Typing tool
|
Complete norovirus genomes
MZ478134 | GII.17 | ||
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GII.P17 |
ORF1: 1..5070 ORF2: 5051..6673 ORF3: 6673..7441LOCUS MZ478134 7441 bp RNA linear VRL 07-FEB-2022 DEFINITION Norovirus GII isolate G2_12 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION MZ478134 VERSION MZ478134.1 DBLINK BioProject: PRJNA592261 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7441) AUTHORS Rivera-Gutierrez,X. and Taboada,B. TITLE High prevalence and diversity of caliciviruses in a community setting determined by a metagenomic approach JOURNAL Unpublished REFERENCE 2 (bases 1 to 7441) AUTHORS Rivera-Gutierrez,X. and Taboada,B. TITLE Direct Submission JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: SPADES v. 3.13.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7441 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="G2_12" /isolation_source="stool" /host="Homo sapiens; Stool of a male infant of 12 months old" /db_xref="taxon:122929" /country="Mexico: Morelos,Xoxocotla" /collection_date="02-Mar-2016" /note="genotype: GII.P17|GII.17" gene <1..5070 /gene="ORF1" CDS <1..5070 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QXF25889.1" /translation="GGYNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGEAKQIQ KPPRPPTPELVKRIPPPPPNGDDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPP LSQREVGEAKEPLPGSILEMWDGEIYHYGLYVEQGHVLGVHKPPAAISLAKIEITPLS LYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRT TGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNIL ATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVM GGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAM VRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGT INALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSG DQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIE NKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPD MWKDHFRSDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDE FELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNI SIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKC FQEAIYSLLQITGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPKDEDDLT VDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD RDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNP DDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVI PKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRT TGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYMYKRG NDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTK TKFWRPSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVL ESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLA DQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAF GGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEA ALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWL LTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMI PHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSD LSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..960 /gene="ORF1" /product="p48" mat_peptide 961..2058 /gene="ORF1" /product="NTPase" mat_peptide 2059..2595 /gene="ORF1" /product="p22" mat_peptide 2596..2994 /gene="ORF1" /product="VPg" mat_peptide 2995..3537 /gene="ORF1" /product="Pro" mat_peptide 3538..5067 /gene="ORF1" /product="RdRp" gene 5051..6673 /gene="ORF2" CDS 5051..6673 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QXF25890.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQSNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6673..>7441 /gene="ORF3" CDS 6673..>7441 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QXF25891.