Typing tool
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Typing tool
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Complete norovirus genomes
| MZ227264 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS MZ227264 7706 bp RNA linear VRL 23-MAY-2021
DEFINITION Norovirus GI isolate Hu/US/2016/GI.6[P11]/CA-RGDS-1110, complete
genome.
ACCESSION MZ227264
VERSION MZ227264.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7706)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7706
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="CA-RGDS-1110"
/isolate="Hu/US/2016/GI.6[P11]/CA-RGDS-1110"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="22-Feb-2016"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GI.6[P11]"
gene 5..5371
/gene="ORF1"
CDS 5..5371
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVL01096.1"
/translation="MMMASNDAIATNVASNNNANNTSATSRFLSRFKGLGGGASPPNP
IKIKSTEMALGLIGKTTQEAVGASDPPPKQQRDRPPRTQEEVQYGMGWTERPVDQNVK
SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLRELENEPWPYAAITNNCF
EFCCQIMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFRSDFSHLKMELAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMEGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDMVDKYGLCETEDDEEVVHTEIPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLGDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLASI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
mat_peptide 5..1201
/gene="ORF1"
/product="p48"
mat_peptide 1202..2290
/gene="ORF1"
/product="NTPase"
mat_peptide 2291..2887
/gene="ORF1"
/product="p22"
mat_peptide 2888..3301
/gene="ORF1"
/product="VPg"
mat_peptide 3302..3844
/gene="ORF1"
/product="Pro"
mat_peptide 3845..5368
/gene="ORF1"
/product="RdRp"
gene 5355..6977
/gene="ORF2"
CDS 5355..6977
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVL01097.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="ORF3"
CDS 6977..7606
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVL01098.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 attaatgatg atggcgtcta acgacgctat tgcgactaat gttgcaagca ataacaacgc
61 taacaacact agtgctacat ctcgattttt gtcgagattt aagggtttag gtggtggcgc
121 gagcccccct aaccccataa agatcaaaag tacagaaatg gccttgggtt tgattggcaa
181 gacaacccaa gaggcagtag gggccagtga cccaccgcct aaacagcaaa gagaccgacc
241 ccccagaacc caagaggaag ttcagtacgg catggggtgg actgaaaggc ccgtggacca
301 gaatgttaag tcatgggagg aacttgacac ctccaccaag gaagagattc tggacagcca
361 caaagaatgg ttcgatgctg gcggtttggg cccatgcact atgccctcaa cttgtgaaca
421 ggctaaagat gatagcccac ctggtgagca agtcagatgg tcagcgcgtg atggagtcaa
481 ccttggagtg aaccgtctca cgacggtgag tggccccgag tggaacctct gccctctacc
541 ccccattgac ctaaggaata tggaaccagc tagtgaaccc accattggag acatgataga
601 gttttatgaa ggtcatatct accactactc catatacatt gggcaaggaa agacagttgg
661 tgtacattcc ccacaggcag cattctcagt ggctagagta accatccaac ctatagctgc
721 ttggtggagg gtttgttata taccccagcc caaacataga ctgagttatg accagcttag
781 ggaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgtt ttgagttttg
841 ctgtcaaatt atgaaccttg aggacacatg gttgcagagg cggctaataa catcaggtag
901 attccaccac ccttcccagt cttggtcaca acagacccct gaatttcagc aggacagtaa
961 actggaactg gttagggatg ctatattggc tgcggtgaat ggccttgttt cacaaccctt
1021 caagaatttc ttgggcaagc tcaagcctct taatgtatta aacatcctat ctaactgtga
1081 ctggactttt atgggggtgg tagagatggt tatactactt cttgagctct ttggcgtgtt
1141 ttggaacccg cccgatgtgt ctaattttat agcatctctc ctccctgact tccacctcca
1201 ggggccagaa gacctggccc gggatttggt gccagtcatt cttggtggca taggattagc
1261 cattggattt accagagaca aagtcaccaa ggtcatgaag agtgctgtgg atggactccg
1321 ggccgctaca cagttggggc aatacgggtt agaaatattc tcactcctca agaagtattt
1381 ctttggtggg gatcaaactg aacgaaccct caaaggcatt gaagcagcag tcatagatat
