacaggtgc acttaaagat gagttggtaa
4201 agaccgataa agtttatggt aaggtcaaga agaggcttct gtggggttca gatctggcga
4261 ccatgatacg gtgcgcccga gcttttggag gccttatgga tgaactcaag gcacactgtg
4321 tcacactccc tgtcagagtt ggtatgaaca tgaatgagga tggccccatc atcttcgaga
4381 agcactccag atatagatat cactatgatg ctgactattc ccggtgggac tcaacacaac
4441 aaagggatgt gctagcagca gcactagaaa tcatggttaa gttctctcca gaaccacacc
4501 tggcccagat agttgcagaa gacctcctct cccctagcgt gatggatgta ggtgactttc
4561 aaatatcaat aagtgagggt ctcccctctg gggtaccttg tacctcccag tggaattcca
4621 tcgcccactg gctcctcact ctgtgtgcac tctctgaagt cacggacctg tcccctgata
4681 tcattcaggc caactctctt ttctccttct atggtgatga tgagattgta agcacagaca
4741 taaaattgga cccagagaag ctgacagcaa aactcaagga gtacgggctg aaaccaaccc
4801 gccccgacaa aactgaagga ccccttgtta tctctgagga cctggatggt ctgacatttc
4861 tccggagaac tgtgacccgt gatccagctg gctggtttgg aaaattggaa caaagttcaa
4921 ttcttaggca aatgtactgg accaggggtc ccaaccatga agatccattt gaaacaatga
4981 taccacactc ccaaagaccc atacaattga tgtccttgct gggcgaggct gcactccacg
5041 gcccggcatt ctacagcaaa attagcaaat tagtcattgc agagttgaag gaaggtggca
5101 tggattttta cgtacccaga caagagccaa tgttcagatg gatgagattc tcagatctga
5161 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgagt
5221 gacgccaacc catctgatgg gtccgcagcc aacctcgtcc cagaggtcaa caatgaggtt
5281 atggctctgg agcccgttgt tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat
5341 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagta
5401 tctcctagaa acgctccagg tgaaatacta tggagcgcgc ccttgggccc tgatctaaat
5461 ccctacctat cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag
5521 gtaattctcg cggggaacgc gttcaccgcc gggaaggtca tatttgcagc agtcccacca
5581 aattttccaa ctgaaggctt gagccccagc caggtcacta tgttccccca tatagtagta
5641 gatgttaggc aattagaacc tgtgttgatt cccttacccg atgttaggaa taatttctat
5701 cattacaatc aatcaaatga ccccaccatt aagttgatag caatgttgta tacaccactt
5761 agggctaata atgctgggga cgatgtcttc acagtttctt gccgagttct cacgagacca
5821 tcccccgatt ttgacttcat atttctagtg ccacccacag ttgagtcaag aactaaacca
5881 ttctctgtcc cagttttaac tgttgaggag atgaccaatt caagattccc cattcctttg
5941 gaaaagttgt tcacgggtcc cagcagtgcc tttgttgtcc aaccacaaaa cggtaggtgc
6001 acgactgatg gcgtgctcct aggcaccacc caactatctc ctgtcaacat ctgcaccttc
6061 agaggagatg tcacccatat cacaggtagt cataactaca caatgaattt ggcttctcaa
6121 aattggagca attacgaccc aacagaagaa atcccagccc ctctaggaac tccagacttt
6181 gtggggaaga ttcaaggcgt gcttacccaa accacaagga cagatggctc aacacgcggc
6241 cacaaagcca cagtgtacac tgggagcgcc gactttgctc caaaactggg tagagttcaa
6301 tttgaaactg acacaaacca tgattttgaa gctaaccaaa acacaaagtt caccccagtt
6361 ggtgtcatcc aagatggtgg caccacccac cgaaatgaac cccaacagtg ggtgctccca
6421 agttactcag gcagaaatac tcctaatgtg catctggccc ccgctgtagc ccccactttc
6481 ccgggtgagc aacttctctt cttcagatcc accatgcccg gatgcagcgg gtaccccaac
6541 atggatttgg actgtctgct cccccaggaa tgggtgcagt acttctacca agaggcagcc
6601 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg
6661 tttgaatgta agcttcataa atcaggctat gttacagtgg ctcacactgg ccaacatgat
6721 ttggttatcc cccccaatgg ttattttagg tttgattcct gggtcaacca gttttacacg
6781 cttgccccca tgggaaatgg aacggggcgt agacgtgcac tataatggct ggagctttct
6841 ttgctggatt ggcatctgat gtccttggct ctggacttgg ttcccttatc aatgctgggg
6901 ctggggccat caaccaaaaa gttgagtttg aaaataacag aaaattgcaa caagcatcct
6961 tccaatttag cagcaatcta caacaggctt cctttcaaca tgacaaagag atgctccaag
7021 cacaaattga ggccaccaaa aggttacaac aggaaatgat gaaagttaag caggcaatgc
7081 tcctagaggg tgggttctct gagacagatg cagcccgcgg ggcaatcaac gcccccatga
7141 caaaagcttt ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat
7201 acaatgcagg tcgcttttcc accccccaac catcggggac actgccagga agagctaatc
7261 ttagggatgc tgtccctgct cggggttcct ccagtaagtc ttctaattct tctactgcca
7321 cttctgtgta ctcaaatcaa actacttcaa cgagacttgg ttctacagct ggttctggta
7381 ccagtgtctc gagcttcccg tcaactgcaa ggactaggag ctgggttgag gatcaaagta
7441 ggaatttgtc acctttcatg aggggggccc acaacatatc gtttgtcacc ccaccatcta
7501 gcagatcctc tagccaaggc acagtctcaa ccgtgcccaa agagattttg gactcctgga
7561 ctggcgcttt caacacgcgc aggcagccac tcttcgctca cattcgtaag cgaggggagt
7621 cacgggcgta atgtgaaaag acaaaattga ttatctttct tttctttagt gtctttt
//