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLLAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPFAPQSKPAKPRSLAPSSSSSSVYSMQTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGE" ORIGIN 1 ggaggataca ataacaacga caaggaaaaa tcttcaagtg acagcttgtt tgctaacatg 61 tctgtcactt ttaagaaagc cctcggggcg cggtctaaac aaccgccccc gggagaagca 121 aaacaaatac aaaaaccacc aaggccaccg acaccggaat tggtgaagag aatacctcca 181 cccccaccca atggcgatga tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct 241 gggctgcccg acctaacaac tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt 301 cccccactta gccagagaga agtcggcgaa gctaaagaac cgctgcctgg ctccattctg 361 gaaatgtggg atggtgagat ctaccactat gggctgtatg ttgagcaggg gcatgtgctc 421 ggagtacaca aaccacctgc tgcaataagc cttgccaaaa ttgaaataac accgctgtct 481 ctctactgga gagtggtcta cactccccag tatttgatag atccaggaac tcttaagaac 541 ttaagtggag agactttccc atacacggcc tttgacaaca actgttatgc cttctgttgt 601 tgggtcctag acctcaacga ctcctggctt agcaggagaa tgatccaaag aacaactgga 661 ttcttcaaac cttatcagga ttggaacaga aaacctttac caaccatgga tgaaccgaaa 721 atcaagaagg ccgcgaatgc tgtcctatgc gctctctcct cactcttcac tagacccatt 781 aaggacatca ttggaaagct tagaccactg aacattctta atatactggc aacctgcgat 841 tggacttttg caggcatagt ggaatccatg atccttcttg ctgaactctt tggggtgttc 901 tggacacccc cagatgtgtc tgcgatgatt gctcccttac tcggtgacta cgagatgcaa 961 ggccccgaag acctggccgt ggaacttgtg cccgtggtga tgggaggaat aggtctggtg 1021 ttaggattca ccaaagaaaa gatcggcaag atgctttcat cagctgcgac tacacttagg 1081 gcctgcaagg atctaggatc ttatggattg gagatactca aattggtcat gaagtggttc 1141 ttccccaaga aggaggaggc taacgaacta gccatggtga gggccattga ggatgcagtc 1201 ctggatttgg aggcaataga aaacaaccac atgaccaccc ttctcaagga taaagatagc 1261 ctggccacat acatgaggac tcttgacttg gaagaagaga aagcaaggaa actgtcaacc 1321 aaatcggcgt cacctgacat cgtgggtaca ataaacgcat tattggctag gatagcagcc 1381 gccaggtcac tggtccacaa ggctaaggag gagctctcga gcaggcagag acctgttgtt 1441 gtaatgatat caggtagacc aggtataggg aagacccatc tggccagaga gctagccaag 1501 aaagttgcgt caacactgtc aggcgaccaa aggattggac tggtacctag aaatggcgtc 1561 gaccattggg acgcctacaa gggagaaagg gtggttctgt gggatgatta tggtatgagc 1621 aaccctatac aggacgcact gaggctccaa gaattggctg acacctgtcc tctgacccta 1681 aattgtgata ggattgaaaa caaaggaaaa gtgttcgaca gtgatgccat aattataaca 1741 accaatcttg caaacccagc accactagac tatgtcaact ttgaggcctg ctctagacgc 1801 atagacttct tggtgtatgc agacgcacct gacattgaga aggctaagcg tgacttccct 1861 ggccaaccag atatgtggaa agaccatttc agatcagact tctcacacat taaacttcag 1921 ctggcaccac agggaggttt tgacaaaaat ggcaacaccc cacatggcaa aggtgtggtg 1981 aagtccctga cgattggttc tctaatcgcc agggcctccg gcttgctcca cgagagaatg 2041 gatgaattcg agctccaagg ctctgacctg ccaaccttca attttgaccg caacaaagtt 2101 gccgccttca gacaattagc agctgaaaac aaatatggtc ttatggacac actgagggtc 2161 ggcaaccaac tgaaaagtgt taagaccctg gatgaactga agcaggccat aaagaacatc 2221 agtatcaaga agtgtcagat agtgtataat ggatgcacct ataccatgga atctgatggg 2281 aggggcaagg ttgtggttga aaaggtacaa aacgcaacag ttcaaaccaa caatgaactt 2341 gtaggggcgc tccaccacct gagatctgca aggataagat actatgttaa gtgtttccaa 2401 gaagccattt actctctact ccaaattact ggtgcagcct tcgtcacctc acgcatcgtg 2461 aggcgcatga acatatcaaa cctctggtcg aagccaccca tcgaggaggg tgatgagcct 2521 gaagacagag gaggatgccc caagcccaag gatgaagatg acctcactgt tgactctaga 2581 gacattaaag tggaagggaa gaagggtaag aacaagtctg gccggggcaa gaaacacaca 2641 gccttctctt ccaagggcct cagtgatgaa gagtacgatg agtacaagag aatcagagag 2701 gagaggaatg gcaaatactc aatagaggaa tacctccaag atagggacag atactatgaa 2761 gagcttgcca ttgctaaggc cactgaggag gacttctgtg aggaggagga gatcaaaatc 2821 cgccagagaa tcttccgacc caccaggaag cagcggaaag aggaaagggc cacgcttggg 2881 cttgttacag gatcagaaat cagaaagagg aatccagatg actttaaacc aaaaggaaaa 2941 ttgtgggctg atgacaacag gagcgtggat tacaatgaga ggatagattt tgaggctccc 3001 ccgagtgttt ggtctaggat agtcaacttt ggcacaggct ggggattctg ggtttctcca 3061 agtctcttta taacttcaac acacgtcata ccaaaaggaa tcactgaggc ctttggagtg 3121 cccataaacc aaatccaaat ccacaaatct ggagaatttt gccgcttgcg gtttccaaag 3181 ccaattagac cagacgtgag tgggatgatc ttggaagagg gcgcccctga aggcactgtt 3241 gtgtctattc tcatcaaaag gacaacaggg gagctgatgc ctcttgcagt cagaatgggg 3301 actcatgcca caatgaaaat ccaaggtaga acggtgggtg gtcagatggg tatgcttctc 3361 actggctcaa atgctaaaag catggatcta ggcacaacgc caggtgactg cggatgtcca 3421 tacatgtaca aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagctcgt 3481 ggaggcaaca cggtcatatg tgccacacag ggaagtgaag gtgaagccac tcttgaagga 3541 ggtgacaaca agggtaccta ttgtggggcc cccattttgg gacctggcaa tgcaccaaaa 3601 ttgagcacaa agacaaaatt ctggagaccc tctaacgcac cgcttcctcc aggtacttat 3661 gaaccagcat accttggtgg gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa 3721 gttatgagag accaacttaa accttttaca gagcccagag ggaagccacc aaacccaaat 3781 gtattagagt cagcaaagaa gactatcatc aatgttttgg aacaaaccat tgacccccct 3841 caaaagtggt catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac 3901 