Typing tool
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Typing tool
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Complete norovirus genomes
| MZ462932 | GI.3 | |
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| GI.P13 |
ORF1: 1..5404
ORF2: 5388..7022
ORF3: 7022..7669
LOCUS MZ462932 7691 bp RNA linear VRL 07-FEB-2022
DEFINITION Norovirus GI isolate G7_8 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION MZ462932
VERSION MZ462932.1
DBLINK BioProject: PRJNA592261
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7691)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE High prevalence and diversity of caliciviruses in a community
setting determined by a metagenomic approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7691)
AUTHORS Rivera-Gutierrez,X. and Taboada,B.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2021) Genetica del Desarrollo y Fisiologia
Molecular, Instituto de Biotecnologia, Av. Universidad #2001, Col.
Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT ##Assembly-Data-START##
Assembly Method :: SPADES v. 3.13.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7691
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="G7_8"
/isolation_source="stool"
/host="Homo sapiens; Stool of a female infant of 7 months
old"
/db_xref="taxon:122928"
/country="Mexico: Morelos,Xoxocotla"
/collection_date="16-Feb-2017"
/note="genotype: GI.3"
gene <1..5404
/gene="ORF1"
CDS <1..5404
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="QXD98783.1"
/translation="MMASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGET
TTKIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQ
ESTARAWCDLSKEEKEEIIRNNERLFDAGGVTPSTLPSTFERADSNRVTDEQQPVTWS
SNGGVDLGINELTTVRGPFWNMCPLPPLEARNNGPAKEPLIGDMVEFYEGHIFHYAIY
IGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYA
SITNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAV
LSAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDI
SSFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQ
LGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYM
NVLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMM
CGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSK
ITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCR
RVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGK
GVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTNLARANGLGLISMA
TLGKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGNNVTIKEKQAPSSPQH
QAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPI
LEGKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTAGKEGKN
KGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELA
EVQAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTP
PKNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAK
EIFGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELL
PLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVV
CGVHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFW
KSNPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAV
ETVTNAIEQVMDTPVAWSYGDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAA
HANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFC
EAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNI
MCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLC
ALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDG
PIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQ
RKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLW
TGDRDLLPDYVNDDGV"
mat_peptide <1..1219
/gene="ORF1"
/product="p48"
mat_peptide 1220..2308
/gene="ORF1"
/product="NTPase"
mat_peptide 2309..2908
/gene="ORF1"
/product="p22"
mat_peptide 2909..3328
/gene="ORF1"
/product="VPg"
mat_peptide 3329..3871
/gene="ORF1"
/product="Pro"
mat_peptide 3872..5401
/gene="ORF1"
/product="RdRp"
gene 5388..7022
/gene="ORF2"
CDS 5388..7022
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QXD98784.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANADLICSLEWLSPPSE
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7022..7669
/gene="ORF3"
CDS 7022..7669
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QXD98785.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYNSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 gatgatggcg tctaacgacg ctattgccgt tgctgatgtc agcaataaca atgctaacac
61 caacaatgaa aatataggat ctcgccttat ggcaaagatc cgtgggcgta taggcccaca
121 acgtggtgaa acaaccacaa agatcaaaga tgccaacatg gcgctcgacc ttttacgccg
181 gtcacaaaca ccatctccat gtcggcaaac taatgacagc gcccccaagg ctcaaaggga
241 ccgtcccccg cggacagctt cagaggtaaa aagggcgctg gggtgggatg ctgaaccaga
301 acaccaagaa agcacggcta gggcatggtg tgacctctca aaagaggaga aggaagagat
361 aatacgtaac aatgagaggc tttttgatgc tggaggtgtt actccatcga ccctgcccag
421 cacatttgag agggctgatt caaacagagt cactgacgag caacaacctg tgacatggtc
481 ttctaatgga ggggttgacc ttggcatcaa tgaactgacc acagttcgtg gcccgttttg
541 gaatatgtgc ccccttccac cactagaagc ccgcaataat ggccctgcta aggaacccct
601 tataggtgac atggtcgagt tctatgaagg gcacatattc cattatgcca tttacattgg
661 acagggcaag actattggag tccactcacc acaggccgct ttttccatac ccagaataac
721 catccaccca ctggtggcct ggtggcgtgt gtgttacatc cccactagcc aacagcgcct
781 cacctacgaa cagcttaagg agttggagaa tgaaccatgg ccctatgcct caatcaccaa
841 caactgttat gagttttgct gtaaagtgat ggcacttgat gatacctggc tccaaagaag
901 actggttact agtggaaaat ttaaccaccc cacacaggac tggtcacagg acaccccaga
961 tttccatcag gattcgaagc ttgaaatggt aagggacgct gtcttgtcgg ccatcaacgg
1021 tcttgtatca caacccttca agaacatcct gtctaaaatt aaaccattga atgtgcttaa
1081 tcttttatca aactgtgatt ggaccttcat gggcgtcgtg gaactggtag tgctcctggc
1141 agaactgttt gatgtgttct ggaccccacc agacatttca agcttcattg catctttact
1201 acctgatttt catctacaag gcccagaaga cctagccagg gacttagtcc ccctcatatt
1261 aggtggcata ggcttagcaa ttggttttac aagagacaaa ataacaaaag tgatgaagag
1321 cgccgttgat ggactgcggt cagcaacgca gctcggacaa tatggactgg agatattctc
1381 aattatcaag aaatacttct ttggagggga ccaaacagaa aagaccctgc ggggcattga
1441 agatgcggtg atagacatgg aagtgttgtc cagtaccaat gtgacgcaac tggtcaaaga
1501 taagaagtta gccaaagctt acatgaatgt actggacaat gaggaggaaa aagcaaggaa
1561 gctctcagtc cgtagtgctg acccacatat agtgacctct gtcaacaacc tgatatcacg
1621 catctctatg gcaagatcag ctctagctaa agcccaagct gagttgacgt cccgcccacg
1681 accagtggtt ataatgatgt gtggtcctcc tggcatcgga aagactaagg ccgctgagca
1741 cctagccggt cgactagctg ctgaaattag acctggaggt aaagttggcc ttgtaccccg
1801 ggagtccata gaccattggg atggatatca tggcgaggac gtcttgctct gggatgacta
1861 tggcatgtca aagataacag aggattgtaa taagttacag gctatagctg atactgcacc
1921 actgtcactt aattgtgaca gaatagaaaa caaaggcatg caattctctt ctgatgcaat
1981 aattataacc accaatgccc ctggcccagc cccagtcgac tttgtcaact taggccccgt
2041 gtgcagacga gtggactttt tagtttactg ttctgcaccc gagattgaac aaacgcggag
