Typing tool
|
Complete norovirus genomes
MZ478136 | GII.4 Sydney | ||
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GII.P16 |
ORF1: 1..5095 ORF2: 5076..6698 ORF3: 6698..7504LOCUS MZ478136 7537 bp RNA linear VRL 07-FEB-2022 DEFINITION Norovirus GII isolate G4_11 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION MZ478136 VERSION MZ478136.1 DBLINK BioProject: PRJNA592261 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7537) AUTHORS Rivera-Gutierrez,X. and Taboada,B. TITLE High prevalence and diversity of caliciviruses in a community setting determined by a metagenomic approach JOURNAL Unpublished REFERENCE 2 (bases 1 to 7537) AUTHORS Rivera-Gutierrez,X. and Taboada,B. TITLE Direct Submission JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: SPADES v. 3.13.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7537 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="G4_11" /isolation_source="stool" /host="Homo sapiens; Stool of a male infant of 11 months old" /db_xref="taxon:122929" /country="Mexico: Morelos,Xoxocotla" /collection_date="17-Mar-2016" /note="genotype: GII.P16|GII.4" gene <1..5095 /gene="ORF1" CDS <1..5095 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="QXF25895.1" /translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ PAPRDEPQKPPRPPTPELVKRIPPPPPNGEEEEGPVIRYEVKSGISGLPELTTVPQPD VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK IKPLNILNVLATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREV ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM EELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLK HARIRYYVKCAQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV ATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNG ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST QQRAVLAAALEIMVRFSAEPQLTQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM FRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..991 /gene="ORF1" /product="p48" mat_peptide 992..2089 /gene="ORF1" /product="NTPase" mat_peptide 2090..2620 /gene="ORF1" /product="p22" mat_peptide 2621..3019 /gene="ORF1" /product="VPg" mat_peptide 3020..3562 /gene="ORF1" /product="Pro" mat_peptide 3563..5092 /gene="ORF1" /product="RdRp" gene 5076..6698 /gene="ORF2" CDS 5076..6698 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QXF25896.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV" gene 6698..7504 /gene="ORF3" CDS 6698..7504 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QXF25897.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSNKSS NSSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKQGESRV" ORIGIN 1 gatggcgtct aacgacgcta ccgttgccgt tgcttgcaac aacaacaacg acaaggaaaa 61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag ccctcggggc 121 taggcccaaa cagcctgccc cgagagacga accacaaaag cccccaagac caccaactcc 181 cgagttggtc aagaggatac cccctcctcc acctaatggc gaagaagaag aaggaccagt 241 cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagtccccca 301 accggacgtg gccaacacag cattcagcgt tccaccattg agcttgagag aaaacaggga 361 ggccaaggaa ccgctaacag gggcaatact agagatgtgg gatggagaga tataccacta 421 tggcctgtac gtggagaaag gcttagtgtt gggtgtgcat aaaccacctg cagccataag 481 catggcaaga gtggaactga cgccgctgtc attgtactgg cgtgtggtgt acactcccca 541 atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgttcc cttacactgc 601 ctttgacaac aattgctatg ctttttgctg ctgggtgttg gacctcaatg actcatggct 661 tagcaggagg atggtgcaaa gaacaacggg cttcttcaga ccttaccaag agtggaacag 721 aaaacccctg cctaccatgg atgactccaa aattaagaag gtggcaaata tattcctatg 781 ttcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa taaaaccatt 841 aaacatattg aatgtcttgg caacgtgtga ctggacgttt gccggaatag tggagtctct 901 gatattactt gctgaactct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat 961 cgctccctta ctcggggact acgagttgca agggccagaa gacctcgccg ttgaactcgt 1021 acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga aaattggaaa 1081 aatgttgtcc tcagcagcat caacactcag ggcttgcaaa gatcttggtg cctatggctt 1141 agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct 1201 agccatggtg agggccatag aggatgccgt actagatctt gaggcaatag aaaataatca 1261 catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa cactggacat 1321 ggaggaggag aaagccagaa ggttgtccac gaaatctgca tcccctgaca tagttgggac 1381 aatcaacgcc ctgctggctc gaatagcagc ggccaggtca ttagtccata gggccaagga 1441 ggagctatct agcaggatga gaccagtagt tgttatgata tctggcaaac caggaatagg 1501 caaaacccat ctggccaggg aggtggcaag aaaggtggca tccactctca caggggatca 1561 aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggtgagag 1621 agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc ttcgcataca 1681 agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa ataagggaaa 1741 agtctttgac agtgaagtca taataattac aacaaacctt gccaacccag ccccacttga 1801 ttatgtcaac tttgaggcct gctccaggag aattgacttc ctggtgtacg ctgaggcacc 1861 agaagtagaa aaggcaaaac gggactttcc tggtcagcca gatatgtgga aggacgcctt 1921 caaatcggac ttttcacata tcaagctaca gcttgcacct caaggcggct ttgacaagaa 1981 tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggct ctctaattgc 2041 ccgtgcatca ggcctactgc atgagaggat ggatgaattt gaactccaag gtcccacaat 2101 caccaccttt aatttcgacc ggaacagaat cacagcattc agacaattgg ctgcagaaaa 2161 caagtatgga ttggtggata ccatgaaagt tggcaatcaa ctaaaaggag tgaaaaccat 2221 ggaagaactc aaacaagcaa tcaggaatgt gaccatcaag aggtgccaga tcatctacgg 2281 tggctccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa 2341 gaacacctct gtgcagacca acaacgagtt ggccggggcc ctgcaccatc tcaaacatgc 2401 ccgaatcagg tactatgtca aatgtgcgca agaagcagtc tattccatta tacaaattgc 2461 cggcgctgcg tttgtcacca cgcgcattgc acgccgcatg aacatacaag aactctggtc 2521 gaagccacaa ttagatcaaa atgagtcaga gactaaggaa gaggccccca agttagaaga 2581 tgacgagttc atcatatctt ctaaggacat caaggaggaa gggaagaagg gcaaaaacaa 2641 gactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg atgaggagta 2701 tgacgagtac aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct 2761 tcaagacaga gacaggtact atgaggagct cgccattgcc aaggccacag aagaagactt 2821 ctgtgaagag gaggagatca aaatccgtca gagaattttt cgccccacca ggaaacaaag 2881 aaaggaagag agggccacat tagggctagt aacaggttca gagatcagaa aaagaaaccc 2941 tgatgacttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa 3001 tgagaaactg gactttgagg cccccccaag catatggtct aggattgtga gctttggttc 3061 tggctggggc ttctgggtgt caccaagcct gttcataaca tcaactcatg taatccccgc 3121 aggcataaca gaagcatttg gagtccccat caaacaaatt cagatccaca aatcaggtga 3181 attttgccga ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgattttgga 3241 agaaggtgcg cctgaaggca ccgtggcaac tgtgctcatc aaacgcccca ccggagagct 3301 catgcctctt gcagccagaa tgggaacaca tgcaaccatg agaattcaag gccgcatggt 3361 tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac 3421 aactcctggt gactgtggct gtccttacat ctataaaagg ggcaatgact atatagtcat 3481 tggggtgcac actgcagcag cccgtggtgg gaacaccgtc atctgtgcca cacagggaag 3541 tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacctat 3601 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa 3661 cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgcg atccgcgtgt 3721 taagggtggg ccctccttgc agcaggtaat gagagaccag ttgaagccat tcactgaacc 3781 caggggcaaa cctccaagac caagtgtatt ggaagcagcc aaacaaacca ttatcaatgt 3841 cctcgaacaa accctggacc ctccacaaaa atggacatac gcacaggcgt gtgcctcact 3901 tgacaaaacc acctccagcg ggcatcccca tcacgtccga aagaatgaat tctggaatgg 3961 tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga 4021 agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag tcaagactga 4081 gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat 4141 ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact 4201 cccagtacga gttggcatga atatgaatga agatggccca ataatatttg aaaaacattc 4261 cagatacaaa