Typing tool
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Typing tool
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Complete norovirus genomes
| MW661284 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6731
ORF3: 6731..7510
LOCUS MW661284 7570 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH19-145, complete genome.
ACCESSION MW661284
VERSION MW661284.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7570)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7570)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7570
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH19-145"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: British Columbia"
/collection_date="2019"
/note="Viral RNA extracted from fecal samples;
genotype: GII.6_GII.P7"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58471.1"
/translation="MKMASNDASAALGSQNSVNDSTNTTPSNKEEAGAFSNIKVGFKK
MLGAVPKGAKAPSSDQHCPIIKIGPKTLTVPPEPPNGEDTVQFDAKSETVIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPHYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRKSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKIEDHTSQTANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEK
EVAQDRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKRVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6731
/gene="ORF2"
CDS 5079..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58472.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIVFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSIDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGSQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6731..7510
/gene="ORF3"
CDS 6731..7510
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58473.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPRSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGASRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccctt ggcagtcaaa actctgtcaa
61 tgacagtacc aacaccaccc cttcaaacaa agaagaggct ggtgcattct ccaacatcaa
121 agttggattt aagaaaatgc tgggtgccgt acctaagggc gctaaggctc ccagcagtga
181 tcagcactgt ccaataatta agatcggacc caaaacatta acagtccccc ctgaaccccc
241 aaatggtgaa gacactgtgc agtttgatgc aaaatcggaa actgtaattg ggctaccaga
301 cttgacaaca gtgcaaaatg aacatgaaaa caccccatac actgtccctc cactgagtga
361 gagggaacac agaccagcca ctgagccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattctac cactactccg tgtacgtcag cggcggcaaa gctctggggg ttcacaaacc
481 tccggcggct ataagcctcg cgacgataga gctcaccccc atatccctat actggaggcc
541 tgtttacacc cctcactacc tggtctgccc agacacactg aaaggtctcg ctggtgagaa
601 gttcccctac acggccttca gcaacaattg ctacaacttc tgctgctggg tgcttgagct
661 caatgacacg tggcttagca gaaaaagcat ttccagaacc accggcttct ttaaaccgta
721 ccagtcttgg aacaggaaac ctcttccgac cgttgatgat ggaaaaatca aaaaggtggc
781 caacgcgatc ctttgtgcac tcggttcgct gttctcaaaa ccaatcaagg acctgctagg
841 caagctcaag ccattgaact tattacatct gctcgcgtcg tgtgattgga cgtttgcagg
901 tatagtggag acagtcatct taatggcaga actcttcaat gtcttttgga ccccgccaga
961 cgtctccaat ttcatagcct ccctgatagg tgattttgaa ttgcaggggc ctgaggactt
1021 agcagtagag cttgttcctg tagtcatggg tggcatagga atggttctcg gcttcacagc
1081 tgagaagata ggtcgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gtaaagactt
1141 agggaactat gcccttgaca tactcaaatt ggtcatgaaa tggttctttc caaagaaaga
1201 ggagaaagcc gagatggaga ccttgagggc gattgaggat gccgtcctag atatggaggc
1261 cataggtaac aaccacctca cgactctcct caaggataaa gacagtctca cggccttcat
1321 gaaaaccttg gatctggaag aagagaaagc aaggaagcta tccaccaaat catcctcacc
1381 ggacatcgtc ggcactatca atgccatact ggctaggata gctgccgcca gatccctcct
1441 gcacaaagct aaagaagaga tgttcagcag gatcagacca gtggttgtta tgatctcagg
