Typing tool
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Typing tool
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Complete norovirus genomes
| MZ272475 | GII.14 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6689
ORF3: 6689..7483
LOCUS MZ272475 7505 bp RNA linear VRL 29-MAY-2021
DEFINITION Norovirus GII isolate Hu/US/2011/GII.14[P7]/CA-RGDS-1123
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MZ272475
VERSION MZ272475.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7505)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="CA-RGDS-1123"
/isolate="Hu/US/2011/GII.14[P7]/CA-RGDS-1123"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="06-Feb-2011"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GII.14[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVU18570.1"
/translation="MKMASNDASAAFGSQNSVNDSINATPSNKEEVGAFSNIKVGLKK
MLGAVPKSTKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDIVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFSAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKSDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKLALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKIEDNASQTANEVQSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQDVNESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6689
/gene="ORF2"
CDS 5079..6689
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVU18571.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSSDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 6689..7483
/gene="ORF3"
CDS 6689..7483
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVU18572.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG
SRYWAPNSMKTTGYSGTFSSQGIKSSPYLSNQIPSVVKSTKPLPSISSSSSVYSSPST
APSQSTQSTTLSPGTGSSRSNSVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccttt ggcagtcaaa actctgtcaa
61 tgacagtatc aacgccaccc cttccaataa ggaagaggtt ggtgcattct ccaacatcaa
121 agttggactt aagaaaatgc tgggcgctgt acccaagagc actaaagcac ccagcagtgg
181 tcaacattgt cccacagtta agatcgggcc caaaacatta acaattcccc ctgagccccc
241 aaatggtgaa gacattgtgc agtttgatgc aaagtcggaa actataattg ggctaccgga
301 cttgacaacg gtgcaaaacg aacatgaaaa caccccatat accgtccccc cattaagtga
361 gagggagcac agatcggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
421 tgaattttac cactactccg tgtatgtcag cgatggcaaa gctctggggg tccacaaacc
481 accggctgct ataagcctcg cgacgataga gctcaccccc atatctctct actggagacc
541 cgtttacacc cccaactatt tggtctcccc agacacattg aaaggcctcg ctggtgagaa
601 attcccctac acggccttta gtaacaattg ttataacttt tgttgttggg tgcttgagct
661 caacgacacg tggctcaaca gaagatgcat ttccagaacc accggcttct tcaaacctta
721 tcagtcttgg aacaggaagc ccctcccgac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcgatc ctctgtgcac tcggctcact gttctcaaaa ccaatcaaag atttgttagg
841 caaacttaag ccattgaacc tgctacactt gcttgcgtca tgcgattgga cgtttgcggg
901 tatagtggag acagtcatct taatggcaga acttttcaat gtcttctgga ccccgccaga
961 tgtctctaat tttatagcct ccctgatagg tgattttgaa ttacaagggc ctgaggacct
1021 ggctgtggag cttgttcctg tggttatggg tggcatagga atggtcctcg gtttctccgc
1081 tgagaagata ggccgtatgc tgtcgtccgc cgcatcaaca ctgcgggcat gcaaagacct
1141 aggaaactat gcccttgaca ttctcaaatt ggtcatgaag tggttcttcc caaagaagga
1201 agagaaagct gagatggaaa ccttgagggc gatcgaggat gccgtactag atatggaagc
1261 tatagggaat aaccacctca cgaccctcct caaggacaaa gacagcctca cggcctttat
1321 gaagaccctg gacctggaag aggaaaaagc aaggaaactg tccacaaagt catcttcacc
1381 ggacatcgtc ggcaccatta atgccatact agctaggatt gctgccgcca gatcccttct
