Typing tool
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Typing tool
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Complete norovirus genomes
| MZ265480 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7501
LOCUS MZ265480 7514 bp RNA linear VRL 26-MAY-2021
DEFINITION Norovirus GII isolate Hu/US/2012/GII.6[P7]/CA-RGDS-1119
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION MZ265480
VERSION MZ265480.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7514)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7514
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="CA-RGDS-1119"
/isolate="Hu/US/2012/GII.6[P7]/CA-RGDS-1119"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="05-Oct-2012"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GII.6[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVQ62905.1"
/translation="MKMASNDASAAFGSQNSVNDSINTAPSNKEEVGAFSNIKVGFKK
ILGAVPKGTKAPSSDQHCPTVKIGTKTLTVPPEPPNGEDAVQFDVKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVTK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGTDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKIEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWVFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNESLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6722
/gene="ORF2"
CDS 5079..6722
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVQ62906.1"
/translation="MKMASNDASASNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG
AIDFKGTVFGVASQRDVSGQQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG
QPVRFTPIGMGDNDWHQWELPDYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 6722..7501
/gene="ORF3"
CDS 6722..7501
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVQ62907.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHKSPAPSLHTASPKSRLQNDSASVYSFPSSVSSQS
THSTVLSAGTGSSRSIPTSTATPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgctttt ggcagccaaa actctgtcaa
61 tgacagtatc aacaccgccc cttccaataa agaagaggtt ggtgcattct ccaacatcaa
121 agttggtttt aagaaaatac tgggtgccgt tcccaagggg accaaagcac ccagtagtga
181 tcagcactgc cccacagtta agatcgggac caaaacatta acagttcccc ctgagccccc
241 aaatggtgaa gacgccgtgc agtttgatgt gaagtcggaa actgtgcgtg ggctaccaga
301 cttgacaacg gtgcagaatg aacacgaaaa cacaccatac actgtccccc cattgagtga
361 aagggagcac agaccagcca ctgagccgct tcctggtaca atactggaga tgtgggatgg
421 tgaattctac cattactccg tatacgtcag cggtggcaaa gccctagggg ttcacaagcc
481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc
541 cgtttacacc cccaactatc tggtctgtcc agacacgttg aaaggcctcg ctggtgagaa
601 gttcccctac acggccttca gcaacaactg ttacaacttc tgctgctggg tgctcgagct
661 caatgacacg tggcttagca ggagaagcat ctccaggacc accggcttct tcaaaccata
721 tcagtcttgg aataggaaac cccttccaac cgttgatgat ggaaagatta aaaaggtggc
781 caacgcgatt ctttgcgcac ttggatcact gttttcaaaa ccaatcaagg acctattggg
841 caaacttaaa ccattgaact tgctgcactt gctcgcatca tgtgactgga cgtttgcggg
901 tatagtagag acagttatcc taatggcgga acttttcaac atcttttgga caccgccaga
961 tgtttccagc ttcatagcct ccctgatagg cgattttgaa ctgcaagggc ctgaggacct
1021 ggctgtggag cttgtccccg tggtcatggg tggcatagga atggttctcg gcttcactgc
1081 tgagaagata ggccgcatgc tatcatccgc tgcatcaaca ctgcgggcat gtaaagactt
1141 ggggaattat gcccttgaca tattgaaact ggttacgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccttaagggc gatcgaggat gctgtcctgg atatggaagc
1261 tataggaaac aaccatctca caaccctcct taaggacaag gacagcctca cggctttcat
1321 gaagactctg gacctagaag aggagaaggc aaggaagctg tccaccaagt catcctcgcc
1381 agatatcgtc ggcactatta atgccatact ggccagaata gctgctgcca ggtccctctt
