Typing tool
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Typing tool
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Complete norovirus genomes
| MZ478140 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 9..5108
ORF2: 5089..6711
ORF3: 6711..7517
LOCUS MZ478140 7521 bp RNA linear VRL 07-FEB-2022
DEFINITION Norovirus GII isolate G11_6 nonstructural polyprotein (ORF1), VP1
(ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MZ478140
VERSION MZ478140.1
DBLINK BioProject: PRJNA592261
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE High prevalence and diversity of caliciviruses in a community
setting determined by a metagenomic approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7521)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia
Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col.
Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT ##Assembly-Data-START##
Assembly Method :: SPADES v. 3.13.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G11_6"
/isolation_source="stool"
/host="Homo sapiens; Stool of a female infant of 6 months
old"
/db_xref="taxon:122929"
/country="Mexico: Morelos,Xoxocotla"
/collection_date="13-Apr-2016"
/note="genotype: GII.P16|GII.4"
gene 9..5108
/gene="ORF1"
CDS 9..5108
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QXF25907.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEGPVIRYEVKSGISGLPELTTVPQ
PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNILNVLATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQVIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCAQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLTQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 9..1004
/gene="ORF1"
/product="p48"
mat_peptide 1005..2102
/gene="ORF1"
/product="NTPase"
mat_peptide 2103..2633
/gene="ORF1"
/product="p22"
mat_peptide 2634..3032
/gene="ORF1"
/product="VPg"
mat_peptide 3033..3575
/gene="ORF1"
/product="Pro"
mat_peptide 3576..5105
/gene="ORF1"
/product="RdRp"
gene 5089..6711
/gene="ORF2"
CDS 5089..6711
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QXF25908.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6711..7517
/gene="ORF3"
CDS 6711..7517
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QXF25909.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSNKSS
NSSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKQGESRV"
ORIGIN
1 tctggtgaat gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca
61 acgacaagga aaaatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga
121 aagccctcgg ggctaggccc aaacagcctg ccccgagaga cgaaccacaa aagcccccaa
181 gaccaccaac tcccgagttg gtcaagagga taccccctcc tccacctaat ggcgaagaag
241 aagaaggacc agtcattagg tatgaggtta agagtgggat ctctggcctg cccgagctca
301 caacagtccc ccaaccggac gtggccaaca cagcattcag cgttccacca ttgagcttga
361 gagaaaacag ggaggccaag gaaccgctaa caggggcaat actagagatg tgggatggag
421 agatatacca ctatggcctg tacgtggaga aaggcttagt gttgggtgtg cataaaccac
481 ctgcagccat aagcatggca agagtggaac tgacgccgct gtcattgtac tggcgtgtgg
541 tgtacactcc ccaatacctc atctcccctg aaactctcag gaggctcaac ggagaggcgt
601 tcccttacac tgcctttgac aacaattgct atgctttttg ctgctgggtg ttggacctca
661 atgactcatg gcttagcagg aggatggtgc aaagaacaac gggcttcttc agaccttacc
721 aagagtggaa cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtggcaa
781 atatattcct atgttcattg tccacattat tcaccagacc cataaaagac ctcataggaa
841 aaataaaacc attaaacata ttgaatgtct tggcaacgtg tgactggacg tttgccggaa
901 tagtggagtc tctgatatta cttgctgaac tcttcggagt tttctggaca cccccagatg
961 tgtctgctat gatcgctccc ttactcgggg actacgagtt gcaagggcca gaagacctcg
1021 ccgttgaact cgtacctgtg gtaatgggag ggattggttt ggtgttggga ttcaccaaag
1081 agaaaattgg aaaaatgttg tcctcagcag catcaacact cagggcttgc aaagatcttg
1141 gtgcctatgg cttagagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg
