Typing tool
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Typing tool
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Complete norovirus genomes
| MZ233435 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS MZ233435 7566 bp RNA linear VRL 24-MAY-2021
DEFINITION Norovirus GII isolate Hu/US/2012/GII.4 New Orleans[P4 New
Orleans]/1114 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2
(ORF3) genes, complete cds.
ACCESSION MZ233435
VERSION MZ233435.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7566)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7566
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="CA-RGDS-1114"
/isolate="Hu/US/2012/GII.4 New Orleans[P4 New
Orleans]/1114"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="USA"
/collection_date="04-Jan-2012"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GII.4 New Orleans[P4 New Orleans]"
gene 3..5102
/gene="ORF1"
CDS 3..5102
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVL86684.1"
/translation="MKMASNDASAAAVANSNNDIAKSSSDGVLSSMAVTFKRALGARP
KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRATGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK
IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGIMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM
SELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQINNELTGALHHLR
SARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPTLSTKTKFWRSSTVSLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTVQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVARDPAGWFGKLEQSSILRQMYWTRGP
NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 3..992
/gene="ORF1"
/product="p48"
mat_peptide 993..2090
/gene="ORF1"
/product="NTPase"
mat_peptide 2091..2627
/gene="ORF1"
/product="p22"
mat_peptide 2628..3026
/gene="ORF1"
/product="VPg"
mat_peptide 3027..3569
/gene="ORF1"
/product="Pro"
mat_peptide 3570..5099
/gene="ORF1"
/product="RdRp"
gene 5083..6705
/gene="ORF2"
CDS 5083..6705
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVL86685.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6705..7511
/gene="ORF3"
CDS 6705..7511
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVL86686.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSPSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPTTARTRSWVGDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKQGESRV"
ORIGIN
1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
61 tcgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc
121 tcggggcgcg gcctaaacag cctcccccga gggaaaaacc acaaagaccc ccacgaccac
181 ctactccaga actggtcaaa aatattcccc cccccccacc caacggagag gatgaaatag
241 tggtttctta tagtgtcaaa gatggtgttt ccggcttgcc tgacctttcc accgtcaggc
301 aaccggaaga atctaacacg gccttcagtg tccctccact caatcagagg gagaatagag
361 atgctaagga gccacttact ggaacaattc tggaaatgtg ggacggggaa atctaccatt
421 atggcctgta tgtggagcga ggtctcgtac taggtgtgca caaaccacca gctgccatca
481 gcctcgctaa ggttgagcta gcaccactct ccttgtattg gagacctgtg tacactcctc
541 agtacctcat ctctccagac actctcaaga aattatctgg agaaacgttt ccctacacag
601 cctttgataa caactgttat gccttttgtt gctgggtcct ggacctaaat gactcgtggc
661 tgtgcaggag aatgatccag agagctactg gtttcttcag gccctaccaa gactggaata
721 ggaaacccct tcccactatg gatgactcca aaataaagaa ggtagctaac atattcctgt
781 gtgctctgtc ctcgctgttc actagaccca taaaagatat aatagggaag ataaggcctc
841 ttaacatcct caacatctta gcctcatgtg attggacttt tgcaggcata gtggagtccc
901 tgatactctt ggcagaactc tttggagttt tctggacacc cccagatgtg tctgcgatga
961 ttgccccctt acttggtgac tacgagctac aaggacctga ggaccttgca gtggagctcg
1021 tccccgtggt gatgggggga attggtttgg tactaggatt caccaaagag aagattggga
1081 aaatgttgtc atctgctgcg tccaccttga gagcttgtaa agaccttggt gcatatgggc
1141 tagagatcct aaagttggtt atgaagtggt tcttcccgaa gaaggaggag gcaaatgagc
