Typing tool
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Typing tool
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Complete norovirus genomes
| MZ478134 | GII.17 | |
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| GII.P17 |
ORF1: 1..5070
ORF2: 5051..6673
ORF3: 6673..7441
LOCUS MZ478134 7441 bp RNA linear VRL 07-FEB-2022
DEFINITION Norovirus GII isolate G2_12 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION MZ478134
VERSION MZ478134.1
DBLINK BioProject: PRJNA592261
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7441)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE High prevalence and diversity of caliciviruses in a community
setting determined by a metagenomic approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7441)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia
Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col.
Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT ##Assembly-Data-START##
Assembly Method :: SPADES v. 3.13.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7441
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G2_12"
/isolation_source="stool"
/host="Homo sapiens; Stool of a male infant of 12 months
old"
/db_xref="taxon:122929"
/geo_loc_name="Mexico: Morelos,Xoxocotla"
/collection_date="02-Mar-2016"
/note="genotype: GII.P17|GII.17"
gene <1..5070
/gene="ORF1"
CDS <1..5070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QXF25889.1"
/translation="GGYNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGEAKQIQ
KPPRPPTPELVKRIPPPPPNGDDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPP
LSQREVGEAKEPLPGSILEMWDGEIYHYGLYVEQGHVLGVHKPPAAISLAKIEITPLS
LYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRT
TGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNIL
ATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVM
GGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAM
VRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGT
INALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSG
DQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIE
NKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPD
MWKDHFRSDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDE
FELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNI
SIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKC
FQEAIYSLLQITGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPKDEDDLT
VDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD
RDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNP
DDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVI
PKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRT
TGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYMYKRG
NDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTK
TKFWRPSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVL
ESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLA
DQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAF
GGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEA
ALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMI
PHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSD
LSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..960
/gene="ORF1"
/product="p48"
mat_peptide 961..2058
/gene="ORF1"
/product="NTPase"
mat_peptide 2059..2595
/gene="ORF1"
/product="p22"
mat_peptide 2596..2994
/gene="ORF1"
/product="VPg"
mat_peptide 2995..3537
/gene="ORF1"
/product="Pro"
mat_peptide 3538..5067
/gene="ORF1"
/product="RdRp"
gene 5051..6673
/gene="ORF2"
CDS 5051..6673
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QXF25890.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQSNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6673..>7441
/gene="ORF3"
CDS 6673..>7441
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QXF25891.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLLAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPFAPQSKPAKPRSLAPSSSSSSVYSMQTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGE"
ORIGIN
1 ggaggataca ataacaacga caaggaaaaa tcttcaagtg acagcttgtt tgctaacatg
61 tctgtcactt ttaagaaagc cctcggggcg cggtctaaac aaccgccccc gggagaagca
121 aaacaaatac aaaaaccacc aaggccaccg acaccggaat tggtgaagag aatacctcca
181 cccccaccca atggcgatga tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct
