Typing tool
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Typing tool
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Complete norovirus genomes
| MZ215727 | GI.7 | |
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| GI.P7 |
ORF1: 1..5397
ORF2: 5381..6997
ORF3: 6997..7644
LOCUS MZ215727 7644 bp RNA linear VRL 26-MAY-2021
DEFINITION Norovirus GI isolate Hu/US/2014/GI.7[P7]/CA-RGDS-1100 nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MZ215727
VERSION MZ215727.2
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7644)
AUTHORS Pan,C.-Y., Huynh,T., Padilla,T., Montmayeur,A.M., Chhabra,P.,
Barclay,L., Vinje,J., Wadford,D.A. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (14-MAY-2021) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT On May 26, 2021 this sequence version replaced MZ215727.1.
##Assembly-Data-START##
Assembly Method :: Geneious v. R10; SPades v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7644
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Hu/US/2014/GI.7[P7]/CA-RGDS-1100"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/collection_date="05-Feb-2014"
/note="genotype: GI.7[P7]"
gene 1..5397
/gene="ORF1"
CDS 1..5397
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QVJ79526.2"
/translation="MMMASNDAIAAADVSKQDANTNNEKIGSRLMAKLKERISSQRGE
GTTKIKNTEMALDLIRRSQTPSPTRSDPPPKAQRDRPPRTVSEVKQVLGWDGPASKDY
GARAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCDTPERDDGCHPVKWSES
TGVDIGVDSLTTVTGPVWNMCPLPPIDTRNNGPASEPRIGDMIEFYEGHIFHYAIYLG
QGKTIGVHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLKELENEPWPYASV
TNNCYEFCCRVMSLDDSWLQRKLVTSGRFNHPTQEWSKETPDFHQDSKLEIVRDAILS
AINGLVSQPFKNILSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPPDISN
FIASLLPDFHLQGPEDLARDLIPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLG
QYGLEVFSIIKKYFFGGDQTEKTLKGIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI
LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTNRARPVVIMMCG
PPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPLTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCSAPEIEQTRRTHPGDTNAIKNLFKPDFSHLKMEIAPQGGFDNQGNTPFGKGT
MKSTTLNRLLIQAVALTMERQDEFQMQGAVYNFDEDRVTAFTSLARANGLGLLSMAAL
GKKLRSVNNMEGLRNALKGYKITPCDIVWNNRTYTIKADGSNVSVTEKQAAATIQQQA
TSSVTLALSRLRAARALAYASCFQSAVTTILQMAGSAVVISRAVKRMFGTHTNQPTLE
GKPREHNCRVHRAEREGRGPIGHDGIIERYGLCETDQEEEEKIEMEVPTADKEGKNKG
KNKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKSGIRKQRQEERRQLGLITGTEIRKRKPIDWTPPK
NDWSEDTRQVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPDAKEV
FGERLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCG
VHAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKS
TPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVET
VTNVLEQTMDTPVPWSYNDACMSLDKTTSSGYPHHKRKNDDWNGNAFVRELGEQAAHA
NNMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCAL
SEVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKSEGPI
IVKQQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRK
IQLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTG
DRNLLPDYVNDDGV"
mat_peptide 1..1212
/gene="ORF1"
/product="p48"
mat_peptide 1213..2301
/gene="ORF1"
/product="NTPase"
mat_peptide 2302..2901
/gene="ORF1"
/product="p22"
mat_peptide 2902..3321
/gene="ORF1"
/product="VPg"
mat_peptide 3322..3864
/gene="ORF1"
/product="Pro"
mat_peptide 3865..5394
/gene="ORF1"