1201 tggctatagt gaggtctatc gaggatgcag tcctagatct cgaggcaatt gaaaacaacc
1261 atatgaccac cttgctcaaa gacaaagaca gtctggcaac ctatatgaga acacttgacc
1321 tcgaggagga gaaagccagg aagctctcaa ccaagtctgc ctcacccgac atcgtgggca
1381 caatcaacgc cctcctggcg agaatcgctg ccgcacgttc tctggtgcat cgagcgaagg
1441 aggagctttc cagcagacca agacctgtgg tgttgatgat atcaggcagg ccaggaatag
1501 ggaagaccca cctcgctagg gaagtggcta agagaatcgc agcctccctt acaggagacc
1561 agcgtgtggg cctcatccca cgcaatggcg tcgaccattg ggatgcgtac aagggggaga
1621 gggtcgtcct atgggatgat tatggaatga gcaaccctat tcacgacgcc ctcaggctgc
1681 aagaactcgc tgacacttgc cccctcactc taaactgtga caggattgaa aacaaaggaa
1741 aggtctttga cagcgatgtc atcattatca ccactaatct ggccaaccca gcaccactgg
1801 actatgtcaa ctttgaagca tgctcgaggc gcatcgactt cctcgtgtat gcagaagccc
1861 ctgaagtcga aaaggcgaag cgtgacttcc caggtcaacc tgacatgtgg aagaacgctt
1921 tcagttctga tttctcacac ataaaactag cactggcccc acagggtggt ttcgacaaga
1981 acgggaacac cccacacggg aagggcatca tgaagactct caccactggc tcccttattg
2041 cccgggcatc agggctactc catgagaggt tagatgaatt tgaactacag ggcccagctc
2101 tcaccacctt caatttcgat cgcaataaag tgcttgcctt tagacaactt gctgctgaaa
2161 acaaatatgg actgatggac acaatgaggg tcgggaaaca gctcaaggat gtcagaacca
2221 tgtcagaact caaacaagca ctcaagaatg tctcaatcaa gaagtgccaa atagtgtata
2281 gtggttgtac ctacatactt gagtctgatg gcaagggcaa tgtgaaagtt gacagaatcc
2341 aaagtgccgc cgtgcagatc aacaatgagc tgactggcgc cctgcaccat ttgaggagcg
2401 ccagaattag atactatgtc aagtgtgtcc aggaggccct gtattccatc attcaaattg
2461 ccggggctgc atttgtcacc acgcgcattg ccaagcgcat gaacatacaa aacctatggt
2521 ccaagccaca agtggaaaac acagaggaga ccaccagcaa ggacgggtgc ccaaaaccta
2581 aggatgatga ggagtttgtc atttcatccg acgatatcaa aactgagggc aagaagggga
2641 agaacaaggc tggccgcggc aagaagcaca cagcattttc aagcaaaggc ctcagtgatg
2701 aagagtacga tgagtacaag aggattagag aagaaaggaa tggcaagtac tccatagaag
2761 agtatctcca ggacagggac aaatactatg aggaggtggc cattgccagg gcgactgagg
2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatctttagg ccaacaagga
2881 aacaacgcaa ggaggaaaga gtctctctcg gtctggtcac aggctccgaa attaggaaaa
2941 gaaacccaga tgacttcaaa cccaagggga aactgtgggc tgacgatgac aggagtgtgg
3001 actacaatga gaaactcagc tttgaggccc caccaagcat ctggtcgaga atagtcaact
3061 ttggttcagg ctggggattc tgggtctccc ccagtctgtt cataacatca acccatgtca
3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaatacag gtacacaagt
3181 ctggcgagtt ctgtcgcttg agattcccaa aaccaatcag gactgatgtg acgggcatga
3241 tcttagaaga aggcgcacct gagggcaccg tggccacact actcatcaaa aggtccactg
3301 gggaactcat gcccctagca gctaggatgg ggacccatgc gaccatgaag atccaagggc
3361 gcactgttgg aggccagatg ggcatgcttc tgacgggatc caacgccaag agtatggacc
3421 tgggtactac accaggtgat tgtggctgcc cctatatcta caagagaggt aatgactatg
3481 tggtcattgg agtccacacg gctgccgcac gtgggggaaa cactgtcata tgtgccaccc
3541 aggggagtga gggagaggct acacttgaag gtggtgacaa caaggggaca tactgtggtg
3601 caccaatcct aggcccaggg agtgccccaa cacttagcac caagaccaaa ttctggagat
3661 cgtccacagt atcactccca cctggcacct atgagccagc ctatcttggt ggcaaggacc
3721 ctagagtcaa gggtggccct tcactgcagc aagtcatgag ggaacagttg aagccattca
3781 cagagccaag gggcaagcca ccaaaaccaa gtgtattaga agctgccaag aagaccatca
3841 tcaatgtcct tgagcaaaca attgatccac ctgagaagtg gtcgttcgca caggcttgcg
3901 cgtcccttga caagaccact tccagtggtc atccgcacca cgtgcggaaa aacgactgct
3961 ggaacgggga gtccttcaca ggtaagctag cggaccaggc ttccaaggcc aacctgatgt
4021 ttgaagaagg gaagaacatg accccagtct acacagctgc gctcaaggat gagttagtta
4081 aaactgacaa aatttatggt aagatcaaga agaggctcct ctggggctcg gacctggcga
4141 ccatgatccg gtgtgctcga gcattcggag gcctgatgga tgagctcaaa gcacactgtg
4201 tcacgcttcc cattagagtt ggcatgaata tgaatgagga cggccccatc atcttcgaga
4261 ggcattccag gtacacatat cactatgatg ctgattactc tcgatgggat tcaacacaac
4321 agagggccgt gttggcagca gctctagaaa tcatggttaa attctcccca gaaccacact
