Typing tool
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Typing tool
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Complete norovirus genomes
| MZ312111 | GII.9 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6692
ORF3: 6692..7459
LOCUS MZ312111 7544 bp RNA linear VRL 02-JUN-2021
DEFINITION Norovirus GII isolate CIQ1878, complete genome.
ACCESSION MZ312111
VERSION MZ312111.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7544)
AUTHORS Liu,D., Zhang,Z., Zhang,Z., Wang,D. and Wu,Q.
TITLE Complete genoeme sequence of GII.9 human norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7544)
AUTHORS Liu,D., Zhang,Z., Zhang,Z., Wang,D. and Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (28-MAY-2021) School of Agriculture & Biology, Shanghai
Jiao Tong University, 800 Dongchuan Rd. Minhang Dist, Shanghai
200240, China
COMMENT ##Assembly-Data-START##
Assembly Method :: spades v. 3.14
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7544
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="CIQ1878"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Shanghai"
/collection_date="19-Mar-2018"
/note="genotype: GII.9[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVY59626.1"
/translation="MKMASNDATTAFGSQNSVNDSNNTAPSNKEEVGAFSNIKVGLKK
MLGAAPKGTKAPNSEQHCPIVKIGTRTLAVPPEPPNGEDTVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGKPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKVALRDVKFNECEIIYKSFKYRVSSNGKGSVSVDKVENQASQTANEVGSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVRPTETQETSDSEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVETKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSVLAAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6692
/gene="ORF2"
CDS 5079..6692
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVY59627.1"
/translation="MKMASNDAAPSSDGAAGLVPEINHEVMAIEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPDLNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPSQLTMCPHVVVDVRQLEPVMLPMPD
IRNTFFHYNQDGGPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPAPDFEFTFLVPP
SVESKTKAFTIPVLKISEMINSRFPVPVDQMYTSRSEGIVVQPQNGRATIDGELLGTT
LVSPVSVCNFKGNLQTQVPNEHQLYQLQLTNLDGSPIDPTDDTPGPLGCPDFTGLLYG
VASQRGPGDATRAHEARIDTGNSTYAPKIGQVRFYSTSNNFEINQPTHFTPVGIYIEG
NSSDFNQWQLPRYGGHLANNNHLAPAVSPLFPGEQILFFRSFIPGASGHTNGEMDCLL
PQEFVQHFYQEAATAQSEVALLRFVNPDTGRVLFESKLHKQGFMTIASSGDHPIIMPT
NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ"
gene 6692..7459
/gene="ORF3"
CDS 6692..7459
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVY59628.1"
/translation="MAGAFIAGLAGDVLSSGVGSLVNAGSNAINQNVEYNFNRQLQEA
SFKHDKEMLNAQIAATTQLQKDIIAIKQGVLSAGGFSPTDAARGSVGAPMTKILDWNG
SRYWAPNSMRTTGYSGNFTSQGVRQVFQPAQGTPNPSTLRNAPKAPSSVNSFSTQSTQ
STKLSGSTTGTSIPSSRTTTLSRTSEWVRGQNERLSPFMSGALQTTFVTPPSSKSSSV
GTVSTVPKEVLDSWTPVFNTRRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cactgccttt ggcagccaaa actctgtcaa
61 tgacagtaac aacaccgccc cttctaataa agaagaggtt ggtgcattct ccaacattaa
