Typing tool
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Typing tool
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Complete norovirus genomes
| MZ220331 | GI.1 | |
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| GI.P1 |
ORF1: 5..5374
ORF2: 5358..6950
ORF3: 6950..7588
LOCUS MZ220331 7663 bp RNA linear VRL 22-MAY-2021
DEFINITION Norovirus GI isolate Hu/US/2015/GI.1[P1]/CA-RGDS-1103, complete
genome.
ACCESSION MZ220331
VERSION MZ220331.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7663)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7663
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="CA-RGDS-1103"
/isolate="Hu/US/2015/GI.1[P1]/CA-RGDS-1103"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="29-Jul-2015"
/note="Amplicon sequencing: first 35 nt does represent
primer sequence;
genotype: GI.1[P1]"
gene 5..5374
/gene="ORF1"
CDS 5..5374
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVK11257.1"
/translation="MMMASNDAIPTAASSENANNNSSIKSRLLARLKGVSGTTTPPNS
IQITNQNMALGLIGQAPAPKATAVEAPKQQRDRPPRTAAEVQQNLCWTEKPQDQNVKA
WDELDHTTKQQILDEHAEWFDAGGLGPSTLPSNHERHPNDDSGGHQVKWSAKEGVNLG
IDGLTTVPGPEWNMCPLPPADQRSTTPAVEPIIGDMIEFYEGHIYHYAIYIGQGKTVG
VHSPQAAFSITRITIQPISAWWRVCYVPQPKQRLTYDQLKELENEPWPYAAVTNNCFE
FCCQVMCLEDTWLQRKLISSGRFHHPTQDWSRDTPEFQQDSKLEMVRDAVLAAINGLV
SRPFKDLLGKLKPLNVLNLLSNCDWTFMGVVEMVVLLLELFGVFWNPPDVSNFIASLL
PDFHLQGPEDLARDLVPVVLGGIGLAIGFTRDKVSKMMKNAVDGLRAATQLGQYGLEI
FSLLKKYFFGGDQTEKTLKDIESAVIDMEVLSSTSVTQLVRDKQSARAYMAILDNEEE
KARKLSVRNADPHVVSSTNALISRISMARAALAKAQAEMTSRMRPVVIMMCGPPGIGK
TKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQEDCNKL
QAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYC
TAPEVEHTRKVSPGDTNALKDCFKSDFSHMKMELAPQGGFDNQGNTPFGKGVMKPTTI
NRLLIQAVALTMERQDEFQLQGPTYDFDTDRVSAFTKMARANGIGLVSMASLGKKLRG
VSTIEGLKNALLGYKIAKCSIQWQSRVYIIESDGSNVHIKEDKQALTPLQQTINTASL
AITRLKAARAVAYASCFQSAVTTILQMAGSALVINRAVKRMFGTRTAAMALEGPEKEH
NCRVHKAKEAGKGPIGHDDMIEKFGLCETEEEESEDQIQMTPNDAIPEGKNKGKTKKG
RGRKNNYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGD
GGIGETEMEIRHRVFYKSKSRKHQQEQRRQLGLVTGSDIRKRKPIDWTPPKNEWADDD
REVDYNEKINFEAPPTMWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLTN
IAIHQAGEFTQFRFSKKIRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAI
ASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAATK
SGNTVVCAVQASEGETALEGGDKGHYAGHEIVRHGNGPALSTKTKFWRSSPEPLPPGV
YEPAYLGGKDPRVQNGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTM
DTPSPWSYADACQSLDKTTSSGFPYHKRKNDDWNGTTFVRELGDQAAHANNMYENGKH
MKPIYTAALKDELVKPEKVYQKIKKRLLWGADLGTVIRAARAFGPFCDAIKPHVIKLP
IKVGMNTIEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRLTASPELA
EVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSEATGLSPD
VVQAMSYFSFYGDDEIVSTDIDFDPARLTQILKEYGLRPTRPDKTEGPIQVRRNVDGL
VFLRRTISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQLISLLGE
ASLHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFV
NDDGV"
mat_peptide 5..1198
/gene="ORF1"
/product="p48"
mat_peptide 1199..2287
/gene="ORF1"
/product="NTPase"
mat_peptide 2288..2890
/gene="ORF1"
/product="p22"
mat_peptide 2891..3304
/gene="ORF1"
/product="VPg"
mat_peptide 3305..3847
/gene="ORF1"
/product="Pro"
mat_peptide 3848..5371
/gene="ORF1"
/product="RdRp"
gene 5358..6950
/gene="ORF2"
CDS 5358..6950
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVK11258.1"
/translation="MMMASNDAMSNVDGASGAGQLVPEANTSDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQSTLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPIGSMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSQVGKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQ
FGHSSQTQFDVDTTPETFVPHLGSIQAGGIGSGNYIGVLSWISPPSHPSGSQVDLWKI
PNYGSSVTEATHLAPSVFPPGFGEVLVFFMSKIPGPGAYNLPCLLPQEYISHFASEQA
PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGSSSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASSARGRLGLRR"
gene 6950..7588
/gene="ORF3"
CDS 6950..7588
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVK11259.1"
/translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN
SFKHDKEMIGYQVEASNQLLAKNLATRYSLLRAGGLSSADAARSIAGAPVTRIVDWNG
VRVSAPESSATTLRSGGFMSVPIPYASKQKQIQSSGISNPNYSPSSISRTTSWVESQN
SSRFGNLSPYHTEALNTVWLTPPGSTASSTLSSVPRGYFNTDRLPLFANNRR"
ORIGIN
1 gttattgatg atggcgtcta acgacgctat tcctactgct gctagcagtg aaaatgctaa
61 caacaacagt agtatcaagt ctcgcctatt ggcgagactt aaaggtgtga gtggaacaac
121 gactccacct aattctatac aaataactaa ccaaaatatg gctttggggc tgattggcca
181 ggccccagca ccaaaggcca cggccgtgga ggcccccaag caacagaggg ataggcctcc
241 gcggactgct gccgaagtcc aacaaaactt atgttggacc gaaaaaccgc aagaccaaaa
301 tgtcaaggcg tgggatgaac tagaccatac aacaaaacaa cagatacttg atgagcatgc
361 tgaatggttt gatgctggtg gtttgggccc aagcacactc cctagcaacc acgaacgcca
421 cccaaacgat gatagtggag gccaccaagt taaatggtcg gctaaagagg gtgtgaatct
481 cggaatagat ggactcacta ctgttcccgg acccgagtgg aacatgtgcc cgttaccccc
541 agcagatcaa aggagcacga cgcctgcagt cgagcccata ataggtgaca tgatcgagtt
601 ttatgaaggt cacatctacc attatgccat ctatatcggt caaggcaaga cagtgggtgt
661 ccattctcct caagcagcat tctcaataac aagaatcacc atacaaccta tatcagcatg
721 gtggcgggta tgctatgtcc cacagccaaa acagagactt acatatgatc aactcaaaga
781 attggagaac gaaccatggc catacgccgc ggtcaccaat aactgttttg aattctgttg
841 ccaggttatg tgtctagaag acacttggct acaaagaaag ctcatctcct ctggacgatt
901 ccaccatcca acccaggatt ggtctcgtga cactccagag ttccaacaag acagtaaact