1501 cagacctggc attggtaaaa cccatatggc gagacacttg gctaagaaca tcgccaacac
1561 catgagtggt gaccagagag ttgggctcgt tccgcgcaat ggggttgacc actgggacgc
1621 ttacagagga gagagggtgg tcttgtggga cgattatgga atggggaacc ctgtcaagga
1681 tgctttaaca ctgcaagagc tagctgacac atgcccagtc actctaaact gtgacaggat
1741 cgagaacaag ggaaaaatgt tcgatagtga tgtcatcata atcacgacca acctagtcaa
1801 tcctgcacct ctcgactacg tgaacttcga ggcgtgctct agaagaattg atttcttggt
1861 ctatgcagag tcaccagaga ttgagaaggt taaaagagat ttccctggtc agcctgacat
1921 gtggaaagat tacttcaaac aagacttttc ccatataaag ctaactctag ctcctcaagg
1981 cgggtttgac aagaatggta acaccccgca cggcaagggc accatgcgct ccctcaccca
2041 ggggtccctg accgcaaggg ttgcaggcct cgtccatgaa aggaaggatg agttccaact
2101 acaagggaat gacctccaga catacaactt tgacaccaac agggtctctg cgttcaggaa
2161 actagccgca gacaacaagt atggaattat ggagacaatg agagtaggtg cagcgctcaa
2221 aaatgtcaaa actttggaag atctgaaagt cgccttgagg gatgtaaagt tcaatgagtg
2281 tgaaataatt tacaggaact ctaagtaccg ggtctcttcc aacggcaagg gctctgtttc
2341 tgttgacaaa attgaggacc acacgtcaca gaccgcaaat gaagtgggct cagcactcct
2401 caggcttaga caagcaaggg ctagatatta tgtcagctgc ttccaagacc tcgtttacac
2461 tctcatacag gttgctgggg cgtcattcgt tgtcaacagg atctccaaaa ggttctgttg
2521 ggaaaggtgg gttaaaccaa ccgaaaccca agaagcgagt gagcccgaaa aggaagtggc
2581 tcaagacaga tgggagatag agcccaagga cacagaacca gagggcaaga agggcaagaa
2641 caagaagggg agaggcaaga aacacacagc cttctccagt aaaggcctaa gtgatgaaga
2701 gtatgatgag ttcaagagaa tcagagaaga gaggaacgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct actatgaaga agtggcagtc gcccgagcaa cagaggagga
2821 cttttgtgaa gaagaggaag ccaagataag acaaagaatt ttccgcccaa cgagaaagca
2881 aagaaaggag gaaagggggg tacttggctt agtaactggc tcagacatca ggaagaggag
2941 accagatgat tttcagccaa aaggtaacct atgggcagat gacactagga gtgtggacta
3001 caatgagaga cttgactttg aggctccacc aagcgtctgg tcaagaatag tcccattggg
3061 cactggttgg ggcttctggg tctcatcaaa ccttctgatc acaacaacac atgtcctgcc
3121 caagggggtc aaggaactct ttggggtcga agtcaagcaa attcaaatcc acaagtcagg
3181 agagttctgc aggtttagat tcccaagacc aatcaggcca gatgtcacag gactcgtgtt
3241 ggaggaaggt gctcctgagg gtaccgtctg ttccatactc gttaagaggc ccacaggtga
3301 gatgatcccc ctagcagtga ggatgggcac gcatgcatcc atgaaaatac agggtaggac
3361 cgtcggcggt cagatgggaa tgcttctcac aggagcaaat gcaaagaaca tggatcttgg
3421 caccggtcct ggtgactgcg gttgtcctta catctacaag cgtggcaacg acatagttgt
3481 cgcgggtgtt cacaccgcag cagcccgggg gggcaacact gtcatctgtg ccacccaagg
3541 gcaagatgga gaggcagtcc ttgagggaaa tgaaaacctt ggtacctatt gtggtgctcc
3601 aattctgggc cccggcaaag cgcctaagct cagcacgaaa accaaatttt ggcgctcatc
3661 accagatgcc ctacctcctg gcacgtatga acctgcctac ctggggggta aggatcccag
3721 agttgaaaag gggccctccc tacagcaagt tatgagagac cagctgaaac catttacaga
3781 gcccaggggc aaaccaccta gaccagcagt tttagaggag gctaagaaga cagtgatgaa
3841 tgttctggaa cagaccattg accctgccaa accatggact tattcacaag catgtgcttc
3901 actagacaag accacttcta gtggaagccc tcaccatgtc aggaaaaatg accattggaa
3961 tggggagtct tttaccggtc ccctggcgga ccaagcatcc aaagccaacc tcatgtatga
4021 acaggcaaag cacgtgcagc ccgtgtacac ggccgcgctt aaagatgagc ttgttaagac
4081 tgataagatc tacaagaaga taaagaagag acttctgtgg gggtcagacc ttggcacgat
4141 gatcaggtgt gccagggctt ttggcggcct tatggacagt atgaaggcaa gttgcatagc
4201 ccttccatgc agggtgggga tgaacatgaa tgaggatggc cccatcatat ttgacaaaca
4261 ctccaagtat aggtaccact atgatgctga ctactctagg tgggactcaa cccagcaaag
4321 gagcattctt tctgccgcca tggaggtgat ggtaaggttc tctgctgaac cagaattggc
4381 acaagtggtc gcagaggacc ttttggcgcc tagccagcta gatgttggcg attttgtcat
4441 ctcagtccag gagggcctgc catcaggagt cccatgtacg tcacaatgga attcaatagc