121 agttggactt aagaaaatgc tgggtgctgc ccctaagggg accaaagcac ccaatagtga
181 gcagcactgc cccatagtta agatcgggac cagaacacta gcggttcccc ccgagccccc
241 aaatggtgaa gacaccgtgc agttcgacgc gaagtcggaa actgtgcgtg ggttaccaga
301 cttaacaacg gtgcaaaatg aacacgagaa cacaccatac actgtccccc cattgagtga
361 aagggaacat agaccagcca ctgagccgct tcctggaaca atactagaga tgtgggatgg
421 tgaattttac cactattctg tgtacgtcag cggcggcaaa gccctagggg ttcacaagcc
481 cccagcagca ataagcctcg cgacgataga gctcacccct atatcccttt actggagacc
541 cgtttacacc cccaactacc tggtctgtcc agacacgctg aagggccttg ctggtgagaa
601 gttcccctat acagccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagta gaagaagcat ctccaggacc accggcttct tcaaaccata
721 tcagtcttgg aacaggaaac cccttccaac tgttgatgat ggaaagatca aaaaggtggc
781 taatgcaatc ctctgtgccc ttggatcact gttttcaaaa ccaatcaaag acctgctggg
841 caagcttaaa ccactgaact tgctgcacct gctcgcatca tgcgactgga cgtttgcagg
901 tatagtggag acagttatcc taatggcaga gcttttcaac atcttttgga caccgccaga
961 tgtctcaaac ttcatagcct ccctgatagg tgattttgaa ttgcaaggtc ccgaggactt
1021 ggctgtggag cttgttcccg tggtcatggg tggcatagga atggtcctcg gcttcactgc
1081 cgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcat gtaaggacct
1141 gggaaactat gcacttgaca tactcaagct ggtcatgaag tggttcttcc caaagaaaga
1201 ggagaaagcc gagatggaaa ccctgagggc aattgaggat gccgtcctgg acatggaagc
1261 catagggaac aaccacctca caaccctcct caaggacaag gatagcctca cagcttttat
1321 gaagactcta gacttggagg aggagaaggc gaggaaactg tctaccaaat cgtcctcgcc
1381 agacatcgtc ggcactatca atgccatact ggccaggata gctgctgcca ggtccctcct
1441 acacaaggcc aaagaagaaa tgttcagcag gatcagacca gtggtcgtta tgatctcagg
1501 caagcctggt attggtaaaa ctcatatggc aagacacttg gctaagagca tcgccaacac
1561 catgagtggt gatcagagag ttggactcgt tccgcgcaat ggggtcgacc actgggacgc
1621 ctacagggga gagagggtgg tcttgtggga tgactatggc atgggaaacc ctgtcaaaga
1681 tgctctaaca ctgcaagagt tggccgacac atgcccagtt accctaaact gtgacaggat
1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacgacca atctagtcaa
1801 cccggcgccc cttgattatg tgaacttcga ggcgtgttcc agaagggttg actttttagt
1861 ctatgcagag tcaccagaaa ttgagaaggt taaaagggat ttccctggcc aacctgatat
1921 gtggaaggac cattttaaac cggatttctc ccatataaag cttactctag ccccccaagg
1981 cggatttgac aagaatggca acaccccgca tggcaagggc accatgcgct ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggtct tgttcatgag aggagagatg agttccagct
2101 ccaagggaac gaccttcaaa catacaactt tgacaccaac agagtctccg catttaggaa
2161 actggccgca gacaacaagt atgggatcat ggaaacaatg agagtgggtg cggcacttaa
2221 gaatgtcaag actttggaag atctgaaagt cgccctgagg gatgtgaagt tcaatgaatg
2281 tgaaataatt tacaagagct tcaaatatcg cgtctcttcc aacggtaaag gctctgtctc
2341 tgttgacaag gttgagaacc aagcatctca aactgcaaat gaggtaggct cagcacttct
2401 tagactcagg caggcaaggg ccagatacta tataagctgc tttcaagacc ttgtttacac
2461 tctaatacag gttgccggag cgtcattcgt tgttaacaga atctccaaga ggttctgttg
2521 ggagagatgg gtcaggccaa ccgagaccca ggaaacgagt gactccgaaa aagaagtagc