/product="RdRp"
gene 5381..6997
/gene="ORF2"
CDS 5381..6997
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QVJ79527.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLQHLSQMYNG
WVGNMRIRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMAVSADQSQVVQFQNGRCTLEGQ
LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH
VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQHPSGDQLGTLTWISPLNNAS
RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTTQIPCTLPQEF
ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FIFSSWVSRYYQLKPVGTAGPARRLGVRRI"
gene 6997..7644
/gene="ORF3"
CDS 6997..7644
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QVJ79528.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNVLLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG
VRIAAPASTATTLRSGNFMSIPVTPKKEPQKLPARSVGLSNPNYDSSTMISRTTQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK"
ORIGIN
1 atgatgatgg cgtctaacga cgctattgcc gctgctgatg tcagcaaaca agatgctaac
61 accaacaacg aaaagatcgg ttctcgcctt atggcgaaac tgaaagagcg tataagctct
121 caacgtggtg aaggaaccac gaagatcaag aacactgaaa tggcactgga tctgatacgt
181 aggtcccaaa caccatcgcc aacgcgctca gacccccctc ctaaggcgca acgcgatcgc
241 cctccaagga cagtatcaga agtcaagcaa gttttgggtt gggatggccc tgccagtaag
301 gattatgggg cccgagcatg gtgcgattta acagctgagg agaagaagga aatcctggac
361 aacaacgagc gcctctttga tgctggcggc gtgactcctt cgacagtacc aagcactttt
421 gagaggtgtg atacacctga gcgagacgac ggctgtcacc ctgtcaaatg gagcgagtca
481 acgggagtgg atataggagt ggattctctg accactgtta caggtccagt gtggaacatg
541 tgcccccttc caccaattga tacacgcaat aatggcccag caagtgagcc acgcattgga
601 gacatgatag aattttatga agggcacata ttccattatg ccatatatct tggtcaaggg
661 aagaccatag gggtccactc tcctcaggca gctttttcca tagctcgcat aaccatacac
721 cctatggcgg catggtggcg tgtctgttat gagccaacag accagcaacg cctcagttat
781 gaccaattaa aggaacttga gaatgaaccg tggccctatg catccgtaac gaacaattgt
841 tacgagtttt gctgccgcgt catgtccttg gatgactcct ggttgcaacg aaagttggtg
901 acatctggta gattcaatca tcccacccag gaatggtcta aggaaacacc tgatttccat
961 caggattcaa aattggaaat agtgagagac gcaatactat ccgccataaa cggcctggtc
1021 tctcaacctt ttaagaacat cctctcaaaa attaaaccac taaatttgtt gtctttgttg
1081 tcaaactgtg actggacttt tatgggggtc gtcgagttag tagtgctact ggctgaattg
1141 tttgacatct tctggacccc acctgatatc tctaatttca tagcatctct cctacctgac
1201 ttccacctgc aagggccaga ggatttggca agagacctaa tcccattaat attggggggc
1261 atcggcctgg ctattggttt cactagagac aagattacga aggtcatgaa gagtgccgtt
1321 gatggtctgc gctcagccac gcagcttgga caatatggcc ttgaagtgtt ctcgattata
1381 aagaagtatt tctttggtgg tgatcaaact gagaagactc tcaagggcat agagaatgca
1441 gtcatagaca tggaagtcct gtcgagtacc aatgttacac aattggtgcg cgacaagaaa
1501 ttggctaaaa catacatgaa tatcctggat aatgaagagg aaaaggcaag aaaactttca
1561 gtgcgcagtg ctgacccaca tgttgtgaca acagtcaaca atctcatttc gcgcatatcc
1621 atggcgcgat cggcccttgc caaggctcaa gctgagatga ctaatcgggc acgccccgtg
1681 gtcataatga tgtgtgggcc accaggtata ggaaaaacca aagctgctga acacctggcc
1741 aatcgcctgg ctggtgagat aaggccagga ggaaaagtgg gcttagtgcc tagagaatcc
1801 attgaccatt gggatggcta ccatggggaa gaagtcctgt tgtgggatga ctacggcatg
1861 tccaagataa cagaggactg caataaatta caagccatag ctgacactgc cccactcaca
1921 ctcaactgtg acagaataga gaacaagggt atgcaatttg tgtcagatgc aataataata
1981 acaacaaatg cccccggacc agcccccgtc gactttgtta accttggtcc agtatgtcga
