Typing tool
|
Complete norovirus genomes
MZ227265 | GI.6 | ||
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GI.P11 |
ORF1: 5..5371 ORF2: 5355..6977 ORF3: 6977..7606LOCUS MZ227265 7701 bp RNA linear VRL 23-MAY-2021 DEFINITION Norovirus GI isolate Hu/US/2016/GI.6[P11]/CA-RGDS-1111, complete genome. ACCESSION MZ227265 VERSION MZ227265.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7701) AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P., Barclay,L., Vinje,J., Wadford,D.A. and Morales,C. TITLE Direct Submission JOURNAL Submitted (18-MAY-2021) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R10; SPades v. 3.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7701 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="CA-RGDS-1111" /isolate="Hu/US/2016/GI.6[P11]/CA-RGDS-1111" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122928" /country="USA" /collection_date="22-Feb-2016" /note="Amplicon sequencing: first 35 nt does represent primer sequence; genotype: GI.6[P11]" gene 5..5371 /gene="ORF1" CDS 5..5371 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QVL01099.1" /translation="MMMASNDAIATNVASNNNANNTSATSRFLSRFKGLGGGASPPNP IKIKSTEMALGLIGKTTQEAVGASDPPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVK SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNL GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCF EFCCQIMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY CSAPEVEQIRRVSPGDTSALKDCFRSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTT INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR GVTSMEGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAAS IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE HKCRVHQAKAAGKGPIGHDDMVDKYGLCETEDDEEVVHTEIPSATIEGKNKGKNKKGR GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLV FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEA SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN DDGV" mat_peptide 5..1201 /gene="ORF1" /product="p48" mat_peptide 1202..2290 /gene="ORF1" /product="NTPase" mat_peptide 2291..2887 /gene="ORF1" /product="p22" mat_peptide 2888..3301 /gene="ORF1" /product="VPg" mat_peptide 3302..3844 /gene="ORF1" /product="Pro" mat_peptide 3845..5368 /gene="ORF1" /product="RdRp" gene 5355..6977 /gene="ORF2" CDS 5355..6977 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QVL01100.1" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI" gene 6977..7606 /gene="ORF3" CDS 6977..7606 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QVL01101.1" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" ORIGIN 1 attaatgatg atggcgtcta acgacgctat tgcgactaat gttgcaagca ataacaacgc 61 taacaacact agtgctacat ctcgattttt gtcgagattt aagggtttag gtggtggcgc 121 gagcccccct aaccccataa agatcaaaag tacagaaatg gccttgggtt tgattggcaa 181 gacaacccaa gaggcagtag gggccagtga cccaccgcct aaacagcaaa gagaccgacc 241 ccccagaacc caagaggaag ttcagtacgg catggggtgg actgaaaggc ccgtggacca 301 gaatgttaag tcatgggagg aacttgacac ctccaccaag gaagagattc tggacagcca 361 caaagaatgg ttcgatgctg gcggtttggg cccatgcact atgccctcaa cttgtgaaca 421 ggctaaagat gatagcccac ctggtgagca agtcagatgg tcagcgcgtg atggagtcaa 481 ccttggagtg aaccgtctca cgacggtgag tggccccgag tggaacctct gccctctacc 541 ccccattgac ctaaggaata tggaaccagc tagtgaaccc accattggag acatgataga 601 gttttatgaa ggtcatatct accactactc catatacatt gggcaaggaa agacagttgg 661 tgtacattcc ccacaggcag cattctcagt ggctagagta accatccaac ctatagctgc 721 ttggtggagg gtttgttata taccccagcc caaacataga ctgagttatg accagcttag 781 ggaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgtt ttgagttttg 841 ctgtcaaatt atgaaccttg aggacacatg gttgcagagg cggctaataa catcaggtag 901 attccaccac ccttcccagt cttggtcaca acagacccct gaatttcagc aggacagtaa 961 actggaactg gttagggatg ctatattggc tgcggtgaat ggccttgttt cacaaccctt 1021 caagaatttc ttgggcaagc tcaagcctct taatgtatta aacatcctat ctaactgtga 1081 ctggactttt atgggggtgg tagagatggt tatactactt cttgagctct