1201 aggccaatga gctagccatg gtgagggcca tagaggatgc cgtactagat cttgaggcaa
1261 tagaaaataa tcacatgaca accctgttga aagacaaaga cagcttagca acatacatga
1321 aaacactgga catggaggag gagaaagcca gaaggttgtc cacgaaatct gcatcccctg
1381 acatagttgg gacaatcaac gccctgctgg ctcgaatagc agcggccagg tcattagtcc
1441 atagggccaa ggaggagcta tctagcagga tgagaccagt agttgttatg atatctggca
1501 aaccaggaat aggcaaaacc catctggcca gggaggtggc aagaaaggtg gcatccactc
1561 tcacagggga tcaaagagtc ggactcatac caagaaacgg tgtggaccat tgggatgcat
1621 acaaaggtga gagagtcgtg ctgtgggacg actatggcat gagtaacccc attcatgatg
1681 ctcttcgcat acaagaattg gctgatacgt gtccccttac cttaaattgt gacagaattg
1741 aaaataaggg aaaagtcttt gacagtgaag tcataataat tacaacaaac cttgccaacc
1801 cagccccact tgattatgtc aactttgagg cctgctccag gagaattgac ttcctggtgt
1861 acgctgaggc accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagatatgt
1921 ggaaggacgc cttcaaatcg gacttttcac atatcaagct acagcttgca cctcaaggcg
1981 gctttgacaa gaatggcaac accccacatg ggaaaggagt gatgaagacc ctcactaccg
2041 gctctctaat tgcccgtgca tcaggcctac tgcatgagag gatggatgaa tttgaactcc
2101 aaggtcccac aatcaccacc tttaatttcg accggaacag aatcacagca ttcagacaat
2161 tggctgcaga aaacaagtat ggattggtgg ataccatgaa agttggcaat caactaaaag
2221 gagtgaaaac catggaagaa ctcaaacaag taatcaggaa tgtgaccatc aagaggtgcc
2281 agatcatcta cggtggctcc acgtatgacc ttgaatctga tggcaagggc aaagttttgg
2341 tggaaaaggt caagaacacc tctgtgcaga ccaacaacga gttggccggg gccctgcacc
2401 atctcaaaca tgcccgaatc aggtactatg tcaaatgtgc gcaagaagca gtctattcca
2461 ttatacaaat tgccggcgct gcgtttgtca ccacgcgcat tgcacgccgc atgaacatac
2521 aagaactctg gtcgaagcca caattagatc aaaatgagtc agagactaag gaagaggccc
2581 ccaagttaga agatgacgag ttcatcatat cttctaagga catcaaggag gaagggaaga
2641 agggcaaaaa caagactggc cgtggcaaga aacacactgc attctccagc aagggcttga
2701 gcgatgagga gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta
2761 tagaggagta tcttcaagac agagacaggt actatgagga gctcgccatt gccaaggcca
2821 cagaagaaga cttctgtgaa gaggaggaga tcaaaatccg tcagagaatt tttcgcccca
2881 ccaggaaaca aagaaaggaa gagagggcca cattagggct agtaacaggt tcagagatca
2941 gaaaaagaaa ccctgatgac ttcaaaccca aagggaagct gtgggccgat gacaacagaa
3001 gtgttgacta caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg
3061 tgagctttgg ttctggctgg ggcttctggg tgtcaccaag cctgttcata acatcaactc
3121 atgtaatccc cgcaggcata acagaagcat ttggagtccc catcaaacaa attcagatcc
3181 acaaatcagg tgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag
3241 gaatgatttt ggaagaaggt gcgcctgaag gcaccgtggc aactgtgctc atcaaacgcc
3301 ccaccggaga gctcatgcct cttgcagcca gaatgggaac acatgcaacc atgagaattc
3361 aaggccgcat ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa
3421 tggatttggg aacaactcct ggtgactgtg gctgtcctta catctataaa aggggcaatg
3481 actatatagt cattggggtg cacactgcag cagcccgtgg tgggaacacc gtcatctgtg
3541 ccacacaggg aagtgagggt gaggcaactc ttgagggtgg agatgacaaa ggaacatact
3601 gtggggcacc tattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt
3661 ggaggtcatc gaacacgccc cttccaccag ggacatatga gcctgcctac ctcggtggcc
3721 gcgatccgcg tgttaagggt gggccctcct tgcagcaggt aatgagagac cagttgaagc
3781 cattcactga acccaggggc aaacctccaa gaccaagtgt attggaagca gccaaacaaa
3841 ccattatcaa tgtcctcgaa caaaccctgg accctccaca aaaatggaca tacgcacagg
3901 cgtgtgcctc acttgacaaa accacctcca gcgggcatcc ccatcacgtc cgaaagaatg
3961 aattctggaa tggtgagacc ttcactggta aattggcaga ccaagcatca aaagcaaacc
4021 taatgtttga ggaagggaaa cacatgacac cagtgtatac agcagcactc aaggacgagc
4081 tagtcaagac tgagaaaatc tatggaaaga tcaagaagag actgctctgg ggctctgact
4141 tgtccaccat gatccggtgc gctaggtcat ttggtgggct catggacgag atgaaggcac
4201 actgcatatc actcccagta cgagttggca tgaatatgaa tgaagatggc ccaataatat
4261 ttgaaaaaca ttccagatac aaataccact atgatgcaga ctactctcgt tgggattcaa
4321 cacaacagag ggcagtacta gcagcagcct tggaaatcat ggtcagattc tctgcagaac
