Typing tool
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Typing tool
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Complete norovirus genomes
| MZ478136 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5095
ORF2: 5076..6698
ORF3: 6698..7504
LOCUS MZ478136 7537 bp RNA linear VRL 07-FEB-2022
DEFINITION Norovirus GII isolate G4_11 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MZ478136
VERSION MZ478136.1
DBLINK BioProject: PRJNA592261
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE High prevalence and diversity of caliciviruses in a community
setting determined by a metagenomic approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7537)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia
Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col.
Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT ##Assembly-Data-START##
Assembly Method :: SPADES v. 3.13.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7537
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G4_11"
/isolation_source="stool"
/host="Homo sapiens; Stool of a male infant of 11 months
old"
/db_xref="taxon:122929"
/geo_loc_name="Mexico: Morelos,Xoxocotla"
/collection_date="17-Mar-2016"
/note="genotype: GII.P16|GII.4"
gene <1..5095
/gene="ORF1"
CDS <1..5095
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QXF25895.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEGPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNVLATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK
HARIRYYVKCAQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLTQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2620
/gene="ORF1"
/product="p22"
mat_peptide 2621..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6698
/gene="ORF2"
CDS 5076..6698
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QXF25896.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6698..7504
/gene="ORF3"
CDS 6698..7504
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QXF25897.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSNKSS
NSSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKQGESRV"
ORIGIN
1 gatggcgtct aacgacgcta ccgttgccgt tgcttgcaac aacaacaacg acaaggaaaa
61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag ccctcggggc
121 taggcccaaa cagcctgccc cgagagacga accacaaaag cccccaagac caccaactcc
181 cgagttggtc aagaggatac cccctcctcc acctaatggc gaagaagaag aaggaccagt
241 cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagtccccca
301 accggacgtg gccaacacag cattcagcgt tccaccattg agcttgagag aaaacaggga
361 ggccaaggaa ccgctaacag gggcaatact agagatgtgg gatggagaga tataccacta
421 tggcctgtac gtggagaaag gcttagtgtt gggtgtgcat aaaccacctg cagccataag
481 catggcaaga gtggaactga cgccgctgtc attgtactgg cgtgtggtgt acactcccca
541 atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgttcc cttacactgc
601 ctttgacaac aattgctatg ctttttgctg ctgggtgttg gacctcaatg actcatggct
661 tagcaggagg atggtgcaaa gaacaacggg cttcttcaga ccttaccaag agtggaacag
721 aaaacccctg cctaccatgg atgactccaa aattaagaag gtggcaaata tattcctatg
781 ttcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa taaaaccatt
841 aaacatattg aatgtcttgg caacgtgtga ctggacgttt gccggaatag tggagtctct
901 gatattactt gctgaactct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat
961 cgctccctta ctcggggact acgagttgca agggccagaa gacctcgccg ttgaactcgt
1021 acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga aaattggaaa
1081 aatgttgtcc tcagcagcat caacactcag ggcttgcaaa gatcttggtg cctatggctt
1141 agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct
1201 agccatggtg agggccatag aggatgccgt actagatctt gaggcaatag aaaataatca
1261 catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa cactggacat
1321 ggaggaggag aaagccagaa ggttgtccac gaaatctgca tcccctgaca tagttgggac
1381 aatcaacgcc ctgctggctc gaatagcagc ggccaggtca ttagtccata gggccaagga
1441 ggagctatct agcaggatga gaccagtagt tgttatgata tctggcaaac caggaatagg
1501 caaaacccat ctggccaggg aggtggcaag aaaggtggca tccactctca caggggatca
1561 aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggtgagag
1621 agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc ttcgcataca
1681 agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa ataagggaaa
1741 agtctttgac agtgaagtca taataattac aacaaacctt gccaacccag ccccacttga
1801 ttatgtcaac tttgaggcct gctccaggag aattgacttc ctggtgtacg ctgaggcacc
1861 agaagtagaa aaggcaaaac gggactttcc tggtcagcca gatatgtgga aggacgcctt
1921 caaatcggac ttttcacata tcaagctaca gcttgcacct caaggcggct ttgacaagaa
1981 tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggct ctctaattgc
2041 ccgtgcatca ggcctactgc atgagaggat ggatgaattt gaactccaag gtcccacaat
2101 caccaccttt aatttcgacc ggaacagaat cacagcattc agacaattgg ctgcagaaaa
2161 caagtatgga ttggtggata ccatgaaagt tggcaatcaa ctaaaaggag tgaaaaccat
2221 ggaagaactc aaacaagcaa tcaggaatgt gaccatcaag aggtgccaga tcatctacgg
2281 tggctccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa
2341 gaacacctct gtgcagacca acaacgagtt ggccggggcc ctgcaccatc tcaaacatgc
2401 ccgaatcagg tactatgtca aatgtgcgca agaagcagtc tattccatta tacaaattgc
2461 cggcgctgcg tttgtcacca cgcgcattgc acgccgcatg aacatacaag aactctggtc
2521 gaagccacaa ttagatcaaa atgagtcaga gactaaggaa gaggccccca agttagaaga
2581 tgacgagttc atcatatctt ctaaggacat caaggaggaa gggaagaagg gcaaaaacaa
2641 gactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg atgaggagta
2701 tgacgagtac aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct
2761 tcaagacaga gacaggtact atgaggagct cgccattgcc aaggccacag aagaagactt