ttggcgtgtt 1141 ttggaacccg cccgatgtgt ctaattttat agcatctctc ctccctgact tccacctcca 1201 ggggccagaa gacctggccc gggatttggt gccagtcatt cttggtggca taggattagc 1261 cattggattt accagagaca aagtcaccaa ggtcatgaag agtgctgtgg atggactccg 1321 ggccgctaca cagttggggc aatacgggtt ggaaatattc tcactcctca agaagtattt 1381 ctttggtggg gatcaaactg aacgaaccct caaaggcatt gaagcagcag tcatagatat 1441 ggaggttttg tcctctacat cagtgacaca attggtgaga gacaagcagg cagctaaagc 1501 ttatatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc 1561 tgacccccat gtaatatcct caacaaatgc cctaatatca cgtatagcca tggcgcgatc 1621 cgctctggct aaggctcaag ctgagatgac cagccgaatg aggccagttg tcatcatgat 1681 gtgtggacct cctggaattg ggaagactaa agcagcggaa cacttagcaa aacgtctagc 1741 taatgagatc aggcctggcg gcaaagtggg actggtacca cgtgaggctg ttgaccactg 1801 ggatggttac catggtgagg aagtgatgct atgggatgac tatggtatga caaagataca 1861 agatgactgc aacaagctcc aggctattgc tgactctgcc ccactcactc tcaattgtga 1921 taggattgaa aataaaggga tgcagtttgt gtcagatgca atagtcatca ccaccaatgc 1981 tccagggcct gcccctgtgg attttgtcaa ccttggcccc gtgtgtagac gggttgactt 2041 cctggtctac tgttccgccc cagaggtaga gcagataagg agagtcagcc ctggagacac 2101 gtcggcactt aaagactgct tcaggtcaga tttctcccac ctgaagatgg agttagctcc 2161 tcaagggggg tttgacaacc aggggaacac accattcggc aagggtgtca tgaaaccaac 2221 aaccatcaat aggctcctca tacaagctgt ggctctcacc atggagagac aggatgagtt 2281 ccgtctccaa gggaagatgt atgattttga tgatgatagg gtgtcagcct ttaccaccat 2341 ggcacgcgat aatggattgg gcatcctgag catggcgagc ctaggcaaga agctgcgcgg 2401 tgtcacatcg atggaaggtc tgaagaatgc tttgaaaggg tataaaattg gtgcgtgcac 2461 aattaagtgg caggccaagg tctattcact agagtcagat ggcaacagtg ttaacatcag 2521 ggaggagaag aatgtcttaa ctcaacaaca gcagtcggtg tgcgctgcct ctattgcact 2581 cacccgtctg cgggccgcac gcgcggtggc gtatgcgtca tgcattcaat cagccataac 2641 ctccatacta caaattgctg cctctgccct agtggtcaac agggccgtga aaagaatgtt 2701 tggcacacgc actgctgctt tgtctctaga gggccccccc aaagaacaca aatgcagagt 2761 ccaccaggct aaagccgcag gaaaagggcc cataggccat gatgacatgg ttgataaata 2821 tggtctatgt gagactgagg atgatgaaga agtagtccac actgagatac catctgccac 2881 catagaaggt aagaacaaag gaaagaacaa gaaagggcgc ggccgaaaga acaactataa 2941 cgccttttcc cgtagagggc tcaatgacga agagtacgag gagtacaaga aaatacggga 3001 agagaagggt ggaaattaca gcattcagga gtacctagag gatagacaaa ggtatgaaga 3061 ggagcttgct gaggttcaag caggtggaga tggaggaatc ggtgaaactg aaatggaaat 3121 ccgccataga gtgttctaca agtctaagag caagaaacac caccaggaag aacgacgcca 3181 actgggatta gtcacaggtt ctgacatccg gaaaagaaaa ccaattgact ggaccccccc 3241 taagtcagca tgggcagatg atgagcgtga agtggactac aatgagagga tcaactttga 3301 agcgcccccc actttgtgga gccgggtcac aaagtttgga tctgggtggg gcttctgggt 3361 cagtcccaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aagagttctt 3421 tggtgaaccc cttgctagca tagccatcca cagagccgga gaattcaccc tcttcaggtt 3481 ctctaagaag atcaggcccg atctcacggg tatgattctt gaggaaggtt gcccagaggg 3541 tacggtgtgc tcagtattaa taaaaaggga ctccggtgag ctactaccac tagctgtaag 3601 aatgggcgca atagcttcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat 3661 gttgctcact ggggcgaatg ctaagggcat ggacctcgga actattccag gggattgtgg 3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc acgctgctgc 3781 cactaaatca ggcaacacgg tggtgtgcgc cgtccaggct agtgaagggg aaaccacact 3841 tgaggggggt gacaaaggtc attatgccgg acatgagata atcaagcatg gatgtgggcc 3901 agccctgtca accaaaacaa agttctggaa atcgtcccct gaaccactac cccctggagt 3961 ctatgaacct gcatacctcg gtggccggga tccaagagtg agtggtggcc cctcgctcca 4021 acaggtgtta cgggatcagt taaagccatt tgctgagcca cgggggcgta tgccggaacc 4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac 4141 cccagtgccg tggagctaca gcgatgcatg tcaatcccta gataaaacta ctagttctgg 4201 tttcccccac cacaagaaga agaatgatga ttggaacggc accgccttca ttagagagtt 4261 gggagagcag gcagcgcacg ccaataatat gtacgaacaa gctaagagca tgaagcctat 4321 gtacacggcg gcgcttaaag atgaattggt gaaaccagaa aaagtgtacc aaaaagtgaa 4381 gaagcgcttg ctttgggggg cagatctagg