1441 acacaaggcc aaagaagaaa tgtttagcag gattagacct gtggttgtta tgatctctgg
1501 tagacctggc attggcaaaa cccacatggc aaggcacttg gctaagagta tcgccaacac
1561 catgagcggc gaccagagag tggggctcgt cccacgcaac ggggtcgatc actgggacgc
1621 ctacagggga gagagggtgg tcttatggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagt tggctgacac ctgcccagta actctaaact gcgacaggat
1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacgacca acttagtcaa
1801 cccagcgccc ctcgattatg tgaacttcga ggcgtgctcc agaagggtcg actttctggt
1861 ctacgcagag tcaccagaga ttgagaaggt taagagagat ttccccggcc aacctgacat
1921 gtggaaggac cattttaagc cagacttttc ccacataaaa ctgactctag ccccacaggg
1981 cggatttgac aagaatggca ataccccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggtct tgttcatgag aggagagacg agtttcagct
2101 ccagggaacc gaccttcaaa catacaactt tgacaccaac agggtctctg catttaggaa
2161 gctggccgca gacaacaagt atgggatcat ggagacaatg agagtgggca cggcgcttaa
2221 gagtgtcaag acattggaag atctgaaagt cgccctgagg gatgtgaaat tcaatgagtg
2281 tgagataatt tacaggaact ccaaataccg agtctcttcc aatggtaaag gttctgtctc
2341 tgttgacaaa attgaggacc aaacatccca gactgcaaac gaagtgggtg cagcacttct
2401 tagactcagg caggcaagag ccagatacta tgtcagctgc ttccaagatc ttgtctacac
2461 tctaatacag gtcgccggag catcattcgt tgtcaacagg atctctaaaa ggttctgctg
2521 ggagagatgg gtcaagccaa ctgagaccca ggaaacgagt gaatccgaaa aggaagtagc
2581 ccaaggcaga tgggagattg aacccaagga cacagaacca gaaggtaaga agggcaagaa
2641 caagaaagga agaggcaaga aacacacagc tttctccagc aaaggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa tcagagaaga aaggaatgga aaatactcca ttgaggaata
2761 cctgcaagac cgggatcgct actatgagga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag gcaaagaatc tttcgcccca caaagaaaca
2881 gaggaaggaa gaaagggggg tgcttggttt ggtcactggc tcagacatca ggaagaggag
2941 accagacgat tttcaaccga agggcaatct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgatttcg aggctccccc gagtgtctgg tcaagaatag tcccattggg
3061 cactggctgg gttttctggg tctcgtccaa cctcctgatc acaacaacac acgtcctgcc
3121 taagggaatt aaagaacttt ttggagttga aatcaaacag attcaaattc ataagtctgg
3181 agagttctgc aggtttagat tcccgagacc aatcagacca gatgtcacag ggctcgtgtt
3241 ggaggaaggt gctccagagg gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac gcatgcatcc atgaaaatac agggcaggac
3361 cgtcggtggc cagatgggaa tgctcctcac gggggcaaat gcgaagaaca tggatcttgg
3421 cactggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaatact gtcatatgtg ccactcaagg
3541 gcaagatggg gaggcagtcc ttgagggaaa tgaaagcctt ggcacttact gtggtgcccc
3601 aattttgggt ccaggcaagg cgcccaaact tagcacgaag accaaattct ggcgttcatc
3661 accagacgct ttgccgccag gcacttatga gcctgcctac ttgggaggca aggaccccag
3721 agtggaaaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccagaggc aaaccaccta gacctgcagt cttagaagaa gccaaaaaga cggttatgaa
3841 tgttctggaa caaaccattg accctgctaa gccatggacc tattcccaag catgcgcctc
3901 tctggacaag accacttcca gtggtagccc ccatcatgtc aggaaaaatg atcactggaa
3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaacc tcatgtacga
4021 acaggccaaa catgtgcaac ccgtgtacac ggccgcactc aaagatgagc tagtcaaaac
4081 tgataagatc tacaaaaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gttgcatagc
4201 cctcccatgt agggtaggaa tgaacatgaa tgaagatggt cccatcatat ttgacaaaca
4261 ctctaagtat aggtaccact atgatgctga ctattccagg tgggactcaa cccagcaaag
4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgccgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc tagccagcta gatgttggcg actttgtcat
4441 ctcagtccag gagggtctgc catcaggggt tccatgcaca tcacagtgga attcaatagc