2041 cgtgtagact tcctggtata ctgctccgcc cccgaaattg aacagaccag gagaacccac
2101 cctggggaca ccaatgctat caagaatttg ttcaaaccag atttttccca tttaaaaatg
2161 gagatagcac cacaaggggg gtttgacaat caaggtaaca ccccctttgg gaagggtact
2221 atgaaatcaa ccacactcaa taggttactc atacaggcag ttgctttgac aatggagaga
2281 caagatgaat tccagatgca gggggcagtg tataactttg atgaggaccg ggtcacagct
2341 ttcactagcc tagcccgggc caacggatta ggacttttga gtatggctgc actcggtaag
2401 aagttgcgga gtgtcaacaa tatggaagga ctccgcaacg ctcttaaagg gtacaagatc
2461 actccatgtg acattgtgtg gaacaacagg acctacacca ttaaggctga tggatcaaat
2521 gtgagcgtca cagaaaagca ggcagctgcc actatccagc aacaagccac cagctcagtt
2581 actctggcac tttctaggtt acgcgccgcg cgagcgttgg cgtatgcatc atgtttccag
2641 agcgcagtga ccaccatctt gcaaatggct gggtctgcag tggtgatcag cagggcagtc
2701 aaacgcatgt tcgggaccca taccaaccag ccaaccctag agggcaaacc cagagaacat
2761 aactgcaggg ttcaccgagc cgaaagggaa ggtcgtggcc ctattggtca tgatggcatc
2821 atagaacggt acggcctgtg tgagactgac caagaagaag aagagaagat cgagatggaa
2881 gtgccaactg cagacaaaga gggcaagaat aaaggcaaga acaagaaggg gcgaggtagg
2941 aaaaataact acaacgcctt ctctaggcga ggcctaagtg atgaggagta tgaagagtac
3001 aagaaggtca gagaagaaaa gggtggtaat tacagcatcc aagaatacct cgaggaccgc
3061 caacgatatg aagaagagtt ggctgaggtc caagcaggtg gagatggcgg gatcggcgag
3121 acagaggcag agatccgcca tcgtgttttc tacaaatcca agagtggcat acgaaaacaa
3181 cgccaagagg agcgccggca gcttgggcta atcacaggta ctgaaatcag aaagcgcaag
3241 cccatagatt ggacaccacc caagaatgac tggtcagaag acaccagaca ggtcaattat
3301 gatgaacaca ttagctttga agccccacct tctatttgga gtagagtggt caaatttggc
3361 agtggatggg gcttttgggt gagttcaaca gtcttcatca caaccacaca cgtcatacca
3421 ccagatgcta aagaagtttt tggggaaaga ctttcagata tagcaataca cagagttggg
3481 gagttcacac aatttaggtt ctccaagaaa atgagacctg atcttagtgg tatggtcctt
3541 gaggagggtt gccctgaggg aacggtgtgc accataatgg tgaagagaga ttcaggtgag
3601 ctgttgcctc tggctgtgcg catgggagct gttgcgtcca tgaagataca aggcaagctc
3661 atgcatggtc agtcaggtat gttgctaacc ggtgcaaatg caaagggaat ggacctgggt
3721 accatccctg gtgactgtgg ggctccatat gtgcataaga ggggaaatga ctgggtagtg
3781 tgtggagtgc acgcagccgc aaccaagtcg ggcaacaccg tagtgtgcgc aatacagtca
3841 ggtgaaggtg aagctaccct tgaagggggt ggacaaaaca aaggacatta tgcaggccac
3901 ccaatcctaa ggtatggcaa tgggccctct ctctccacaa aaaccaaatt ctggaaatca
3961 accccccaac cactcccgcc tggaacctat gaaccagctt atctaggtgg gcgtgacccc
4021 agggtggatg gtggtccatc actccaacaa gtcctacgtg accaactcaa gccttttgct
4081 gagccccgtg gtaggctgcc agaaccgagt ttgctcgaag cagccgtgga gactgttaca
4141 aatgttttgg aacaaaccat ggacacacct gtgccttgga gttacaatga cgcctgcatg
4201 tctcttgaca agaccaccag ctcaggttac ccgcaccata aacgcaagaa tgatgattgg
4261 aatggcaatg cgtttgtgcg tgaacttggg gaacaggcgg ctcatgccaa taacatgtat
4321 gaattgggta agtcagtcaa gccagtttac acagcagcac ttaaagatga attggtgaaa
4381 cctgaaaagg tgtatacaaa aattaagaag agactgcttt ggggtgcgga ccttggcaca
4441 gtcattcggg ccgctcgagc cttcggccca ttctgtgagg cgataaaacc acatgtgata
4501 aaattgccga ttaaagttgg catgaatgca attgaagatg gccccctcat atacgctgaa
4561 catgcaaagt acaaatatca ctttgatgca gattacacag cctgggactc aactcagaat
4621 agagagatca tgctggaatc cttcaacatt atgtgcaagc tcacagccaa tccatcactg
4681 gctgctgttg tggcacagga cctactgtct ccatcagaga tggatgtggg ggattatgtg
4741 atcagcgtta aggatggcct cccctcaggg ttcccatgca cctcacaagt gaacagtata
4801 aaccattgga tttacaccct atgtgcccta tcagaggtca cgggcctggc ccctgatgtt