961 tgagatggtc agagatgcag tgttagccgc gataaatggg ttagtgtcgc ggccctttaa
1021 ggatctccta ggcaaactta aacctttgaa tgtgctcaac ttgctttcaa actgtgattg
1081 gacatttatg ggggttgtgg aaatggtggt ccttcttttg gagctttttg gagtgttttg
1141 gaatccaccc gatgtgtcca attttatagc ttcactccta ccagattttc acctacaggg
1201 ccctgaagac cttgctagag accttgtgcc agtggtcttg ggcggtattg gtctggccat
1261 aggatttact agggacaagg tgagtaagat gatgaagaat gctgtcgacg gactgcgggc
1321 tgcaacccag ctcgggcagt atggcctgga aatattctca ctattaaaga agtacttctt
1381 tggtggagac cagacagaga agaccctaaa agatatagaa tcagctgtca ttgacatgga
1441 ggtgttgtca tccacctcag tgacccagct cgtgagggat aagcaatctg cgcgggctta
1501 catggctatc ttggataatg aagaagaaaa agctagaaag ctgtccgtca ggaatgctga
1561 tccacacgtg gtatcttcta ccaatgctct catatcccga atatcaatgg ctagagccgc
1621 cctagccaag gcccaggctg agatgactag caggatgcgt cctgtagtca ttatgatgtg
1681 tgggccccct ggcataggaa agaccaaggc agcggaacac ctggccaaac ggttggccaa
1741 cgaaatacgg cctggcggca aagttggact agtcccacgt gaagctgtgg accattggga
1801 tggttatcat ggtgaggaag tgatgttatg ggatgactat gggatgacca aaatacagga
1861 ggattgcaac aaactacaag ccatagctga ctcggccccc ctgacgctca attgtgaccg
1921 aatagagaat aaagggatgc aattcgtgtc tgatgccata gtcataacca ctaatgcccc
1981 tggcccagcc cccgtggact ttgtcaacct cggacctgtc tgtcgaaggg tggacttcct
2041 tgtgtactgt acggcaccag aagtggaaca tacgaggaaa gttagccctg gcgacactaa
2101 tgcactaaag gactgtttta aatctgactt ttctcacatg aaaatggaac tcgcccccca
2161 gggtggtttt gataaccaag ggaacacccc gtttggcaag ggtgtaatga aaccaaccac
2221 cataaatagg ttactaatcc aagctgtggc cttaacaatg gagaggcagg atgagttcca
2281 acttcaaggt cccacttatg actttgacac tgatagggtc tctgcattta caaagatggc
2341 ccgagctaat gggataggtc ttgtatccat ggcctcctta ggcaagaaat tgcgtggggt
2401 ttccaccatt gaaggcttga agaatgccct tctgggatac aagatagcaa agtgcagcat
2461 acagtggcag tcaagggtgt acatcataga atcagatggt agtaatgtac acatcaagga
2521 ggacaagcag gctctaaccc ccttacaaca gacaattaac acagcctcct tggctatcac
2581 acggcttaaa gcggctagag ctgtggctta cgcctcatgc ttccaatctg ctgtcaccac
2641 catattacaa atggcagggt ccgcattggt catcaatcgg gcagtcaagc gcatgtttgg
2701 tacccgtacg gcagccatgg cgctagaggg accagaaaaa gaacacaatt gcagggttca
2761 taaagctaag gaagctggga aggggcctat aggacatgat gacatgatag aaaagttcgg
2821 cctgtgtgag actgaagagg aagaaagcga agaccaaatc caaatgaccc caaatgatgc
2881 cattccagaa gggaagaaca aaggtaagac caagaaaggc cgcggccgca aaaacaatta
2941 caatgcattc tctcgacgtg ggctgagtga tgaggagtat gaagaataca aaaagatcag
3001 ggaagagaag aatggtaatt acagcataca agaatatttg gaggatcgtc aacggtatga
3061 ggaagagttg gcagaggtcc aagcaggtgg cgacggtggt ataggggaga ctgagatgga
3121 gattcgccac agagttttct acaaatccaa aagcagaaag caccaacagg aacaacgacg