4501 acattggatc ctgaccttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt
4561 ccaagcccac tcctgtttct cattctacgg tgatgatgag attgtcagca ctgacatcaa
4621 ccttgatccc atgaagctga cacagaaact cagagagtat ggtctggtcc ccactcgacc
4681 tgataaaact gagggtcccc tcgtgataac tgaagacctc accggcctaa cgttcttgcg
4741 caggtcaatt gcacgggacc cagctgggtg gtttggaaag ttggaccaag actcaatcct
4801 cagacagttg tactggacaa ggggccccaa tcatgagaac ccatatgaga gcatggtccc
4861 tcattcccag cgggccacac agctcatggc ccttctcggc gaggcttccc tgcatggccc
4921 ccagttttac aagaaggtta gcaagatggt catcaatgaa atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 cttccgcatc gaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggtcatgg
5161 cacttgaacc ggtggtggga gcctcaatcg cagctcctgt cgtcggccaa caaaacataa
5221 ttgacccctg gattagagaa aattttgtcc aagcaccaca gggcgagttt accgtctcac
5281 cgaggaactc gcctggtgag atgctattaa atcttgaatt aggcccagaa ctcaacccct
5341 atctaagtca cctgtcccgt atgtataatg ggtatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggga aaatcatctt tgccgccgta ccaccacatt
5461 ttcccgtaga gaacatcagt gcagctcaaa taactatgtg tccccatgta attgttgatg
5521 tgagacagct tgaaccagta cttctgcccc tccctgacat aaggaatagg ttctttcatt
5581 acaatcagga gaacaccccc cggatgagac ttgtggctat gctttatacc cccctgaggg
5641 ccaactctgg tgaagatgtg tttactgttt cctgtagggt cttgacccgt cctgcccctg
5701 attttgagtt tactttcttg gtaccaccga ctgttgaatc gaagactaaa cctttcacat
5761 tgcccatatt aactcttggt gagctatcta actccagatt cccagcccca atagatatgt
5821 tgtacactga cccaaatgag gggattgtgg tccaaccaca aaatggtagg tgcactcttg
5881 atggcactct gcaaggcacc acacaactgg tccccaccca aatttgtgct ttcaggggca
5941 cactaattgg ccaaacatca agatcttcag actcaaccga ctcagcccct cggagaaggg
6001 atcacccact ccatgtgcaa ttaaagaacc ttgatggcac gcagtacgac ccaactgatg
6061 aagtgccagc agtccttggt gccattgact tcaaggggac tgtctttggg gtggctagtc
6121 agagagatgt gtcagggcaa caagtgggag caactcgagc tcatgaagtg cacatcaaca
6181 caaccgatcc taggtacaca ccaaaactgg gatccattct catgcactca gagtcggacg
6241 actttgtgac tggacagccg gtccgcttca cacccatagg aatgggtgac aacgactggc
6301 accagtggga gctgcccgac tactctggac acctaaccct gaacatgaac cttgccccag
6361 cagtcgctcc tgcttttccg ggcgagagga ttcttttctt caggtcagta gtcccgtctg
6421 ctggtggcta tgggtctgga caaatagatt gcctcatacc acaggagtgg gttcagcatt
6481 tctaccagga agctgcacca tcccaatctg ccgtggcact catcaggtat gtcaatcctg
6541 acacaggcag aaacatcttt gaggctaaat tgcacaggga aggtttcatc accgtggcaa
6601 attctggcaa caaccccatc gttgtccccc ctaatgggta ttttaggttt gaggcttggg
6661 tgaatcaatt ttacactttg acccccatgg gaactggtca ggggcgtagg aggaatcaat
6721 aatggctagt gcttttcttg caggtcttgc tggcgacgtc ataacaaatg gcgttggatc
6781 tctaataaat gctggagcta atgcagttaa tcagaaagtt gaatatgatt ttaataaaca
6841 gcttcaaatg gcatcattca aacatgataa agagatgttg caatcgcaag tgttggcaac
6901 caagcagttg cagcaggaga tgatgaacat aaggcagggg gtgttgaccg ctggcggctt
6961 ctcccccgcg gatgctgcta gaggggccgt caatgcccca atgacaaaga ttctggactg
7021 gaatggcacc aggtattggg caccaaacag catgaaaacc acaagttatt caggacagtt
7081 ttctagcagc cctgttcaca agtctcctgc cccttctctg catactgctt caccaaagag
7141 tagattgcaa aatgattctg ctagtgtata tagtttccct tcctctgtct cttcacaatc
7201 aactcattca acagtgttgt cagcaggaac cggttcttcc aggtccatcc ccacatccac
7261 agcgacccct accttgtcta gaaccagcga ctgggttagg ggacagaatg agaggctcag
7321 cccgtttatg gatggtgctc tccaaactgc ctttgtcaca cctccatcga gcaaagcttc
7381 ttcaaatggt acggtctcaa ccgttcccaa agctgttttg gactcctgga cccctatgtt
7441 taacacacat aggcagcctc tcttcgccca tctacgtagg cgaggggagt cacaagttta
7501 gtgaaaagag tgat
//