1441 acataaggcc aaagaagaga tgtttagtag gatcagacca gtggtcgtta tgatatcagg
1501 cagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagtggc gatcagagag tcggactcgt cccgcgcaac ggtgtcgacc actgggatgc
1621 ctacagaggg gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
1681 tgccttaaca ttacaggagt tggccgacac ctgtccagtc actttaaatt gtgataggat
1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacaacca acctggtcaa
1801 ccccgcgccc ctcgactatg tgaacttcga agcgtgttcc aggagagttg acttcttggt
1861 ctatgcagag tcaccagaga ttgaaaaggt taagagggac ttccctggcc aacctgacat
1921 gtggaaagac catttcaagt cagacttttc tcatatcaag ctaactttag ccccccaggg
1981 tgggtttgat aagaatggta acactccaca cggtaagggc actatgcggt ccctgaccca
2041 gggttccctg actgcaagag ttgcgggcct tgtccatgag aggagagatg agttccaact
2101 ccaaggaaac gacctccaaa catacaattt tgacaccaac agagtctccg catttagaaa
2161 actggctgca gacaacaagt acggtatcat ggaaacgatg agagtgggtg cggcgctcaa
2221 aaatgtaaag accttggaag atctaaaact tgcattaagg gatgtaaaat tcaatgagtg
2281 tgaaataatt tacaggaact ctaagtatcg agtctcttcc aacggtaaag gctcagtttc
2341 tgttgacaaa attgaggaca acgcatccca gaccgcaaac gaggtacaat cagcacttct
2401 caggctcaga caagcgaggg ccagatatta catcagctgc ttccaagacc tcgtttacac
2461 tctcatacag gttgccggag catcattcgt tgtcaacaga atttccaaaa ggttctgctg
2521 ggaaaggtgg gtcaaaccaa ccgagaccca ggatgtgaat gagtccgaga aggaagtggc
2581 tcaaggtaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggcaagaa
2641 caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaatgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcaa cagaggagga
2821 cttctgtgaa gaggaagagg ccaaaataag acaaagaatt ttccgcccga caaagaaaca
2881 aaggaaggag gaaaggggtg tacttggctt agtcaccggc acagacatca gaaagaggag
2941 accagacgat tttcaaccaa aaggcaatct gtgggcagat gacaccagga gtgtggacta
3001 caatgagaga cttgattttg aagcaccccc aagtgtctgg tcgagaatag tcccattagg
3061 cactggttgg ggtttctggg tttcatccaa ccttctaatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggaactct ttggagttga aatcaaacag atccaagttc acaagtctgg
3181 agagttttgc aggtttagat tcccaagacc aatcaggcca gatgtcacag gcctcgtgtt
3241 ggaggaaggc gccccagagg gcactgtctg ttctatactc ataaaaagac ctacaggtga
3301 gatgattccc ttggcagtga ggatgggcac acacgcatcc atgaaaatac aaggcaggac
3361 cgttggtggc cagatgggaa tgcttctaac aggagcaaat gcgaagaaca tggatctcgg
3421 caccggccct ggtgactgcg gttgtcccta catctacaaa cgcggcaacg acatagttgt
3481 tgcgggtgtc cataccgcag cagcccgggg aggtaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctc ggtacctact gtggcgcccc
3601 aattctgggc cctggtaagg cgcctaaact cagcacgaag accaagtttt ggcgctcatc
3661 accagacgcc ttgccacctg gcacgtatga acctgcttac ctgggaggca aagaccccag
3721 agtggaaaga ggaccttccc tgcagcaagt catgagagac cagttgagac ccttcacaga
3781 acccagggga aaaccgccta gacctgcagt cttagaagaa gccaagaaga cagtgatgaa
3841 tgttttagaa caaaccattg accctgcaaa accgtggtcc tactcgcaag catgtgcctc
3901 actggacaaa actacttcta gtggtagccc ccatcatgta aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cccttgcaga tcaggcatct aaagccaacc tcatgtatga
4021 acaggctaaa catgtgcagc ccgtgtacac ggccgcgctt aaagatgagc ttgttaagac
4081 tgacaagatc tacaaaaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gctgtatagc
4201 ccttccatgc agagtaggaa tgaacatgaa tgaagatggc cctatcatat ttgataaaca
4261 ttctaagtac aggtaccact atgatgctga ctattctagg tgggactcaa cccagcaaag
4321 gagcattctt tctgccgcta tggaagtgat ggtgcggttt tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcgcc tagccagctt gatgttggtg attttatcat
4441 ctcagtccag gagggcctgc catcaggagt cccatgtaca tcacaatgga attcaatagc