aacagtgatc cgggccgcac gggcctttgg 4441 cccattctgt gatgccataa agtcccacac aattaaatta cctatcaaag ttggaatgaa 4501 ttcaatcgag gatgggccat taatttatgc agagcattca aaatataaat atcactttga 4561 tgcagactat acggcttggg actcaacaca aaataggcaa attatgactg aatcattctc 4621 aatcatgtgt cggctaactg cttctccaga attggcctca gtggtggcac aagatctgct 4681 tgcaccctca gaaatggacg ttggtgacta cgtcataaga gtgaaggaag gcctcccatc 4741 cggctttcca tgcacatcac aggtcaatag cataaaccat tggttgataa ccttgtgcgc 4801 cctctctgag gtgactggcc tgtcaccaga tgttatccag tccatgtcat acttttcttt 4861 ttatggtgat gatgaaatag tttctactga catagaattt gacccagcaa agctgacaca 4921 agtccttaaa gagtatggcc tcaaacccac ccgccctgac aagagtgaag gtccaataat 4981 tgtgaggaag agtgtggatg gcctggtctt cttacgtcgc accatttccc gcgacgccgc 5041 ggggttccag gggcgactgg accgagcatc cattgaaagg cagatctact ggaccagagg 5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aaattcagct 5161 gatatcactg ttaggtgagg cctcattgca tggtgaaaaa ttctacagga agatctcaag 5221 caaagtcatc caagagatta agacaggggg ccttgaaatg tatgtgccag ggtggcaagc 5281 catgttccgc tggatgcggt tccatgacct tggcctgtgg acaggagatc gcaatctcct 5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatccccc gatggcgcca 5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg 5461 ttgcgggtgc ttcaacagca gtcgcgacgg ctgggcaagt taatatgatt gacccatgga 5521 tttttaataa ctttgtccag gcacctcaag gagaattcac tatttcccct aataataccc 5581 ccggtgacat tttgtttgat ttacaattag gaccccacct taatccattt ctagcccacc 5641 tctcacagat gtacaatggt tgggtcggca atatgcgtgt gcgcatactg ttggccggga 5701 atgccttcac agctggaaag ataatcattt gctgtgtccc ccctggtttt gatgctagaa 5761 tactcacaat agctcaagca actcttttcc cacacttaat tgctgatgta aggacccttg 5821 agcctgtgga gcttcctctg gaggatgtgc gcaatgttct cttccacaac agtagccaac 5881 cgcagccaac aatgcggctg gttgctatgt tgtacactcc cctccgcact ggtggtggtt 5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtgct tacgtgcccc gctcccgact 6001 ttagttttct gtttcttgtc cctccttccg ttgaacaaaa gaccagagtt ttcagtgtcc 6061 ccaatatacc cctgaaggat ctctcaaatt cccgtgtccc tgtgcctgta cagggcatgt 6121 ttatgtcccc agatgttaat cagtcagtcc agtttcagaa tggacgctgc caaattgatg 6181 gccaactcca aggcaccact ccggtctcgc tcagccaact ctgcaagatc aggggtaaaa 6241 cttctagcaa tgctagggtg ctcaacttga gtgaggtaga tggcacaccc ttcatcccac 6301 ttgaatcacc agcgccagtt ggttttcccg acttgggagg ttgtgactgg catgtaaatt 6361 tcactttcca ggcccaagat caggacccat ctcaaagtgt aacctttgca actaatgatg 6421 ccagctttgt tccctatcta ggcagtatct ctcctcacaa tgggggagat tttcatgcag 6481 gcgacatcat aggtagcctt ggttggattt cagccccgtc tgataattca caacttaatg 6541 tttggacaat accaaagtat gggtctagtc tcccagatgt cactcatctt gcccctgctg 6601 tgttcccccc aggctttggg gaggtgatct tgtacttcta ctctaccttc ccaggttctg 6661 gacaatccag ccaactccaa gtcccatgtt tgttgcctca ggagttcatc acccacttct 6721 gtaatgaaca agctcccatc gctggggagg ccgccctcct ccactacgta gaccctgata 6781 cggggcgaaa cttgggggaa tttaaacttt atcctgatgg gttcatgacc tgtgtcccca 6841 atagtgttag cagtggccct caaacccttc ctatcaatgg agtctttgtc tttgtttcat 6901 gggtatctag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg 6961 gattgcggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg 7021 tagcatacta ggggcaggca tacaggctgg tgctgaggct ggtctccagg cccaacggta 7081 tcagcaggat ctgcagttgc aacaaaattc tttcaagcat gataaggaaa tgttaggcta 7141 ccaagttcag gctagtaatg ctcttttagc taagaatctt aacactagat atgctcttct 7201 gcaggcaggg ggcctatcta gcgctgatgc tgctcgggca gtggctggtg ctcctgtcac 7261 ccgtatagtg gactggaatg gcacgcgcat tgcagcgccc acctcaagca ccactacact 7321 cagatctggt ggtttcatgg ctgtccctat accattgtct tcaaagacca agcaaccagt 7381 gatgtctggg caggataatc caaattatgc tgcttcttct atctctagaa ctgcttcatg 7441 ggtgcaatct caaaattcta tgaggtctgt ttctcctttt cacagtgatg ctctgagaac 7501 cgtttgggtt acaccacccg gttcatcatc aacttcatct gtgcaatcta gtttctatgg 7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaataaa attttgtaat 7621 aggatgccag tgggcaccat attcagattt gatttttaat tggattgttt taattaaaat 7681 ttggcttaat tggtgttaaa a //