3181 tcaacttggc ctggtaactg gatcggatat caggaaacgc aagcctattg attggacccc
3241 accaaagaat gaatgggctg atgatgatag ggaagttgac tataatgaaa agatcaattt
3301 tgaggccccc ccaacaatgt ggagccgggt tacaaagttt gggtcaggat ggggcttctg
3361 ggtcagtcca accgtgttca ttaccaccac acatgtggtg ccaactggcg tgaaggaatt
3421 ctttggcgaa cctctcacca atatagcaat ccatcaagca ggtgagttca cacagttcag
3481 gttctctaag aagatacgcc ctgacctgac gggcatggtg ttggaggaag gctgtcctga
3541 agggacagtt tgttcagtcc tgatcaaacg agactcaggc gagcttctcc cactggctgt
3601 ccgtatgggg gccattgcct ctatgaggat acagggccgc cttgttcatg gccaatcagg
3661 aatgctactg acaggagcga atgcaaaagg gatggacctt ggaactatac caggggactg
3721 tggagcacca tacgtccaca agcgcggtaa cgactgggtt gtgtgcggag tccacgctgc
3781 agccacaaaa tcaggtaaca ctgtggtctg tgctgtgcag gctagtgaag gtgagaccgc
3841 gttagaaggc ggagacaaag ggcactatgc gggtcatgaa attgtaaggc acgggaatgg
3901 cccggcattg tcaactaaaa caaaattctg gagatcctcc ccagagccat tgccccctgg
3961 agtttatgag cctgcatacc taggaggaaa ggacccacgt gtccagaatg gtccttccct
4021 ccaacaggtt ctgcgtgacc aattgaaacc ctttgcagag ccccgtggcc gcatgcctga
4081 acctggtttg ctggaggcgg cggtcgagac tgtaacatcc atgttagaac aaacaatgga
4141 cactccaagc ccatggtctt atgctgatgc ctgtcaatct cttgataaaa ctacaagttc
4201 aggctttccc taccacaaaa ggaagaatga tgattggaac ggtactacct ttgtcaggga
4261 gcttggtgat caggccgcac atgctaacaa catgtatgag aatggcaaac acatgaaacc
4321 catctacaca gcagctttga aggatgagct agtcaaaccc gaaaaggtct accaaaagat
4381 caaaaagcgc ctattatggg gtgccgacct cggaactgta atcagagctg cccgagcttt
4441 tggcccattc tgtgatgcta taaagccgca tgtcatcaag ctaccaataa aggttggcat
4501 gaacacaata gaagatggcc ccctgattta tgctgagcat gccaagtaca aaaaccactt
4561 tgatgcggat tacacagcat gggactcaac acagaataga caaattatga cagaatcttt
4621 ctccattatg tcacgcctaa cggcctctcc tgagctggcc gaagtcgtgg cccaagattt
4681 attggcacca tctgagatgg atgtgggtga ctatgtcata agagttaagg aaggcttacc
4741 atctgggttc ccgtgtactt cccaagtgaa cagcataaat cattggataa ttaccctctg
4801 tgcactttct gaagccactg gtctgtcacc tgacgtagtg caagccatgt catacttctc
4861 attttatggc gatgatgaaa ttgtgtcaac tgacatagat tttgacccag cccgcctcac
4921 ccaaatcctt aaggaatatg gtctcaggcc aacaaggcca gataaaactg aagggccaat
4981 acaggtcagg aggaatgtgg atggactagt tttcttgcgc cgcaccatct cccgtgacgc
5041 tgcagggttc cagggcaggc tagatagggc ctcaattgaa cggcagattt tctggacccg
5101 cgggcccaac cattcagacc cttcagagac attggtgccg cacacccaaa gaaaagtgca
5161 attgatctca ctcttaggag aggcttcact ccatggagaa aagttctata gaaagatttc
5221 cagcaaagtc atacatgaaa ttaagactgg tgggttggag atgtatgtcc cagggtggca
5281 ggccatgttc cgctggatgc gcttccatga cctcggactg tggacaggag atcgcaatct
5341 tctgcccgaa ttcgtgaatg atgatggcgt ctaacgacgc tatgtcaaac gtggatggcg
5401 ccagtggcgc tggtcagttg gtaccggagg ctaatacttc tgaccccctt gcaatggatc