2101 ggctcatcca ggtgacacca atgccatcaa ggatctgttt aaaaaggact tctcacactt
2161 gaaaatggaa ctggctccac agggcggctt tgatagtcag ggcaacacac cttttgggaa
2221 gggtgtcatg aaaaccacaa ctctcaatag gctactgata caggccacag cattagccat
2281 ggagcgacaa gatgaattcc aactccaggg ggctgtctac aactttgatg aggatagagt
2341 ggccgccttc accaacctag ctcgagctaa tggcctgggg cttataagta tggcaacatt
2401 aggcaagaag ctgagaagtg ttaagtccat ggaaggcttg cgcaatgcac tactgggata
2461 caagattgga gagtgtgata taatctggaa caccagggtg tattcagtta agagtgacgg
2521 gaacaatgtc acaattaaag aaaagcaggc accgtcttca ccccaacatc aagccatttc
2581 cacagccacc ctggcgctct ctagactgcg ggctgccaga gcccttgcgt acgcttcctg
2641 tttgcaaagt gcagtgttgt caatacttca ggttgccggc tctgccttag tggtgagcag
2701 ggctgtaaaa cgcatgtttg gcacacgcac cgaacagccc attttggagg gtaagcataa
2761 agaacacaac tgcagggtac accgtgcaga ggccgccggt catggcccca ttggtcatga
2821 tggaatcatt gaacgttatg gtctgtgtga gagtgagcag gaaggagaag atgaccaaac
2881 tgtggagttg cccactgctg gcaaagaagg caagaacaaa ggcaaaacca aaaagggccg
2941 cggacggaaa tccaacttca atgcattctc taggcgtgga cttagtgatg aggaatacga
3001 ggagtacaag aaagtaagag aagagaaggg tggcaactac agcatacaag agtaccttga
3061 ggaccgccag cgctatgaag aagaactcgc tgaggtgcaa gctggcggag atggtggaat
3121 cggcgaaact gaagctgaga tccgccaccg tgttttctac aaatcaaagt ctggcttgag
3181 aaaacagcgg caagaggaac gccgccaatt aggtctcgtg agcggtactg aaatccgcaa
3241 acgcaaaccc atagactgga ccccccctaa aaatgattgg tcagaggaca ctagaactgt
3301 taattatgat gaacacatca gctttgaagc ccccccttca atctggagta gagtagttaa
3361 atttggcagt ggctggggtt tttgggtgag ttcaacagtg ttcatcacca caacacatgt
3421 cataccacct ggtgctaaag agatctttgg tgagaacatt agcaatattg ccatccatag
3481 agttggcgaa ttcacccaat tccgtttctc caagaaaatg aggcctgacc tctctggcat
3541 ggttctggaa gagggatgcc ctgagggcac agtgtgcacc ataatgataa aaagagactc
3601 tggagaactg ttgccgctgg ctgttcgtat gggagcagtg gcctcaatga agatccaagg
3661 gaagcttatg catggacagt cagggatgtt gctcaccggt gctaacgcca agggcatgga
3721 ccttggtacc atacctgggg attgtggagc gccctatatc cacaagagag ggaatgactg
3781 ggtggtttgt ggggtgcatg cagcagccac gaaatcaggc aataccgtgg tgtgcgccat
3841 acaaggtggt gaaggtgaag ccacgttaga gggtggcgat caaaataagg gtcactatgc
3901 aggacaccca atactaagat atggtagtgg cccttcattg tcaactaaaa caaagttctg
3961 gaaatcaaac ccccaacctc tgccccctgg tacatatgaa ccagcctacc tcggtggcag
4021 agaccccagg gttgaaggtg gtccatcttt gcagcaagta ttgcgagacc agctaaaacc
4081 atttgctgaa ccccgtggca ggttgcctga agcaggattg ctagaagccg cggttgaaac
4141 tgtcaccaat gcaattgaac aggtcatgga cacacctgtg gcatggagtt acggcgacgc
4201 ctgcatgtcc ttggacaaaa caaccagttc tggctaccct catcacaaaa gaaagaatga
4261 tgactggaac gggagttcat ttgtgagaga attgggagac caggcagcgc atgctaatag
4321 catgtatgag cttggtaaat ctatgaaacc agtgtacaca gcagcactca aggatgagct
4381 tgttaagcca gacaaggtgt acaataaaat taagaaaagg ctactctggg gggcggacct
4441 cggcaccgtc atacgtgctg ccagggcttt tgggccattt tgtgaagcaa taaagcccca
4501 tgtgattaag ttacccatta aagtgggcat gaatgccata gaagatggac ccttaattta
4561 tgcagaacac tccaaatata agtatcattt tgatgctgat tacacagcat gggactcaac
4621 acaaaatagg gagattatga tggagtcctt taacatcatg tgtaaactca ccgctaatcc
4681 ctccctggcc gcagtggtgg cacaggacct gctctctcct tctgagatgg atgtcggtga
4741 ttatgtgatc agtgtcaaag atggtctacc atctggcttt ccatgcacct cacaagtgaa
4801 cagtatcaac cattggatct acactttgtg cgccttatca gaggttactg gcttggctcc