4381 cacaattgac acaaatagtc gctgaggatc tgttggcccc tagtgtagta gatgtaggag
4441 actttaaaat cacaataaat gaagggctcc catctggtgt gccatgcact tctcaatgga
4501 actccatcgc acactggctg ctaactctct gtgccttgtc tgaagtcacc aaactgtccc
4561 ctgacattat acaagcaaat tccatgttct cattttacgg tgatgacgag attgtcagca
4621 ccgacataaa attggaccct gaacagttaa ccgccaaatt gaaggagtac ggcctgaaac
4681 caacccgccc agacaagacc gagggacccc tgatcatcag tgaagatttg aacggactca
4741 ctttcctccg aaggacggtg actcgtgacc cagctggctg gtttggaaaa ctggaccaaa
4801 gctcaattct gaggcagatg tactggacta gaggaccaaa tcatgaagac cccaatgaga
4861 caatgatacc ccattctcaa agacctatac agctcatggc actgcttggt gaagcctctc
4921 ttcacggacc ctctttctat agtaaaatca gtaaattggt cataactgaa ctcaaagaag
4981 gtgggatgga cttttacgtg ccaaggcagg aacccatgtt caggtggatg aggttttctg
5041 acttgagcac gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg
5101 tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc tcgtaccaga ggtcaacaat
5161 gaggttatgg ctttggagcc cgttgttggt gccgctattg cggcacctgt agcgggccaa
5221 caaaatgtaa ttgacccctg gattagaaat aattttgtac aagcccctgg tggggagttt
5281 acagtatccc ctagaaacgc tccaggtgaa atactatgga gcgcgcccct aggtcctgac
5341 ctaaatccct acctatccca tttggccaga atgtacaatg gttatgcagg tggttttgaa
5401 gtgcaggtaa ttctcgcggg gaacgcgttc accgccggga agatcatatt tgcagcagtc
5461 ccaccaaatt ttccaactga aggcttaagt cctagccagg tcactatgtt cccccatata
5521 atagtagatg ttagacaatt agaacctgtg ctgattccct tacccgatgt caggaataat
5581 ttctatcatt acaatcagtc aaatgattcc actattaagt tgatagcaat gttgtataca
5641 ccacttaggg ctaataatgc tggggatgat gttttcacag tttcgtgccg agttctcacg
5701 aggccatccc ccgattttga tttcatattt ttagtgccac ccacagttga gtcaagaact
5761 aaaccattct ctgtcccagt tttaactgtt gaggagatga ccaattcaag attccccatt
5821 cctttggaaa agttgttcac gggccccagc agtgcctttg ttgttcaacc acaaaacggc
5881 aggtgcacaa ctgatggcgt gctcctaggc accacccaac tgtctcctgt caacatctgc
5941 accttcagag gggatgtcac ccacatcaca ggtagtcgca actacacaat gaatttggct
6001 tctcaaaatt ggaacaacta tgacccaaca gaagaaatcc cagcccctct aggaactcca
6061 gattttgtgg ggaagattca aggtatgctc acccaaacca caaggacaga tggttcaaca
6121 cgcggccaca aagctacagt gtacactggg agcgccgact ttgctccaaa actgggtaga
6181 gttcaatttg aaactgacac agaccatgat tttgaagcta atcaaaacac aaagttcacc
6241 ccagtcggtg tcatccaaga tggtagcacc acccaccgaa acgaacccca acagtgggtg
6301 ctcccaagtt actcaggcag aaacactcac aacgtacatc tggcccccgc tgtagccccc
6361 accttcccgg gtgagcaact tctcttcttc agatccacca tgcccggatg cagcgggtac
6421 cccaacatgg atttggactg tctgctcccc caggaatggg tacagtactt ctaccaagag
6481 gcagccccag cacaatctga tgtggctctg ctaagatttg tgaatccaga cacaggtagg
6541 gttttgtttg agtgcaagct tcacaaatca ggctatgtta cagtggctca cactggccaa
6601 catgatttgg ttatcccccc caatggttac tttaggtttg actcctgggt caaccagttc
6661 tacacgcttg cccccatggg aaatggaacg gggcgtagac gtgtagtata atggctggag
6721 ctttctttgc tggattggca tctgatgtcc ttggctctgg acttggttcc cttatcaatg
6781 ctggggctgg ggccatcaac caaaaagttg agtttgaaaa taacagaaaa ttgcaacaag
6841 catccttcca atttagcagc aatctgcaac aggcttcctt tcaacatgat aaagagatgc
6901 tccaagcaca aattgaggcc accaaaaagc tacaacagga aatgatgaaa gttaagcagg
6961 caatgctcct agagggtggg ttctctgaga cagatgcagc ccgcggggca attaacgccc
7021 ccatgacaaa agctttggac tggagcggga caaggtactg ggctcccgat gctaggacta
7081 caacatacaa tgcaggccgc ttttccaccc ctcaaccatc gggggcactg ccaggaagag
7141 ctaatcttag ggatgctgtc cctgctcggg gatcctccaa caaatcttct aactcttcta
7201 ctgccacctc tgtgtattca aatcaaactg tttcaacgag acttggttct acagctggtt
7261 ctggaaccag tgtctcgagc ctcccgtcaa ctgcaaggac taggagctgg gttgaggatc
7321 aaagtaggaa tttgtcacct ttcatgaggg gggcccacaa catatcattt gtcaccccac
7381 catctagcag atcctctagc caaggcacag tctcaaccgt gcctaaagag attttggact
7441 cctggactgg cgcttttaac acgcgcaggc agcctctctt cgctcacatt cgtaagcaag
7501 gggagtcacg ggtgtaatgt g
//