241 gggctgcccg acctaacaac tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt
301 cccccactta gccagagaga agtcggcgaa gctaaagaac cgctgcctgg ctccattctg
361 gaaatgtggg atggtgagat ctaccactat gggctgtatg ttgagcaggg gcatgtgctc
421 ggagtacaca aaccacctgc tgcaataagc cttgccaaaa ttgaaataac accgctgtct
481 ctctactgga gagtggtcta cactccccag tatttgatag atccaggaac tcttaagaac
541 ttaagtggag agactttccc atacacggcc tttgacaaca actgttatgc cttctgttgt
601 tgggtcctag acctcaacga ctcctggctt agcaggagaa tgatccaaag aacaactgga
661 ttcttcaaac cttatcagga ttggaacaga aaacctttac caaccatgga tgaaccgaaa
721 atcaagaagg ccgcgaatgc tgtcctatgc gctctctcct cactcttcac tagacccatt
781 aaggacatca ttggaaagct tagaccactg aacattctta atatactggc aacctgcgat
841 tggacttttg caggcatagt ggaatccatg atccttcttg ctgaactctt tggggtgttc
901 tggacacccc cagatgtgtc tgcgatgatt gctcccttac tcggtgacta cgagatgcaa
961 ggccccgaag acctggccgt ggaacttgtg cccgtggtga tgggaggaat aggtctggtg
1021 ttaggattca ccaaagaaaa gatcggcaag atgctttcat cagctgcgac tacacttagg
1081 gcctgcaagg atctaggatc ttatggattg gagatactca aattggtcat gaagtggttc
1141 ttccccaaga aggaggaggc taacgaacta gccatggtga gggccattga ggatgcagtc
1201 ctggatttgg aggcaataga aaacaaccac atgaccaccc ttctcaagga taaagatagc
1261 ctggccacat acatgaggac tcttgacttg gaagaagaga aagcaaggaa actgtcaacc
1321 aaatcggcgt cacctgacat cgtgggtaca ataaacgcat tattggctag gatagcagcc
1381 gccaggtcac tggtccacaa ggctaaggag gagctctcga gcaggcagag acctgttgtt
1441 gtaatgatat caggtagacc aggtataggg aagacccatc tggccagaga gctagccaag
1501 aaagttgcgt caacactgtc aggcgaccaa aggattggac tggtacctag aaatggcgtc
1561 gaccattggg acgcctacaa gggagaaagg gtggttctgt gggatgatta tggtatgagc
1621 aaccctatac aggacgcact gaggctccaa gaattggctg acacctgtcc tctgacccta
1681 aattgtgata ggattgaaaa caaaggaaaa gtgttcgaca gtgatgccat aattataaca
1741 accaatcttg caaacccagc accactagac tatgtcaact ttgaggcctg ctctagacgc
1801 atagacttct tggtgtatgc agacgcacct gacattgaga aggctaagcg tgacttccct
1861 ggccaaccag atatgtggaa agaccatttc agatcagact tctcacacat taaacttcag
1921 ctggcaccac agggaggttt tgacaaaaat ggcaacaccc cacatggcaa aggtgtggtg
1981 aagtccctga cgattggttc tctaatcgcc agggcctccg gcttgctcca cgagagaatg
2041 gatgaattcg agctccaagg ctctgacctg ccaaccttca attttgaccg caacaaagtt
2101 gccgccttca gacaattagc agctgaaaac aaatatggtc ttatggacac actgagggtc
2161 ggcaaccaac tgaaaagtgt taagaccctg gatgaactga agcaggccat aaagaacatc
2221 agtatcaaga agtgtcagat agtgtataat ggatgcacct ataccatgga atctgatggg
2281 aggggcaagg ttgtggttga aaaggtacaa aacgcaacag ttcaaaccaa caatgaactt
2341 gtaggggcgc tccaccacct gagatctgca aggataagat actatgttaa gtgtttccaa
2401 gaagccattt actctctact ccaaattact ggtgcagcct tcgtcacctc acgcatcgtg
2461 aggcgcatga acatatcaaa cctctggtcg aagccaccca tcgaggaggg tgatgagcct
2521 gaagacagag gaggatgccc caagcccaag gatgaagatg acctcactgt tgactctaga
2581 gacattaaag tggaagggaa gaagggtaag aacaagtctg gccggggcaa gaaacacaca
2641 gccttctctt ccaagggcct cagtgatgaa gagtacgatg agtacaagag aatcagagag
2701 gagaggaatg gcaaatactc aatagaggaa tacctccaag atagggacag atactatgaa
2761 gagcttgcca ttgctaaggc cactgaggag gacttctgtg aggaggagga gatcaaaatc
2821 cgccagagaa tcttccgacc caccaggaag cagcggaaag aggaaagggc cacgcttggg
2881 cttgttacag gatcagaaat cagaaagagg aatccagatg actttaaacc aaaaggaaaa
2941 ttgtgggctg atgacaacag gagcgtggat tacaatgaga ggatagattt tgaggctccc
3001 ccgagtgttt ggtctaggat agtcaacttt ggcacaggct ggggattctg ggtttctcca
3061 agtctcttta taacttcaac acacgtcata ccaaaaggaa tcactgaggc ctttggagtg
3121 cccataaacc aaatccaaat ccacaaatct ggagaatttt gccgcttgcg gtttccaaag
3181 ccaattagac cagacgtgag tgggatgatc ttggaagagg gcgcccctga aggcactgtt
3241 gtgtctattc tcatcaaaag gacaacaggg gagctgatgc ctcttgcagt cagaatgggg
3301 actcatgcca caatgaaaat ccaaggtaga acggtgggtg gtcagatggg tatgcttctc
3361 actggctcaa atgctaaaag catggatcta ggcacaacgc caggtgactg cggatgtcca
3421 tacatgtaca aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagctcgt
3481 ggaggcaaca cggtcatatg tgccacacag ggaagtgaag gtgaagccac tcttgaagga
3541 ggtgacaaca agggtaccta ttgtggggcc cccattttgg gacctggcaa tgcaccaaaa
3601 ttgagcacaa agacaaaatt ctggagaccc tctaacgcac cgcttcctcc aggtacttat
3661 gaaccagcat accttggtgg gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa
3721 gttatgagag accaacttaa accttttaca gagcccagag ggaagccacc aaacccaaat
3781 gtattagagt cagcaaagaa gactatcatc aatgttttgg aacaaaccat tgacccccct