1441 ggaggttttg tcctctacat cagtgacaca attggtgaga gacaagcagg cagctaaagc
1501 ttatatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc
1561 tgacccccat gtaatatcct caacaaatgc cctaatatca cgtatagcca tggcgcgatc
1621 cgctctggct aaggctcaag ctgagatgac cagccgaatg aggccagttg tcatcatgat
1681 gtgtggacct cctggaattg ggaagactaa agcagcggaa cacttagcaa aacgtctagc
1741 taatgagatc aggcctggcg gcaaagtggg actggtacca cgtgaggctg ttgaccactg
1801 ggatggttac catggtgagg aagtgatgct atgggatgac tatggtatga caaagataca
1861 agatgactgc aacaagctcc aggctattgc tgactctgcc ccactcactc tcaattgtga
1921 taggattgaa aataaaggga tgcagtttgt gtcagatgca atagtcatca ccaccaatgc
1981 tccagggcct gcccctgtgg attttgtcaa ccttggcccc gtgtgtagac gggttgactt
2041 cctggtctac tgttccgccc cagaggtaga gcagataagg agagtcagcc ctggagacac
2101 gtcggcactt aaagactgct tcaggtcaga tttctcccac ctgaagatgg agttagctcc
2161 tcaagggggg tttgacaacc aggggaacac accattcggc aagggtgtca tgaaaccaac
2221 aaccatcaat aggctcctca tacaagctgt ggctctcacc atggagagac aggatgagtt
2281 ccgtctccaa gggaagatgt atgattttga tgatgatagg gtgtcagcct ttaccaccat
2341 ggcacgcgat aatggattgg gcatcctgag catggcgagc ctaggcaaga agctgcgcgg
2401 tgtcacatcg atggaaggtc tgaagaatgc tttgaaaggg tataaaattg gtgcgtgcac
2461 aattaagtgg caggccaagg tctattcact agagtcagat ggcaacagtg ttaacatcag
2521 ggaggagaag aatgtcttaa ctcaacaaca gcagtcggtg tgcgctgcct ctattgcact
2581 cacccgtctg cgggccgcac gcgcggtggc gtatgcgtca tgcattcaat cagccataac
2641 ctccatacta caaattgctg cctctgccct agtggtcaac agggccgtga aaagaatgtt
2701 tggcacacgc actgctgctt tgtctctaga gggccccccc aaagaacaca aatgcagagt
2761 ccaccaggct aaagccgcag gaaaagggcc cataggccat gatgacatgg ttgataaata
2821 tggtctatgt gagactgagg atgatgaaga agtagtccac actgagatac catctgccac
2881 catagaaggt aagaacaaag gaaagaacaa gaaagggcgc ggccgaaaga acaactataa
2941 cgccttttcc cgtagagggc tcaatgacga agagtacgag gagtacaaga aaatacggga
3001 agagaagggt ggaaattaca gcattcagga gtacctaggg gatagacaaa ggtatgaaga
3061 ggagcttgct gaggttcaag caggtggaga tggaggaatc ggtgaaactg aaatggaaat
3121 ccgccataga gtgttctaca agtctaagag caagaaacac caccaggaag aacgacgcca
3181 actgggatta gtcacaggtt ctgacatccg gaaaagaaaa ccaattgact ggaccccccc
3241 taagtcagca tgggcagatg atgagcgtga agtggactac aatgagagga tcaactttga
3301 agcgcccccc actttgtgga gccgggtcac aaagtttgga tctgggtggg gcttctgggt
3361 cagtcccaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aagagttctt
3421 tggtgaaccc cttgctagca tagccatcca cagagccgga gaattcaccc tcttcaggtt
3481 ctctaagaag atcaggcccg atctcacggg tatgattctt gaggaaggtt gcccagaggg
3541 tacggtgtgc tcagtattaa taaaaaggga ctccggtgag ctactaccac tagctgtaag
3601 aatgggcgca atagcttcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat
3661 gttgctcact ggggcgaatg ctaagggcat ggacctcgga actattccag gggattgtgg
3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc acgctgctgc
3781 cactaaatca ggcaacacgg tggtgtgcgc cgtccaggct agtgaagggg aaaccacact
3841 tgaggggggt gacaaaggtc attatgccgg acatgagata atcaagcatg gatgtgggcc
3901 agccctgtca accaaaacaa agttctggaa atcgtcccct gaaccactac cccctggagt
3961 ctatgaacct gcatacctcg gtggccggga tccaagagtg agtggtggcc cctcgctcca
4021 acaggtgtta cgggatcagt taaagccatt tgctgagcca cgggggcgta tgccggaacc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac
4141 cccagtgccg tggagctaca gcgatgcatg tcaatcccta gataaaacta ctagttctgg
4201 tttcccccac cacaagaaga agaatgatga ttggaacggc accgccttca ttagagagtt
4261 gggagagcag gcagcgcacg ccaataatat gtacgaacaa gctaagagca tgaagcctat
4321 gtacacggcg gcgcttaaag atgaattggt gaaaccagaa aaagtgtacc aaaaagtgaa
4381 gaagcgcttg ctttgggggg cagatctagg aacagtgatc cgggccgcac gggcctttgg
4441 cccattctgt gatgccataa agtcccacac aattaaatta cctatcaaag ttggaatgaa