2581 ccagggtaga tgggagatcg aacccaagga cacagagcca gagggcaaga agggcaagaa
2641 caagaaggga agaggtaaga aacacacagc attctccagc aagggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaatggg aaatactcca ttgaggaata
2761 cctacaggac cgagaccgct attatgagga ggtggcagtt gcccgggcaa cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag gcaaagaatc ttccgcccta ctaagaaaca
2881 gagaaaggaa gagagggggg tgcttggact ggtcactggt tcagacatta ggaagaggag
2941 accagacgat ttccaaccaa agggtaacct gtgggctgat gacaccagga gtgtggatta
3001 caacgagaga cttgattttg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggatgg ggcttctggg tctcgtctaa ccttctgatc acgacgacac atgtcctgcc
3121 taaagggatt aaggaacttt ttggggttga aaccaaacag atccaaattc ataagtctgg
3181 agagttctgc aggttcagat tcccaagacc aatcaggcca gatgtcacgg ggctcgtgtt
3241 ggaggaaggt gccccggaag gcactgtttg ctccatactc gttaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaaaatac agggtagaac
3361 cgtcggtggt cagatgggaa tgctccttac aggggccaac gcaaagaaca tggatcttgg
3421 caccggtcct ggtgactgtg gttgtcccta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggtaacact gttatatgtg ccactcaggg
3541 gcaagatggg gaggcagtcc ttgagggaaa tgaaaacctt ggcacttact gcggtgcccc
3601 aattttgggt cctggcaagg cgcccaaact cagcacgaag accaaattct ggcgctcatc
3661 accagacgct ttgccgccag gcacttatga gcctgcctac ctgggaggta aggacccaag
3721 agtagagaaa gggccatccc tgcagcaagt catgagagat caactaaaac ctttcacaga
3781 acccaggggc aagccgccca ggcctgcagt cttagaagaa gccaaaaaga cagtgatgaa
3841 tgttctagaa cagaccatcg accctgccaa gccatggact tattcccaag catgtgcctc
3901 actagacaag accacctcca gtggtagccc ccatcatgtc aggaaaaatg accattggaa
3961 cggagagtcc tttactggcc cccttgcaga tcaggcatcc aaagccaacc tcatgtatga
4021 acaggccaaa cacgtgcagc ccgtgtacac ggccgcgctc aaggatgagc ttgtcaagac
4081 cgacaagatc tataaaaaga taaagaaaag gctcttatgg gggtcagacc ttggcacgat
4141 gatcaggtgc gccagggcct ttggcggcct catggatagc atgaaggcaa gttgtatagc
4201 ccttccatgc agggtgggga tgaacatgaa tgaggatggc cctatcatat ttgacaaaca
4261 ctctaagtac aggtaccact atgatgcaga ctattccagg tgggattcaa cccaacaaag
4321 gagcgttctc gcagccgcta tggaagtaat ggtgcgattt tccgccgaac cagaactggc
4381 acaagtggtc gcagaggatc ttctggctcc cagtcaactg gatgttggcg attttgtcat
4441 ctcagtccaa gagggtctgc catcaggagt cccatgcaca tcacaatgga actcaatagc
4501 acactggatc ctaactttga gtgctatggc agaagtgtcg ggtctatcac cagacgtcgt
4561 ccaagcccac tcttgtttct cattttatgg cgacgatgag atcgtcagca ctgatatcaa
4621 ccttgacccc atgaaactga cacagaaact cagggagtat ggtctggtcc ccacccgacc
4681 tgacaaaact gaaggtcccc tcgtaataac tgaagacctc accggcctga cattcctgcg
4741 taggtcgatt gcacgggacc cagctgggtg gtttggaaag ttggaccaag actcaatcct
4801 taggcagcta tactggacaa ggggccccaa ccatgagaac ccatacgaga gcatggtccc
4861 tcattctcag cgggccacac agctcatggc ccttcttggt gaggcttcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt catcaatgaa attaagagtg gtggtctgga
4981 attttatgtg cccagacaag aggccatgtt tagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc gagtgatggc gcagccggcc tcgtcccaga gatcaatcat gaggttatgg