4381 tggctcaggt agtcgcggaa gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca
4441 caatatcaat caacgagggt cttccctctg gggtgccctg cacctcccaa tggaactcca
4501 tcgcccactg gcttctcact ctctgtgcgc tctctgaagt cacaaacctg tcccctgata
4561 ccgtacaggc taactccctc ttctcttttt atggtgatga tgaaattgtt agcacagaca
4621 taaaattgga cccagagaaa ttgacagcaa agctcagaga gtatgggtta aaaccaaccc
4681 gccctgacaa aactgaagga ccccttgtca tctctgaaga tctgaatggc ctaactttcc
4741 tgcggagaac tgtggcccgc gacccagctg gttggtttgg aaaactggag cagagttcaa
4801 tactcaggca aatgtactgg actaggggtc ccaaccatgg agacccatct gaaacaatga
4861 ttccacactc ccaaagaccc atacaattga tgtccctact gggggaggcc gctctccacg
4921 gcccagcctt ttacagcaaa atcagcaaat tggtcattgc agagctaaaa gaaggtggca
4981 tggattttta cgtgcccaga caagagccaa tgttcaggtg gatgagattc tcagatctga
5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat
5101 gacgccaacc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt
5161 atggctttgg agcccgtagt tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat
5221 gtaattgacc cctggattag aaacaatttt gtacaagccc ctggtggaga gtttacagta
5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttaggccc tgatctgaat
5341 ccctaccttt cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag
5401 gtaatcctcg cggggaacgc gttcaccgcc gggaaaatca tatttgcagc agtcccacca
5461 aatttcccaa ctgaaggttt gagccccagc caggtcacta tgttccccca tataatagta
5521 gatgttaggc aattggaacc tgtgttgatc cccttacccg atgttaggaa taatttctat
5581 cattataatc aatcaaatga ccccactatc aaattgatag cgatgttgta cacaccgctt
5641 agggctaata atgccgggga cgatgtcttc acagtctctt gtcgagttct cacgagacca
5701 tcccccgatt ttgatttcat atttttggtg ccacccacag ttgaatcaag aactaaacca
5761 ttctctgtcc cagtcttaac tgttgaggag atgaccaatt caaggttccc cattcctttg
5821 gaaaagttgt tcacgggccc cagcagtgcc tttgtcgttc aaccacaaaa tggcaggtgc
5881 acgactgatg gcgtgctcct aggtactacc caactgtccc ctgtcaacat ctgcaccttc
5941 agaggtgatg tcacccacat tccaggcagt cgtaactaca caatgaattt ggcctcccaa
6001 aattggaaca gttacgatcc aacagaagaa atcccagccc ctctaggaac tccagatttt
6061 gtggggaaga ttcaaggagt gctcactcaa accacaagga caaatggctc gacccgcggc
6121 cacaaagcta cagtgtacac tgggagcgcc gacttttctc caaaactggg tagagttcaa
6181 tttgccactg acacggacaa tgattttgaa actaaccaaa acacaaagtt caccccagtc
6241 ggtgttatcc aggatggtag caccaccccc cgaaatgaac cccaacaatg ggtgctccca
6301 agttactcag gcagaaatat tcataatgtg cacctggccc ccgctgtagc ccccactttc
6361 ccgggcgagc agctcctctt cttcagatct actatgcccg gatgcagcgg gtaccccaac
6421 atggatttgg actgtctgct cccccaggaa tgggtgcagt atttctacca agaagcagcc
6481 ccagcacaat ctgatgtggc tcttttaaga tttgtgaatc cagacacagg tagggttttg
6541 tttgagtgca agcttcataa atcaggctac gttacagtgg ctcacactgg ccagcatgat
6601 ttggttatcc cccccaatgg ctattttaga tttgattcct gggtcaacca gttctacaca
6661 cttgccccca tgggaaatgg gacggggcgt agacgtgcgt tataatggct ggagctttct
6721 ttgctggatt ggcatctgac gtccttggct ctggacttgg ttccctaatc aatgctgggg
6781 ctggggccat caaccaaaaa gttgaatttg aaaataacag aaaattgcaa caagcttcct
6841 tccaatttag tagtaatcta caacaggctt cctttcaaca tgacaaagag atgctccaag
6901 cacaaattga ggccaccaaa aagttgcaac aggaaatgat gagagttaaa caagcaatgc
6961 tcctagaggg tggattctct gagacagatg cagcccgtgg ggcaatcaac gcccccatga
7021 caaaaacttt ggactggagc gggacgaggt actgggctcc cgatgctagg actacaacat
7081 ataatgcagg ccgcttttcc accccccaac cctcgggggc actgccagga agagctaatc
7141 ttagggctac cgtccccgcc cggggttccc ccagcacgtc ttctaactct tctattgcta
7201 cttctgtgta ttcaaatcaa accacctcaa cgagacttgg ttctacagct ggttctggta
7261 ccagtgtctc gagcctcccg acaactgcaa ggactaggag ttgggttggg gatcaaaata
7321 ggaatttgtc accttttatg aggggggccc ataacatctc gtttgtcacc ccaccatcta
7381 gcagatcctc tagccaaggc acagtctcaa ccgtgcccaa agaagttttg gactcctgga
7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtaag caaggggagt
7501 cacgggtgta atgtgaaaag acaaaattga ttatctttct tttctttagt gtcttttaaa
7561 aaaaaa
//