Typing tool
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Typing tool
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Complete norovirus genomes
| MZ292759 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS MZ292759 7490 bp RNA linear VRL 31-MAY-2021
DEFINITION Norovirus GII isolate Hu/US/2011/GII.7[P7]/CA-RGDS-1132
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MZ292759
VERSION MZ292759.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7490)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7490
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="CA-RGDS-1132"
/isolate="Hu/US/2011/GII.7[P7]/CA-RGDS-1132"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="09-Feb-2011"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GII.7[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVW09204.1"
/translation="MKMASNDASAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAI
LRLRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETQEVNDSEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITENLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6701
/gene="ORF2"
CDS 5079..6701
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVW09205.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 6701..7474
/gene="ORF3"
CDS 6701..7474
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVW09206.1"
/translation="MASAFLANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNRQFLKVDPSPPSSSGSSVSSVKTQ
STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS
NVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtaat aatgccaccc cttctaataa agaagaggtt ggtgcattct ccaacatcaa
121 ggttggattc aagaaaatgc tgggtgccgt acccaagggt accaaagcac ccagcagtgg
181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc
241 aaatggtgaa gacaccgtac agtttgatgc aaagtcagaa actataattg ggttgccaga
301 cttaacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cattaagtga
361 gagggagcat agaccggcca ctgaaccact tcctggcaca atactggaga tgtgggatgg
421 tgagttttac cattactccg tgtacgtcag cgacggcaaa gctctggggg tccacaaacc
481 accggcggct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc
541 cgtttatacc cccaattact tggtctcccc ggacacatta aagggcctcg ctggtgagaa
601 gttcccctac acggccttca gtaacaactg ttacaacttc tgttgctggg tgctagagct
661 caacgacacg tggcttaaca gaagatgcat ttccagaact accggctttt tcaaaccata
721 ccagtcttgg aacaggaaac ccctcccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg
841 caaactcaag ccattgaacc tactgcactt gcttgcgtct tgtgattgga cgtttgcggg
901 tatagtggag acagtcatct tgatggcaga gcttttcaat gtcttctgga ccccgccaga
961 tgtctctaat tttatagcct ccctaatagg tgattttgaa ttgcaagggc ctgaagacct
1021 ggctgtggag ctcgtccccg tggttatggg cggcataggg atggttctcg gtttcaccgc
1081 tgagaagata ggccgcatgc tgtcatccgc tgcatcaaca ctgcgggcgt gcaaagacct
1141 agggaactac gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaaaga
1201 agagaaagct gagatggaaa ccttgagggc aatcgaagat gccgtcctgg atatggaagc
1261 tatagggaat aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat
1321 gaagaccctg gatctggagg aggagaaggc gaggaaactg tccactaaat catcttcacc
1381 ggacatagtt ggcacgatca atgccatact ggctaggata gctgctgcta gatcccttct
1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtga tgatctcagg
1501 cagaccaggc attggaaaga cccacatggc gagacatttg gctaagagca tcgccaacac
1561 catgagtggc gatcagagag tcgggctcgt tccgcgcaac ggtgtcgacc actgggatgc
1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
1681 cgccctaaca ctacaagagc tggccgacac atgtccagtc actttaaatt gtgataggat
1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagggttg acttcctggt
1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagggac ttccctggcc agcctgacat
1921 gtggaaagac cactttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggcaagggc accatgcggt ccctaaccca
2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg aattccagct
2101 ccaaggaaat gacctccaaa catacaactt tgacaccaac agagtctccg cattcagaaa
2161 attggctgca gataacaagt atgggatcat ggagacgatg agagtgggtg cggcactcaa
2221 gaatgtgaag accctggaag atcttaaaat tgcattgagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaagaact ctaagtaccg agtctcttcc aatggtaaag gttcagtttc
2341 tgttgataaa gttgaggaca atgcatccca gactgtaaac gaggtacaat cagcaattct
2401 caggctcagg caagcgaggg ccaggtatta tatcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccggag catcattcgt tgtcagcagg atctccagaa ggttttgctg
2521 ggaaaggtgg gtcaaaccga ccgagaccca ggaggtgaat gattccgaaa aggaagtggc
2581 acaaggcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaagaa
2641 caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggagga aaggaacgga aagtattcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca
2881 gaggaaggag gaaaggggtg ttcttggctt agtcaccggc tcagacatca gaaagaggag
2941 accagatgac ttccaaccaa aaggcaacct atgggcagat gacaccagga gtgtggacta