5161 caatagagcc cgtcgcaggc gcatcaatcg ctgctcctgt ggtgggacaa caaaatatta
5221 ttgatccctg gataagaaat aattttgtac aggcacctgc tggagaattt accgtttccc
5281 ctaggaatgc cccaggtgag ttcttgcttg atttagaact gggccctgat ttgaatccct
5341 atctggcaca tttggcaaga atgtacaacg ggcatgcggg tggtatggaa gtgcaaatag
5401 tactagctgg gaatgcgttc acagctggta aaatcctgtt tgccgtcata ccgcctggat
5461 tcccgtatga aaatttgtcc ccatcacaac tcacgatgtg cccccacgtc gtggttgatg
5521 taaggcaact tgagcctgtc atgttgccca tgccagacat taggaataca ttctttcatt
5581 ataatcaaga tggtgggcca aaattgaggc tgattgctat gctgtacacc cctctaagag
5641 ctaataattc aggtgatgat gtgttcactg tttcctgtag ggttctaaca agacctgccc
5701 ctgattttga attcacattt ttagtccctc cctctgttga gtcaaagact aaggcattta
5761 ccatcccagt gcttaaaatt tctgaaatga taaactcaag attccctgta ccagttgacc
5821 aaatgtacac cagcaggagt gaaggaatcg tggttcagcc tcaaaacggt agggccacaa
5881 ttgacggaga gttacttggc accactctcg tctctccagt ctctgtgtgt aatttcaagg
5941 gaaacttgca gactcaggtc ccaaatgaac accagcttta ccaactgcag ctgactaacc
6001 tcgatggttc acccattgac cccactgatg acacacctgg gccactgggt tgtccagact
6061 tcactggtct cctctatggg gttgccagcc agcgtggtcc aggtgatgct acgcgggccc
6121 atgaggcacg gattgacacc ggcaacagca cttatgctcc taaaattggt caggtcaggt
6181 tctactcaac ttcaaataat tttgagataa atcaacccac acacttcacc ccagtaggga
6241 tctatattga gggtaattct tctgatttta atcaatggca gctccccagg tatgggggtc
6301 atctagctaa caacaaccat ttggcacccg ctgtttctcc cctctttcct ggagagcaaa
6361 ttcttttctt tagatcattc atcccaggag ccagtggcca cacaaatgga gagatggatt
6421 gtctcctgcc acaggagttt gtgcagcact tctaccagga agcggcaact gcacagtcag
6481 aagtggcctt gctgaggttt gtcaaccctg acactggaag ggttttgttt gagtctaaac
6541 tccataagca aggattcatg acaattgcaa gttcaggtga ccaccctatt atcatgccaa
6601 ctaatggtta ttttagattt gaagcttggg ttaatcaatt ttattctctt gcccctgtgg
6661 gaactggaag tgggcgtaga agaatccaat aatggctgga gcttttatag caggattggc
6721 tggggacgtt ctgtcctctg gcgttggttc gctggtgaac gcgggttcca atgctatcaa
6781 ccaaaatgtt gaatataatt tcaacaggca gctccaggaa gcatctttca aacatgataa
6841 ggaaatgctc aatgcccaaa ttgctgcgac aacgcagctg caaaaagaca taatagcaat
6901 aaagcagggg gttttgtccg ctggcggctt ctccccaact gatgccgcga gaggttcagt
6961 gggggcccca atgaccaaga ttttggattg gaatggatca agatattggg ctccaaattc
7021 aatgaggacc acaggttact ctggcaactt cacttcccag ggtgttaggc aagtgtttca
7081 acctgctcaa ggcactccca acccaagcac cttgagaaat gctcccaagg ctccctcttc
7141 agtgaattct tttagtaccc aatctaccca atcaacaaaa ttgagtggct ccacaacagg
7201 aacctctatt ccctcatcca gaaccactac actttcaaga accagtgagt gggtgagagg
7261 gcagaatgag agacttagcc ctttcatgag tggcgcgcta caaacaacct tcgtgacgcc
7321 accatcaagc aagtcttctt ctgtagggac agtctcgacc gtccctaagg aggttttgga
7381 ctcctggacg cctgtcttta acacacgcag gcagccactc ttcgcccacg ttcgtaggcg
7441 aggggagtca cagatttagt gaaaagaatg atttgaattt gattctttgt tttattcttg
7501 tctttcttct aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//