4861 ctgcaatccc agtcttactt ttccttctat ggggatgatg agatagtgtc aactgatgtt
4921 gaatttgacc caataaagct cacccaagtg cttagagagt atggtttgaa gcccacccga
4981 cctgacaaat cagaagggcc catcatagtg aaacaacaga tagatgggct ggtcttcctc
5041 agacgcacca tatcaaaaga cgctgctggt taccaggggc gtttagaccg caactccatt
5101 gaaaggcaac tgtggtggac tcggggacca aaccatgacg acccctttga gactctgata
5161 ccccatcaac aaaggaagat tcagttgata tccctgcttg gtgaggctgc actccatgga
5221 gagaaatttt acaggaagat agccaatagg gtgatacagg aagttaagga gggagggctt
5281 gagctctaca taccaggttg gcaggccatg tttcgctgga tgcgatttca tgacctgagc
5341 atgtggacag gagatcgcaa tctactgcct gattatgtaa atgatgatgg cgtctaagga
5401 cgccccctca aacatggatg gcaccagtgg tgccggtcag ctggttccag aggttaacac
5461 agctgaacct ctaccccttg aaccggtggt gggcgctgca acagcggcgg ccactgctgg
5521 acaggttaat ttaatagacc cctggatcat gaataacttt gtccaagccc ctgaaggcga
5581 gttcactatt tcacccaaca acacccccgg agatatttta tttgatttgc gtctggggcc
5641 acaccttaac cccttcctcc aacatttgtc ccagatgtat aatggttggg ttgggaacat
5701 gagaattagg gtcatgcttg cagggaatgc gttctctgct ggtaagatca taatttgttg
5761 tgtcccacct ggctttgaat cccagaacat atcaattgga caagccacta tgttccccca
5821 tgtcatagct gatgtgagag ttctggagcc catagagatc ccccttgatg atgtgcgcaa
5881 tgtcctgtac catacaaatg agaaccgccc aaccatgcga ctgctctgca tgttgtacac
5941 acctctccgt gctggaggag cttcatcagg cacagatcct tttgtcattg ctggccgtgt
6001 gttaacttgc cctgcccctg actttaattt tctgtttctt gtgcccccta gtgtagaaca
6061 gaagactagg caattgacta tacccaatat acccttgaac aatttggcta actccagagt
6121 gcctgcaatg ataaacaaga tggcggtctc tgctgatcag agtcaggtgg tccagtttca
6181 aaatggccgt tgcacacttg aaggacaact cttgggcaca acccctgttt cagctaacca
6241 agttgcccgc atacgtggca aagtcttctc caccaactcc gggacgggac ttaatttaac
6301 tgaaacagat gggaccccct accatgcatt tgagagcccg gcccctctcg gttttcctga
6361 cataggtgat tgtgattggc atgtgtatgc ttttaaggtg aatcaaaaca caggggatcc
6421 catgtataga ttggacataa cacaagggaa ctcatttgcg ccgcatcttg gctccatcga
6481 atttacttct gatcagcacc catcaggaga tcaattaggc acacttactt ggatctcccc
6541 tctcaacaac gcctccaggg ttgatccctg gaaaattcca tcatatggtt caacattgac
6601 tgaatccact aacctggcac cacccatctt tccaccaggc tttggtgagg ccatagtcta
6661 cttcatgtca gatttcccta ttgtgtcagg caacactacc caaatcccct gtaccctgcc
6721 ccaagagttc atctcatcct ttgtggagca acaggcacca atccgaggtg aggctgctct
6781 actgcattat gtggacccag atacccatcg caatctggga gaattcaaac tgtaccctga
6841 tgggttcatc acttgtgtgc caaacacggg tggcggcccc caaaacctcc cttcaaatgg
6901 tgtttttatc ttttcttctt gggtctctag gtattatcaa ttgaagcctg tgggaacagc
6961 cggtccggct aggcggcttg gtgtgagaag gatataatgg ctcaagctat tataggagct
7021 attgccgcca ccgctgctgg cagcgcagtg ggggcaggaa tccaagctgg aactgaggca
7081 gccttgcaat accaaaggtt tcaacaagac ctcaccctgc aggagaattc ttttaaacat
7141 gatgaaagga tgttgggttt acaaattgag gggtctaatg ttttgctaca aaagaacctt
7201 tctactcgct ataatctttt agttggtgca ggtctttcgt cagctgatgc cgcaaggtcc
7261 attgctgggg ccccagtgac aaaaatcgtg gactggaatg gggtgagaat tgctgcccct
7321 gcatccactg ccaccactct ccgctctggc aacttcatga gcataccagt tacacctaaa
7381 aaggagcccc aaaaactgcc agcacgttct gtgggcctct ccaatcctaa ttatgattca
7441 tccactatga tttctaggac aactcaatgg gtggaatcgc aaaattcaat caggaatttg
7501 tcacctttcc atagctctgc tttgaggact acttgggtaa ccccccctgg ttctacttct
7561 acttcaactt tttctactgt ttcgtcggcg ccacgatatt ttaacaccga gcgccttcct
7621 ttgttcgcaa acaacaggaa atag
//