taccactatg atgcagacta ctctcgttgg gattcaacac aacagagggc 4321 agtactagca gcagccttgg aaatcatggt cagattctct gcagaaccac aattgacaca 4381 aatagtcgct gaggatctgt tggcccctag tgtagtagat gtaggagact ttaaaatcac 4441 aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact ccatcgcaca 4501 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca 4561 agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt 4621 ggaccctgaa cagttaaccg ccaaattgaa ggagtacggc ctgaaaccaa cccgcccaga 4681 caagaccgag ggacccctga tcatcagtga agatttgaac ggactcactt tcctccgaag 4741 gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagct caattctgag 4801 gcagatgtac tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca 4861 ttctcaaaga cctatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc 4921 tttctatagt aaaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt 4981 ttacgtgcca aggcaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg 5041 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgcca 5101 acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag gttatggctt 5161 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg 5221 acccctggat tagaaataat tttgtacaag cccctggtgg ggagtttaca gtatccccta 5281 gaaacgctcc aggtgaaata ctatggagcg cgcccctagg tcctgaccta aatccctacc 5341 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc 5401 tcgcggggaa cgcgttcacc gccgggaaga tcatatttgc agcagtccca ccaaattttc 5461 caactgaagg cttaagtcct agccaggtca ctatgttccc ccatataata gtagatgtta 5521 gacaattaga acctgtgctg attcccttac ccgatgtcag gaataatttc tatcattaca 5581 atcagtcaaa tgattccact attaagttga tagcaatgtt gtatacacca cttagggcta 5641 ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgagg ccatcccccg 5701 attttgattt catattttta gtgccaccca cagttgagtc aagaactaaa ccattctctg 5761 tcccagtttt aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt 5821 tgttcacggg ccccagcagt gcctttgttg ttcaaccaca aaacggcagg tgcacaactg 5881 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagagggg 5941 atgtcaccca catcacaggt agtcgcaact acacaatgaa tttggcttct caaaattgga 6001 acaactatga cccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga 6061 agattcaagg tatgctcacc caaaccacaa ggacagatgg ttcaacacgc ggccacaaag 6121 ctacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa 6181 ctgacacaga ccatgatttt gaagctaatc aaaacacaaa gttcacccca gtcggtgtca 6241 tccaagatgg tagcaccacc caccgaaacg aaccccaaca gtgggtgctc ccaagttact 6301 caggcagaaa cactcacaac gtacatctgg cccccgctgt agcccccacc ttcccgggtg 6361 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt 6421 tggactgtct gctcccccag gaatgggtac agtacttcta ccaagaggca gccccagcac 6481 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt 6541 gcaagcttca caaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta 6601 tcccccccaa tggttacttt aggtttgact cctgggtcaa ccagttctac acgcttgccc 6661 ccatgggaaa tggaacgggg cgtagacgtg tagtataatg gctggagctt tctttgctgg 6721 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc 6781 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt 6841 tagcagcaat ctgcaacagg cttcctttca acatgataaa gagatgctcc aagcacaaat 6901 tgaggccacc aaaaagctac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga 6961 gggtgggttc tctgagacag atgcagcccg cggggcaatt aacgccccca tgacaaaagc 7021 tttggactgg agcgggacaa ggtactgggc tcccgatgct aggactacaa catacaatgc 7081 aggccgcttt tccacccctc aaccatcggg ggcactgcca ggaagagcta atcttaggga 7141 tgctgtccct gctcggggat cctccaacaa atcttctaac tcttctactg ccacctctgt 7201 gtattcaaat caaactgttt caacgagact tggttctaca gctggttctg gaaccagtgt 7261 ctcgagcctc ccgtcaactg caaggactag gagctgggtt gaggatcaaa gtaggaattt 7321 gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat ctagcagatc 7381 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc 7441 ttttaacacg cgcaggcagc ctctcttcgc tcacattcgt aagcaagggg agtcacgggt 7501 gtaatgtgaa aagacaaaat tgattatctt tcttttt //