4501 acactggatc ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagca ctgacatcaa
4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggcctggtcc ccacccgacc
4681 tgataaaact gaaggtcccc tcgtcataac tgaagacctc accggcctga cgttccttcg
4741 taggtcgatt gcgcgggacc cagctggatg gtttggaaaa ttggaccaag attcaatcct
4801 caggcaacta tactggacaa ggggacctaa ccatgagaac ccgtacgaga gcatggtccc
4861 tcactcccag cgggccacac agcttatggc ccttcttggt gaggcttcac tgcatggtcc
4921 ccagttttac aagaaagtta gcaagatggt tattaatgag attaagagtg gtggtctgga
4981 attttatgtg cccagacagg aggccatgtt caggtggatg agattttctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacaat gaggttatgg
5161 ctcttgaacc cgtcgctggg gcctccattg cagcccccgt agtcggccaa cagaatataa
5221 ttgatccctg gattagaaat aattttgtac aagcccctgc tggtgaattc acagtttccc
5281 ctagaaactc tcctggagaa cttctacttg atttggaatt gggtcccgaa ctcaatccct
5341 atcttgcaca tttggccagg atgtacaatg ggcatgcagg aggaatggaa gtgcagatag
5401 tactggctgg gaatgcgttc acagctggta agattctatt tgctgccatc ccgcctagct
5461 tcccctatga aaatttgtca cccgctcaat tgactatgtg ccctcatgtg atagtggatg
5521 tgaggcaatt agaaccagtg cttctgccaa tgccagatat aagaaatgtt ttctaccact
5581 ataaccagaa caatagtccc aaacttaggc ttgtagctat gctttatact cctctgaggg
5641 ctaacaactc aggtgatgac gtgttcacgg tgtcttgccg cgttttaaca cgtccttctc
5701 cagatttcca gttcaccttt ctggtcccac ccacagttga gtctaaaact aagaatttca
5761 cccttcccgt tcttagagtc tcagagatga caaactcaag gttccccgtt gttttagacc
5821 aaatgtatac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc aggtgcacga
5881 ctgacggtga gctgcttggc actaccatct tgcagtctgt gtctatttgc aactttaaag
5941 gaacaatgca ggcaaagctg aatgaagagc cacgatacca actacaactc accaacttgg
6001 atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca ccagacttcc
6061 aggccatgtt atatggtgtt gcaagccaac gctcttccag tgacaatgcc actagggcac
6121 atgatgcaca gattgacact gcgggcgaca cattcgcccc gaaaattggc caggttcgtt
6181 ttaaatcaag ctctaatgat tttgacctac atgaccctac aaaattcaca cctattggtg
6241 tcaatgtgga tgaccagcac cctttcagac agtggtccct gccaaactat ggtggtcacc
6301 ttgccctgaa caatcattta gcccccgctg tgacaccact ctttcctggc gagcagattt
6361 tgttcttcag gtcatacatt ccaagcgccg gaggccacac agacggtgct atggactgct
6421 tgctgcccca agagtgggta gagcacttct accaggaagc ggctccttcc caatctgaca
6481 ttgcactggt aaggttcatc aaccctgata caggaagagt gctctttgaa gctaaattgc
6541 ataaacaagg tttcctcaca attgcagcat ctggagatca ccctattgtg atgcccacta
6601 atggttactt taggtttgaa gcttgggtca accctttcta cactctcgcc cccgtgggaa
6661 ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag gcttggcagg
6721 tgacgttgtg acttccagct tgggctcact tgtgggcgct ggagccaacg ccatcaacca
6781 gaaagtggag tatgacttca acagacagct ccaggaggca tcttttagac atgataagga
6841 tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga tagacatcaa
6901 gcgggaggca ttgaccgcag gcggcttttc ccccgctgat gctgcaagag gtgcagttag
6961 ggcgcctatg acacagattc ttgattggaa tggttctagg tattgggccc ctaactccat
7021 gaagacaact ggctattcag gtacattttc ttcccaaggc attaaaagtt ccccctacct
7081 gtctaatcaa attccaagtg ttgttaaatc taccaaacct ttaccatcta tatctagttc
7141 ctctagtgta tatagttctc cttctactgc cccctcacaa tcaacacaat caacaacgct
7201 gtctccagga acagggtcct caagatctaa ctccgtgtcc acaaagacct ccacattgtc
7261 gaggacaagt gactgggtta gaggtcaaaa tgagatgctt ggcccgttca tgagtggtgc
7321 actccaaact gcttatgtca caccaccatc gagcagggcc tcatcacaag ggacggtctc
7381 gaccgtaccc aaggctgttt tggactcctg gactcccatg ttcaacaccc acaggcagcc
7441 tctcttcgcc cacttgcgta ggcgagggga gtcacagatt tagtgaaaag gatgattagg
7501 gtttc
//