4501 ttcaatcgag gatgggccat taatttatgc agagcattca aaatataaat atcactttga
4561 tgcagactat acggcttggg actcaacaca aaataggcaa attatgactg aatcattctc
4621 aatcatgtgt cggctaactg cttctccaga attggcctca gtggtggcac aagatctgct
4681 tgcaccctca gaaatggacg ttggtgacta cgtcataaga gtgaaggaag gcctcccatc
4741 cggctttcca tgcacatcac aggtcaatag cataaaccat tggttgataa ccttgtgcgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttatccag tccatgtcat acttttcttt
4861 ttatggtgat gatgaaatag tttctactga catagaattt gacccagcaa agctgacaca
4921 agtccttaaa gagtatggcc tcaaacccac ccgccctgac aagagtgaag gtccaataat
4981 tgtgaggaag agtgtggatg gcctggtctt cttacgtcgc accatttccc gcgacgccgc
5041 ggggttccag gggcgactgg accgagcatc cattgaaagg cagatctact ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aaattcagct
5161 gatatcactg ttaggtgagg cctcattgca tggtgaaaaa ttctacagga agatctcaag
5221 caaagtcatc caagagatta agacaggggg ccttgaaatg tatgtgccag ggtggcaagc
5281 catgttccgc tggatgcggt tccatgacct tggcctgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatccccc gatggcgcca
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcgacgg ctgggcaagt taatatgatt gacccatgga
5521 tttttaataa ctttgtccag gcacctcaag gagaattcac tatttcccct aataataccc
5581 ccggtgacat tttgtttgat ttacaattag gaccccacct taatccattt ctagcccacc
5641 tctcacagat gtacaatggt tgggtcggca atatgcgtgt gcgcatactg ttggccggga
5701 atgccttcac agctggaaag ataatcattt gctgtgtccc ccctggtttt gatgctagaa
5761 tactcacaat agctcaagca actcttttcc cacacttaat tgctgatgta aggacccttg
5821 agcctgtgga gcttcctctg gaggatgtgc gcaatgttct cttccacaac agtagccaac
5881 cgcagccaac aatgcggctg gttgctatgt tgtacactcc cctccgcact ggtggtggtt
5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtgct tacgtgcccc gctcccgact
6001 ttagttttct gtttcttgtc cctccttccg ttgaacaaaa gaccagagtt ttcagtgtcc
6061 ccaatatacc cctgaaggat ctctcaaatt cccgtgtccc tgtgcctgta cagggcatgt
6121 ttatgtcccc agatgttaat cagtcagtcc agtttcagaa tggacgctgc caaattgatg
6181 gccaactcca aggcaccact ccggtctcgc tcagccaact ctgcaagatc aggggtaaaa
6241 cttctagcaa tgctagggtg ctcaacttga gtgaggtaga tggcacaccc ttcatcccac
6301 ttgaatcacc agcgccagtt ggttttcccg acttgggagg ttgtgactgg catgtaaatt
6361 tcactttcca ggcccaagat caggacccat ctcaaagtgt aacctttgca actaatgatg
6421 ccagctttgt tccctatcta ggcagtatct ctcctcacaa tgggggagat tttcatgcag
6481 gcgacatcat aggtagcctt ggttggattt cagccccgtc tgataattca caacttaatg
6541 tttggacaat accaaagtat gggtctagtc tcccagatgt cactcatctt gcccctgctg
6601 tgttcccccc aggctttggg gaggtgatct tgtacttcta ctctaccttc ccaggttctg
6661 gacaatccag ccaactccaa gtcccatgtt tgttgcctca ggagttcatc acccacttct
6721 gtaatgaaca agctcccatc gctggggagg ccgccctcct ccactacgta gaccctgata
6781 cggggcgaaa cttgggggaa tttaaacttt atcctgatgg gttcatgacc tgtgtcccca
6841 atagtgttag cagtggccct caaacccttc ctatcaatgg agtctttgtc tttgtttcat
6901 gggtatctag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gattgcggcg catataatgg cccaagctgt catcggtgcc atagccgcat ctgccgctgg
7021 tagcatacta ggggcaggca tacaggctgg tgctgaggct ggtctccagg cccaacggta
7081 tcagcaggat ctgcagttgc aacaaaattc tttcaagcat gataaggaaa tgttaggcta
7141 ccaagttcag gctagtaatg ctcttttagc taagaatctt aacactagat atgctcttct
7201 gcaggcaggg ggcctatcta gcgctgatgc tgctcgggca gtggctggtg ctcctgtcac
7261 ccgtatagtg gactggaatg gcacgcgcat tgcagcgccc acctcaagca ccactacact
7321 cagatctggt ggtttcatgg ctgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggataatc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgaggtctgt ttctcctttt cacagtgatg ctctgagaac
7501 cgtttgggtt acaccacccg gttcatcatc aacttcatct gtgcaatcta gtttctatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaataaa attttgtaat
7621 aggatgccag tgggcaccat attcagattt gatttttaat tggattgttt taattaaaat
7681 ttggcttaat tggtgttaaa aaaaaa
//