4861 tgacgtaata cagtcacagt cttacttttc attttatggt gatgatgaaa tagtttcaac
4921 agatattgaa tttgactcaa acagactaac acaggtgcta aaagagtatg gcttaaaacc
4981 cacaagacct gataaaactg atggtccgat cattgtgagg caacaggttg atggcttggt
5041 tttccttcgg cgcaccatct cgaaggatgc catcgggtac cagggtcggc ttgatcgcaa
5101 ttccattgaa agacagctct ggtggacccg agggcccaat catgatgatc catttgaaac
5161 cttggtccca cacacacaga ggaaggtcca attaatatcc ctattaggtg aggccgcact
5221 ccatggtgag aaattctata gaaagatagc cagtagggtg atccaggagg ttaaagaagg
5281 aggattggaa atttacatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
5341 tttgagtttg tggacaggag atcgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
5461 caaatacagc tgagcctata tcaatggagc cagtggctgg ggcagcgaca gctgccgcaa
5521 ccgctggcca agttaatatg attgacccct ggattatgaa taattatgtg caagccccac
5581 aaggtgaatt caccatatca ccaaacaaca caccaggtga tattttattt gatttacaat
5641 taggccctca cctcaacccc tttctatccc atttggccca aatgtacaat gggtgggtag
5701 gtaacatgaa agtgaaagtt ctattggcag gtaatgcttt cacggcagga aaaattatta
5761 ttagttgtat accccctggt tttgtctcac agaatatatc tatagctcaa gctacaatgt
5821 tcccccacgt tatagctgat gtcagggtcc tggagcccat tgaggttcca ttggaggatg
5881 tgaggaatgt gttgttccac aataatgata acacaccaac catgagactg gtatgcatgc
5941 tctacacccc cttgcgtgcc agcggaagct catctgggac agaccccttt gtgattgctg
6001 ggcgtgtgtt gacctgccct agtcctgatt ttagcttctt attcttggtg ccccctaatg
6061 tagaacaaaa gactaaacct tttagtgtcc cagatctccc actcaatgtt ctatcaaatt
6121 caagggtgcc gtcactgata aaattcatga tggtgtcaca ggaccacgga cagatggtac
6181 aatttcagaa tggcagggtc acactggatg gacagctcca gggcaccaca ccaacatcgg
6241 ccagccagct ctgcaagatg cgggggacgg tttaccatgc ctccggtggt caagggctca
6301 atttaactga gattgatggc accccctatc atgcatttga aagcccagct cccattggtt
6361 tccctgacat aggagacagc gattggcaca tcaacgcttc acccgccacc gccttcggca
6421 gtggcgaaag cgtcaaaaga ctagatatgg aacagggctc ttcatttgcc ccacatttgg
6481 gtactgtaca ctatactaat gccagctatg aagctaatgc tgatctgatc tgctcattgg
6541 agtggctatc cccgcctagc gaaggcactc caaacaaagt caatccttgg gccattccac
6601 ggtatggttc aactttgact gaagctgctc agctagcccc accaatttac ccccctggct
6661 ttggagaagc tatagttttc tttatgtctg attttcctat agcaaatggt caagatgggt
6721 taagagtgcc ctgcactata ccccaagaat tcgtaaccca ttttgtcaat gaacaagcac
6781 caacccgtgg ggaagctgct cttcttcatt atgttgaccc cgacacacac cgcaatttgg
6841 gtgagtttaa gttataccct gaaggattta tgacttgtgt accaaattcc agtggtagtg
6901 gtccccaaac gctgcctatc aatggagtct tcacttttgt ctcttgggtt tctcgtttct
6961 atcaattaaa gcctgtggga acgaccggac cggttcgtag gctaggaatc aggagatcat
7021 aatggcccag gcaatatttg gagcaatagc tgcgacggct gctggtagcg ctgtgggtgc
7081 aggcattcag gctggtactg aggccgcact ccaacatcag cggttccagc aagatttaac
7141 gttgcagagc aacactttca aacatgacaa agaaatgcta gggctacagg ttggtgcttc
7201 cactgctctt ttgcaaaaca gcctcaacac ccgctacaac atgctcacaa atgctggtct
7261 ctcgtcctca gatgcagcac gcgtagtggt tggcgcgcca gccacacgtg ttgttgactg
7321 gaacggcacc agggtgtcag caccacaatc tacagctacc acgttgaggt ctggtgggtt
7381 catgacaatc ccaactctgt acaagggcaa acaacagcaa aaagctccaa ctgaaattgg
7441 cttgtctaac ccaaattata attcatctgt gtcttctagg gttgctgatt gggtttcctc
7501 tcaaaattct tctcgctcat ccttgggccc gtatcacccc agtgctttgc agacaacatg
7561 ggtcactcca cccggttcta gttctacttc tactatttct tctgtgtcta ctgcacctag
7621 atatttcaat actgataggt tgcctctatt cgcaaatatg aggaaataat ttttgtaata
7681 tgaaatgtgg g
//