4501 gcactggatc ctaactctga gcgcaatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagcccac tcctgttttt cattttatgg cgacgatgag atcgtcagca ctgacatcaa
4621 ccttgacccc atgaaattga cacaaaaact cagggagtat ggtctggtcc ccacccggcc
4681 tgataagact gaaggccccc tcgttataac tgaagaccta accggcttga ctttcctgcg
4741 caggtcgata gcacgggacc cagctggatg gtttggaaag ttggatcaag actcaatcct
4801 caggcaattg tactggacaa ggggacccaa tcatgagaat ccatacgaga gcatggttcc
4861 ccactcccag cgagctactc agctcatggc cctccttggt gaagcttcac tgcatggtcc
4921 ccagttttac aagagagtca gcaagatggt catcaatgag attaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt taggtggatg agattttctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc aaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggtcatgg
5161 cacttgaacc ggtggtggga gcatcaattg cagctcctgt tgtcggtcag cagaatataa
5221 ttgacccctg gattagagaa aattttgttc aagcaccaca gggcgagttt actgtctcac
5281 caaggaactc gcccggtgag atgctcctaa atcttgaatt gggcccagaa cttaacccct
5341 atttaagtca tttgtcccgc atgtacaatg ggtatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggga agatcgtctt tgccgctgtg ccaccacatt
5461 tccctgtgga caatattagt gcagcccaga taaccatgtg cccccatgtg attgttgatg
5521 tgagacagct tgaaccagtg cttctacccc tccccgatat aaggaacagg ttcttccatt
5581 acaaccagga aaatacaccc cggatgagac tcgtggccat gctctacacg cctctaaggg
5641 ctaattccgg agaggatgtg ttcactgtgt cctgcagagt tctgactcgc cccgctccag
5701 attttgaatt cacattttta gttccaccaa ctgttgaatc aaaaacaaaa ccctttactc
5761 tacctattct aacccttggt gagttgtcca attcccgttt tcctgctgct atagatatgc
5821 tttatactga tcccaatgaa tcaatagttg tacagcctca aaatggtaga tgcacccttg
5881 atggtacgtt gcaaggcact acacaattgg tcccgacaca gatttgtgct tttagaggta
5941 ccctgatcag ccagactgcg agagcggccg attcaataga ctcccctcag agagcccgtg
6001 atcacccgtt gcatgtccag gttaagaatc tagatggcac acagtatgac ccaacagatg
6061 acatccctgc agtcctgggg gccattgact tcaaaggcac agtgttcgga gtggcaagtc
6121 agagggacgt ctctgggagt caagaacagg gccactatgc cacccgagct catgaagcac
6181 acattgacac aactgaccca aagtatgcac ctaaattagg cacaattctc atcaaatctg
6241 aatctactga tttcaccaca aatcagccca ttagattcac tccagtgggt atgggtgaca
6301 acaattggag acagtgggaa ttgcctgact actctggcag attgacccta aatatgaacc
6361 tcgcccctgc tgtttcccca tccttccccg gtgaacgaat ccttttcttt aggtctatag
6421 taccatcagc tggaggctac gggtctggct atatagactg tctcataccc caggaatggg
6481 tgcaacattt ctaccaggag gcagcacctt cacagtctgc tgttgcactg gttaggtatg
6541 tcaaccctga cactgggcgc aatatctttg aggccaagtt gcacagagaa gggttcctta
6601 ctgtggccaa ttctggaaac aaccctattg tggttccccc taatggttat tttagatttg
6661 aggcttgggt taatcaattc tacacacttg cccccatggg atctggacag gggcgtagaa
6721 gagcgcagta atggctggcg ccttcttcgc agggttagca ggtgatgtcg tgtcgaacgg
6781 catcggttcc ctcattaatg caggtgctaa tgcagttaat caaaaggttg agtatgattt
6841 taataagcaa cttcagatgg catcatttaa acatgataag gagatgttac aatcacaggt
6901 gttggcaacc aaacaactgc agcaggaaat gatgaacata aagcagggga tgttgaccgc
6961 tggcggcttt tcccccgcgg acgctgctag aggggctgtt aacgctccaa tgacaaaaat
7021 attggactgg aatggtacaa gatattgggc acctaatagt atgaaaacca caagctattc
7081 aggacaattc tctagcagcc ccgttcatag atctcctgct cccctccagc acactgcccc
7141 accaagaagt aagttgcaaa gtgattctgc tagtgtgtat agttcccctt ctactgtttc
7201 ttcacaatca actcattcaa cagttttgtc tgcaggaact ggggcgtcca gatccacccc
7261 cacgtccaca gcaacctcca ccctgtctag gaccagcgat tgggtcagag gacagaatga
7321 gaggcttagc ccgttcatgg atggtgctct ccaaactact tttgtcacac caccatcgag
7381 caaagcttca tcaaatggga cagtctcgac cgtgcccaaa gctgttttgg actcctggac
7441 tcctatgttt aacacacata ggcagcctct cttcgcccat ctgcgtaggc gaggggagtc
7501 acaaatttag tgaaaagagt gattaggttt tctttccctc tttccttttt ccttttctct
7561 cttttaaaaa
//