2821 ctgtgaagag gaggagatca aaatccgtca gagaattttt cgccccacca ggaaacaaag
2881 aaaggaagag agggccacat tagggctagt aacaggttca gagatcagaa aaagaaaccc
2941 tgatgacttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa
3001 tgagaaactg gactttgagg cccccccaag catatggtct aggattgtga gctttggttc
3061 tggctggggc ttctgggtgt caccaagcct gttcataaca tcaactcatg taatccccgc
3121 aggcataaca gaagcatttg gagtccccat caaacaaatt cagatccaca aatcaggtga
3181 attttgccga ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgattttgga
3241 agaaggtgcg cctgaaggca ccgtggcaac tgtgctcatc aaacgcccca ccggagagct
3301 catgcctctt gcagccagaa tgggaacaca tgcaaccatg agaattcaag gccgcatggt
3361 tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac
3421 aactcctggt gactgtggct gtccttacat ctataaaagg ggcaatgact atatagtcat
3481 tggggtgcac actgcagcag cccgtggtgg gaacaccgtc atctgtgcca cacagggaag
3541 tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacctat
3601 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa
3661 cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgcg atccgcgtgt
3721 taagggtggg ccctccttgc agcaggtaat gagagaccag ttgaagccat tcactgaacc
3781 caggggcaaa cctccaagac caagtgtatt ggaagcagcc aaacaaacca ttatcaatgt
3841 cctcgaacaa accctggacc ctccacaaaa atggacatac gcacaggcgt gtgcctcact
3901 tgacaaaacc acctccagcg ggcatcccca tcacgtccga aagaatgaat tctggaatgg
3961 tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga
4021 agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag tcaagactga
4081 gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat
4141 ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact
4201 cccagtacga gttggcatga atatgaatga agatggccca ataatatttg aaaaacattc
4261 cagatacaaa taccactatg atgcagacta ctctcgttgg gattcaacac aacagagggc
4321 agtactagca gcagccttgg aaatcatggt cagattctct gcagaaccac aattgacaca
4381 aatagtcgct gaggatctgt tggcccctag tgtagtagat gtaggagact ttaaaatcac
4441 aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact ccatcgcaca
4501 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca
4561 agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt
4621 ggaccctgaa cagttaaccg ccaaattgaa ggagtacggc ctgaaaccaa cccgcccaga
4681 caagaccgag ggacccctga tcatcagtga agatttgaac ggactcactt tcctccgaag
4741 gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagct caattctgag
4801 gcagatgtac tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca
4861 ttctcaaaga cctatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc
4921 tttctatagt aaaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt
4981 ttacgtgcca aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgcca
5101 acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag gttatggctt
5161 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5221 acccctggat tagaaataat tttgtacaag cccctggtgg ggagtttaca gtatccccta
5281 gaaacgctcc aggtgaaata ctatggagcg cgcccctagg tcctgaccta aatccctacc
5341 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5401 tcgcggggaa cgcgttcacc gccgggaaga tcatatttgc agcagtccca ccaaattttc
5461 caactgaagg cttaagtcct agccaggtca ctatgttccc ccatataata gtagatgtta
5521 gacaattaga acctgtgctg attcccttac ccgatgtcag gaataatttc tatcattaca
5581 atcagtcaaa tgattccact attaagttga tagcaatgtt gtatacacca cttagggcta
5641 ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgagg ccatcccccg
5701 attttgattt catattttta gtgccaccca cagttgagtc aagaactaaa ccattctctg
5761 tcccagtttt aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt
5821 tgttcacggg ccccagcagt gcctttgttg ttcaaccaca aaacggcagg tgcacaactg
5881 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagagggg
5941 atgtcaccca catcacaggt agtcgcaact acacaatgaa tttggcttct caaaattgga
6001 acaactatga cccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga
6061 agattcaagg tatgctcacc caaaccacaa ggacagatgg ttcaacacgc ggccacaaag
6121 ctacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa
6181 ctgacacaga ccatgatttt gaagctaatc aaaacacaaa gttcacccca gtcggtgtca
6241 tccaagatgg tagcaccacc caccgaaacg aaccccaaca gtgggtgctc ccaagttact
6301 caggcagaaa cactcacaac gtacatctgg cccccgctgt agcccccacc ttcccgggtg
6361 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6421 tggactgtct gctcccccag gaatgggtac agtacttcta ccaagaggca gccccagcac
6481 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6541 gcaagcttca caaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta
6601 tcccccccaa tggttacttt aggtttgact cctgggtcaa ccagttctac acgcttgccc
6661 ccatgggaaa tggaacgggg cgtagacgtg tagtataatg gctggagctt tctttgctgg
6721 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc
6781 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6841 tagcagcaat ctgcaacagg cttcctttca acatgataaa gagatgctcc aagcacaaat
6901 tgaggccacc aaaaagctac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga
6961 gggtgggttc tctgagacag atgcagcccg cggggcaatt aacgccccca tgacaaaagc
7021 tttggactgg agcgggacaa ggtactgggc tcccgatgct aggactacaa catacaatgc
7081 aggccgcttt tccacccctc aaccatcggg ggcactgcca ggaagagcta atcttaggga
7141 tgctgtccct gctcggggat cctccaacaa atcttctaac tcttctactg ccacctctgt
7201 gtattcaaat caaactgttt caacgagact tggttctaca gctggttctg gaaccagtgt
7261 ctcgagcctc ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt
7321 gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat ctagcagatc
7381 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc
7441 ttttaacacg cgcaggcagc ctctcttcgc tcacattcgt aagcaagggg agtcacgggt
7501 gtaatgtgaa aagacaaaat tgattatctt tcttttt
//