3001 caatgagagg cttgactttg aagcgccccc gagtgtctgg tcaagaatag tcccattagg
3061 caccggttgg ggattctggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggagctct ttggagttga aatcaagcaa atccaagttc acaagtctgg
3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact
3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga
3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac
3361 tgttggtggc cagatgggga tgcttctcac aggagcaaac gcgaagaaca tggacctcgg
3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgtggcaacg acattgttgt
3481 cgcgggtgtt cacaccgcag cagcccgggg aggcaacact gttatatgtg ccacccaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc
3601 gattctgggt cctggcaagg cgcctaaact cagcacaaag accaagtttt ggcgctcatc
3661 accagatgcc ttgccacctg gcacatatga acctgcttac ttaggaggca aagaccctag
3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga
3781 acccaggggc aaaccaccta ggcctgcagt cttggaggaa gccaaaaaga cagtgatgaa
3841 tgttctagaa caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc
3901 actggacaaa accacctcta gtggtagtcc ccatcacgtt aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cacttgcaga tcaggcctct aaagccaacc tcatgtatga
4021 gcaggccaaa catgtgcagc ccgtgtatac ggccgcgctc aaagatgagc ttgttaagac
4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc
4201 tcttccttgc agggtaggaa tgaacatgaa tgaagatggc cccattatat ttgataaaca
4261 ttctaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccaacaaag
4321 gagcattctt tctgccgcta tggaagtaat ggtgcggttc tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat
4441 ttcagtccag gagggtctgc catcaggagt cccatgtaca tcacaatgga actcaatagc
4501 acactggatc ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagca ctgatatcaa
4621 ccttgacccc atgaagttga cacagaagct cagggagtat ggtctggtcc ccacccggcc
4681 tgataaaact gaaggtcccc tagtcataac tgaaaacctc actggcctga cgttcctccg
4741 taggtcgatt gcccgggacc cagctggttg gtttggaaag ctggaccaag actcgatcct
4801 taggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggttcc
4861 tcattctcag cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt catcagtgag atcaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt taggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaat aattttgtgc aagctcctgc aggtgagttt acagtttccc
5281 ctagaaattc ccctggtgaa attttacttg atttggagtt gggaccagaa ttgaacccct
5341 atctcgctca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg
5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cccccagggt
5461 tcccatatga aaatttgtca ccttcacaaa tcacaatgtg tcctcatgtt ataattgatg
5521 ttagacaatt agaaccagtt ctattaccta tgccagatat tagaaataat ttcttccatt
5581 acaatcaggg caatgaccca aaattgagat tgatagctat gctctacacc cctttaaggg
5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggtcctcact aaaccgtcac
5701 ctgattttga attcacattt ttggtccccc ctacggttga atctaagacc aaacagttca
5761 cattacccat cctcaaaata tcggagatga ccaactcaag attcccagtg ccagtggaaa
5821 tgatgtacac agccaggaat gaaaaccaag ttgtccagcc acagaatggt agggtcacac
5881 tcgatggcga actattgggc accacaccct tgttggctgt caacatctgc aaatttaagg
5941 gggaggttat agctaagaat ggagatgtga gatcctatag gatggacatg gaaatcacca
6001 acactgatgg caccccaatt gaccccacag aagacacacc tggtcccatt ggttcacctg
6061 actttcaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg
6121 ccacgagagc ccatgaagcc aacattaaca ctggtgggga ccaatatgcc cccaaattgg
6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca
6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat
6301 acggtggaca tctcaccaac aacacccact tggccccagc agtggccccc ctattcccag
6361 gtgagcagat tctattcttt agatcacaaa tacccagctc aggcggccat gaattaggtt
6421 acatggactg ccttgtccca caagaatggg tccagcactt ctatcaagaa gctgccacag
6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg
6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca cactggtgat aacccaattg
6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg
6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttccttgc
6721 aaatttggca ggaggcgttg cctccaatgg aattagttca ctcataaatg ctggggctaa
6781 tgctattaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc
6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctac aacaagagat
6901 gattgacata aagcaagggg tgctgacagc tgcgggattc tctcctacag atgccgcgag
6961 gggttctgtc ggcgcgccaa tgacaaaatt agttgattgg agtggcacta gatattgggc
7021 gcctggtgcc atgaggacaa caggctattc agggactttt actcacttgc cccctgtgca
7081 gtctgcttca tatgttaata atcaaaatag acaatttctt aaagtagatc cttctcctcc
7141 ttcttcgagt ggttcttctg tttcttctgt taaaacacaa tcaactaccc tctcaggcac
7201 ttcaagggtg ggctcttcat ctcagtcaac cctgtcgacc aggccgagca caaggacatc
7261 tgattgggtg cgtagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac
7321 aacgtatgta acgccaccat ccagtagggc atcaaatgtc agcacagtct cgaccgtgcc
7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc
7441 ccatttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag
//