3841 caaaagtggt catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac
3901 ccgcaccacg tccggaagaa tgactattgg agtggtgaat ccttcacagg aaaacttgca
3961 gatcaggctt caaaagcaaa tctcatgtat gaggaaggca agcacatgca accagtttac
4021 accgcagcac tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa
4081 agactcctgt ggggttctga cctctccaca atgattcgat gcgccagagc atttggtggt
4141 ctcatggatg aattcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg
4201 aatgaagatg gtcccataat atttgagaaa cactccagat acaggtacca ctatgatgct
4261 gattactccc gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc
4321 atggtgagat tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca
4381 ccaagtgtgg ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc
4441 gtgccttgca cctcgcaatg gaattctatt gcccactggt tacttacctt gtgtgccctt
4501 tctgaagtga caggattagg tcctgacatc atacaagcta actccatgta ctctttctat
4561 ggtgatgatg agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag
4621 ctcaaagaat atggccttaa acccactcgg cccgacaaaa ctgaggggcc gttggtgatt
4681 agtgaggacc tgaatgggtt gactttcctc cgccggacag tcacccgtga cccagcaggt
4741 tggtttggaa agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc
4801 aaccatgaag accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg
4861 gcactactag gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaatta
4921 gtcatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg
4981 ttcagatgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc
5041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg
5101 tctcgtacca gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat
5161 agccgcaccc gtcactggcc aaaataacat aattgacccc tggattagaa caaattttgt
5221 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt
5281 aaacttagag ttgggccctg atttgaaccc ttacttggct catttgtcaa ggatgtacaa
5341 tgggtatgct ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg
5401 aaagatcctc ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca
5461 gatcacaatg ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc
5521 actccctgat gttaggaata cattcttcca ttatagtaac cagtctaaca gccgcatgag
5581 attagtggct atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac
5641 tgtctcttgc agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc
5701 accttctgtt gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct
5761 cacaaattcg aggttcccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt
5821 gcaggtgcag tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca
5881 gttgctccca tctggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg
5941 tgacaggtgg cacatgcaac tgcaaaacct caatggcaca acatatgacc caactgatga
6001 tgtgccagcc ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca
6061 aagaaatgtg ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac
6121 ctatagcccc caatttgtcc ccaaattagg ttctgtcaat cttagaatta gtgataatga
6181 cgatttccaa ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg
6241 ccacccgttc agacaatggg aactaccaaa ctattcaggg gagcttacct tgaatatgaa
6301 tcttgccccc ccagttgctc caaattttcc tggtgaacaa ttgttattct tcaggtcttt
6361 cgtgccatgc tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg
6421 gatccaacac ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta
6481 tgtcaacccc gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat
6541 tactgtggct cactctggag actatcctct tgttgttccg gctaatggac actttagatt
6601 tgattcttgg gtaaatcagt tttactcact cgccccaatg ggaactggga acgggcgaag
6661 gagggctcag taatggcggg ggctttcatt gcaggattgg caggcgacat gctcacgtcg
6721 tctgtgggct cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa
6781 aacaacaaac aactccagtc tgcttccttt cagcacgata aagagatgct cctagcgcag
6841 gtgagggcga ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc
6901 gcaggcggct tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag
6961 gtgcttgact ggtctggcac tcgatactgg gcgcccaatt ccacaaagac aactggttat
7021 tcgggacaat tcacctcttc acctgtgcat atgtctagcc catttgctcc acaatcaaaa
7081 cctgcaaagc ctaggtctct agctccttcc tcttcttcta gcagtgtcta tagtatgcaa
7141 actcaatcta ctcatttaac atctggctct tctagtaatg cctcttctgc ctccacaaaa
7201 ttgacaaatt taagctctgg ctcctctcaa aacagaacag cagagtgggt aaatcaacag
7261 agaagtctta gccctttcat gagtggcgca cttaacatct cacatgtcac gccaccctca
7321 agtagggctt ccagttctgg gacggtctcg accgtgccca aggaagtttt ggactcctgg
7381 acgtctgcgt ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag
7441 t
//