5461 ctgtggcagg ttcttcgacg gcggttgcga ctgctggaca agtaaacccc attgatcctt
5521 ggataattaa taattttgtg caagctcccc aaggggagtt cacaatctct ccaaataata
5581 cccccggtga tgttttattt gatctgagtt taggtcccca ccttaatccc ttcttgctac
5641 atctgtcaca aatgtataat ggttgggttg gcaatatgag agttaggatt atgctggccg
5701 gcaacgcctt tactgcaggt aagatcatag tttcctgtat acctcctggt tttgggtcgc
5761 ataatcttac tatagcacaa tcaactctat ttccacatgt gattgctgat gttaggactc
5821 tagaccctat tgaagtacct ttggaagatg ttaggaatgt tctctttcat aataatgata
5881 ggaatcaaca aactatgcgc cttgtgtgca tgttatatac ccctctccgc actggtggtg
5941 gtacaggtga ttcctttgtt gtggcggggc gagtcatgac ctgccctagt cctgatttta
6001 atttcttgtt cttggtcccc cccacagtgg agcagaaaac tagacctttc acccttccaa
6061 atttgccttt gagctctttg tctaattcac gtgctccact cccaattggc agcatgggca
6121 tttctccaga caatgttcag agtgtacaat tccaaaatgg tcggtgcact ttggacggtc
6181 gtttggttgg caccacccca gtttcactgt cccaggttgg taagataagg ggtacttcca
6241 atggtactgt catcaacctt actgaattgg atggcacgcc ttttcaccct tttgaaggcc
6301 ctgcccccat tggattccca gatctcggtg gttgcgactg gcatatcaac atgacacaat
6361 ttggccactc tagtcagaca caatttgatg tggataccac ccctgaaacc tttgtccccc
6421 atttaggatc aatccaggca ggtggtattg gtagtggcaa ttacattggt gttctcagtt
6481 ggatctcccc cccatcacat ccttctggtt cccaggtaga cctttggaag atccccaatt
6541 atgggtcgag cgttactgag gcaacacacc tggccccatc agtgttccca cccggctttg
6601 gggaagtgct ggttttcttc atgtcgaaga taccagggcc tggcgcctac aatctgccct
6661 gcctgctgcc acaagagtac atctcacact ttgcaagtga gcaagccccc actgtgggtg
6721 aggctgctct gctccattat gttgaccctg atacagggcg gaaccttggg gagttcaaag
6781 cataccccga tggatttctc acttgtgtcc ccaatggatc cagctcgggt ccacaacagt
6841 taccaatcaa tggagttttt gtttttgtct cttgggtgtc taggttctat caattgaagc
6901 ctgtgggaac tgccagttcg gcaagaggta ggcttggatt gcgccgataa tggctcaagc
6961 tataattggt gcaattgctg cctccacagc gggcagtgcc cttggggcag gtatacaggt
7021 tggtggtgag gcagcactcc aaagtcaaag atatcaacaa aatctgcaat tgcaagagaa
7081 ttcctttaaa catgacaaag aaatgattgg atatcaagtt gaggcttcaa atcaattgct
7141 agccaagaat cttgcaacca gatactcact ccttcgtgct ggaggtctat ccagtgctga
7201 tgcagcaagg tccatcgcgg gagccccagt gacccgaatc gtggactgga atggtgtgag
7261 agtgtcagct cctgaatctt ctgcaactac attgagatct ggtggcttta tgtcagtgcc
7321 aataccatat gcatctaagc aaaaacaaat tcaatcatct ggcattagta atccaaatta
7381 ttctccttct tccatttctc gaaccactag ttgggttgaa tcacaaaatt catcaagatt
7441 tgggaatcta tccccatacc atacagaggc ccttaataca gtgtggttga ccccacctgg
7501 ttcaacagca tcctccacac tgtcctctgt gccacgtggt tatttcaata cagatagatt
7561 gccattgttc gcaaacaata ggcgataatg ttgtaatatg aaatgtgggc atcatattca
7621 gttaattagg cttaattagg tttgatttga tgttaaaaaa aaa
//