ccgcaccacg tccggaagaa tgactattgg agtggtgaat ccttcacagg aaaacttgca 3961 gatcaggctt caaaagcaaa tctcatgtat gaggaaggca agcacatgca accagtttac 4021 accgcagcac tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa 4081 agactcctgt ggggttctga cctctccaca atgattcgat gcgccagagc atttggtggt 4141 ctcatggatg aattcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg 4201 aatgaagatg gtcccataat atttgagaaa cactccagat acaggtacca ctatgatgct 4261 gattactccc gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc 4321 atggtgagat tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca 4381 ccaagtgtgg ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc 4441 gtgccttgca cctcgcaatg gaattctatt gcccactggt tacttacctt gtgtgccctt 4501 tctgaagtga caggattagg tcctgacatc atacaagcta actccatgta ctctttctat 4561 ggtgatgatg agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag 4621 ctcaaagaat atggccttaa acccactcgg cccgacaaaa ctgaggggcc gttggtgatt 4681 agtgaggacc tgaatgggtt gactttcctc cgccggacag tcacccgtga cccagcaggt 4741 tggtttggaa agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc 4801 aaccatgaag accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg 4861 gcactactag gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaatta 4921 gtcatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg 4981 ttcagatgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc 5041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg 5101 tctcgtacca gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat 5161 agccgcaccc gtcactggcc aaaataacat aattgacccc tggattagaa caaattttgt 5221 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt 5281 aaacttagag ttgggccctg atttgaaccc ttacttggct catttgtcaa ggatgtacaa 5341 tgggtatgct ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg 5401 aaagatcctc ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca 5461 gatcacaatg ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc 5521 actccctgat gttaggaata cattcttcca ttatagtaac cagtctaaca gccgcatgag 5581 attagtggct atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac 5641 tgtctcttgc agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc 5701 accttctgtt gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct 5761 cacaaattcg aggttcccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt 5821 gcaggtgcag tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca 5881 gttgctccca tctggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg 5941 tgacaggtgg cacatgcaac tgcaaaacct caatggcaca acatatgacc caactgatga 6001 tgtgccagcc ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca 6061 aagaaatgtg ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac 6121 ctatagcccc caatttgtcc ccaaattagg ttctgtcaat cttagaatta gtgataatga 6181 cgatttccaa ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg 6241 ccacccgttc agacaatggg aactaccaaa ctattcaggg gagcttacct tgaatatgaa 6301 tcttgccccc ccagttgctc caaattttcc tggtgaacaa ttgttattct tcaggtcttt 6361 cgtgccatgc tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg 6421 gatccaacac ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta 6481 tgtcaacccc gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat 6541 tactgtggct cactctggag actatcctct tgttgttccg gctaatggac actttagatt 6601 tgattcttgg gtaaatcagt tttactcact cgccccaatg ggaactggga acgggcgaag 6661 gagggctcag taatggcggg ggctttcatt gcaggattgg caggcgacat gctcacgtcg 6721 tctgtgggct cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa 6781 aacaacaaac aactccagtc tgcttccttt cagcacgata aagagatgct cctagcgcag 6841 gtgagggcga ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc 6901 gcaggcggct tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag 6961 gtgcttgact ggtctggcac tcgatactgg gcgcccaatt ccacaaagac aactggttat 7021 tcgggacaat tcacctcttc acctgtgcat atgtctagcc catttgctcc acaatcaaaa 7081 cctgcaaagc ctaggtctct agctccttcc tcttcttcta gcagtgtcta tagtatgcaa 7141 actcaatcta ctcatttaac atctggctct tctagtaatg cctcttctgc ctccacaaaa 7201 ttgacaaatt taagctctgg ctcctctcaa aacagaacag cagagtgggt aaatcaacag 7261 agaagtctta gccctttcat gagtggcgca cttaacatct cacatgtcac gccaccctca 7321 agtagggctt ccagttctgg gacggtctcg accgtgccca aggaagtttt ggactcctgg 7381 acgtctgcgt ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag 7441 t //