Typing tool
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Typing tool
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Complete norovirus genomes
| MW661283 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 4..5103
ORF2: 5084..6706
ORF3: 6706..7506
LOCUS MW661283 7577 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH19-137 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION MW661283
VERSION MW661283.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7577)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7577)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7577
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH19-137"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: British Columbia"
/collection_date="2019"
/note="Viral RNA extracted from fecal samples;
genotype: GII.4_Sydney_2012_GII.P16"
gene 4..5103
/gene="ORF1"
CDS 4..5103
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58468.1"
/translation="MKMASNDASAAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDKSQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ
PDVVNTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMARVELTPLSLYWRVVYTPQYLIPPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI
GKIKPLNVLNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAR
EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVK
TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEE
APKSEDDEFIISSKDIREEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERTTLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFW
NGETFTSKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL
STMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK
EYGLKPTRPDKTEGPLIISEELNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide 4..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2628
/gene="ORF1"
/product="p22"
mat_peptide 2629..3027
/gene="ORF1"
/product="VPg"
mat_peptide 3028..3570
/gene="ORF1"
/product="Pro"
mat_peptide 3571..5100
/gene="ORF1"
/product="RdRp"
gene 5084..6706
/gene="ORF2"
CDS 5084..6706
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58469.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFMGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRSTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6706..7506
/gene="ORF3"
CDS 6706..7506
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58470.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRTRDVVPARGPPSKSSNS
STATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNISF
VTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgcttcc gctgccgttg cttgcaacaa caacaacgac
61 aaggaaaaat cttcaggtga aggcttattc acaaatatgt cttccacctt aaagaaagcc
121 ctcggggcta ggcctaaaca gcctgccccg agagacaaat cacaaaagcc cccaagacca
181 ccaactcccg agttggtcaa gaggataccc cctcctccac ctaatggcga agaagaagaa
241 gaaccagtca ttaggtatga ggttaagagt gggatctctg gcctgcccga gctcacaaca
301 gtcccccaac cggacgtggt taacacagca ttcagcgttc caccattgag cttgagagaa
361 aacagggagg ccaaggaacc gctaacaggg gcaatattag agatgtggga tggagagata
421 taccactacg gcctatacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca
481 gccataagca tggcaagagt agagctgacg ccgctgtcat tgtactggcg tgtagtgtac
541 actccacaat acctcatccc ccctgaaact ctcaggaggc tcaacggaga ggcattccct
601 tacaccgcct ttgacaacaa ctgctatgcc ttttgctgct gggtgttaga cctcaatgac
661 tcatggctta gcaggaggat ggtgcaaagg acaacgggct tcttcagacc ttaccaagag
721 tggaacagaa aacccctgcc caccatggat gactccaaaa tcaagaaggt agcaaatata
781 ttcctatgtt cattgtccac attattcacc aggcccataa aagacctcat aggaaaaatc
841 aaaccattaa acgtattgaa tatcctggca acgtgtgact ggacgtttgc cggaatagtg
901 gagtctctga tattacttgc tgaactcttc ggagttttct ggacaccccc agatgtgtct
961 gctatgatcg ctcccttact cggggactac gagttgcaag ggccagaaga cctcgccgtt
1021 gaactcgtgc ctgtggtaat gggagggatt ggtttggtgt tgggattcac caaagagaaa
1081 attggcaaaa tgttgtcctc agcagcatca acactcaggg cttgcaaaga tcttggtgcc
1141 tatggcttag agatactcaa attggtcatg aagtggttct tcccgaagaa agaggaggcc
1201 aatgagctag ccatggtgag ggctatagag gatgctgtac tagatcttga ggcaatagaa
1261 aataaccaca tgacaaccct gttgaaagac aaagacagct tagcaacata catgaaaaca
1321 ctggacatgg aggaggagaa agccagaagg ttgtccacaa aatctgcatc ccctgacata
1381 gttgggacaa tcaacgccct gctggctcga atagcagcgg ccaggtcatt agtccacagg
1441 gccaaggaag agctatctag caggatgaga ccagtagttg ttatgatatc tggcaaacca
1501 ggaataggaa aaactcatct ggccagggag gtggcgagaa aggtggcatc cactctcaca
1561 ggggaccaaa gagttggact cataccaaga aacggtgtcg accattggga tgcatacaaa
1621 ggtgagagag tcgtgctgtg ggacgactat ggcatgagta accccattca tgatgctctt
1681 cgcatacaag agttggctga tacgtgcccc cttaccttaa attgtgacag aattgaaaat
1741 aagggaaaag tttttgacag tgaagtcata ataattacaa caaaccttgc caatccagcc
1801 ccacttgatt atgtcaactt tgaggcctgt tccaggagga ttgatttcct ggtgtacgct
1861 gaggcaccag aagtagaaaa ggcaaaacgg gacttccctg gtcagccaga tatgtggaag
1921 gacgccttca agtcggactt ttcacacatc aagctacagc ttgcaccaca gggcggcttt
1981 gacaagaatg gcaacacccc acatgggaaa ggagtgatga agaccctcac caccggttct
2041 ctgattgccc gtgcatcagg cctactgcac gagaggatgg atgaatttga actccaaggt
2101 cccacaatca ccaccttcaa cttcgaccgg aatagaatca cagcattcag acaattggct
2161 gcagaaaaca agtatggatt ggtggatacc atgaaagttg gcaatcaact aaaaggagtg
2221 aaaaccatgg aagaactcaa acaagcaatc aggaatgtga ccattaagag gtgccggatc
2281 atctacggtg gttccacgta tgaccttgaa tctgatggca agggcaaagt tctggtggaa
2341 aaggtcaaga acacctctgt acagaccaac aacgagttgg ccggggccct gcaccatctc
2401 aaacacgccc gaatcaggta ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcata
2461 caaattgccg gcgctgcgtt tgtcaccacg cgcattgcac gccgcatgaa catacaagaa
2521 ctctggtcga agccacaatt agatcaaaat gaatcagaga ctaaggaaga ggcccccaag
2581 tcagaagatg acgagttcat catatcttct aaggacatca gggaagaagg aaagaagggc
2641 aaaaacaaaa ctggccgtgg caagaaacac actgcattct ccagcaaggg cttgagcgat
2701 gaggagtatg acgagtacaa gagaataaga gaagagagaa atgggaagta ctctatagag
2761 gagtatcttc aagacagaga caggtactat gaggagctcg ccattgccaa agccacggaa
2821 gaagacttct gtgaggagga ggagatcaaa atccgtcaaa gaattttccg tcccaccagg
2881 aaacaacgaa aggaagagag gaccacatta gggctagtaa cgggttcaga aatcagaaaa
2941 agaaaccctg atgacttcaa acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt
3001 gactacaatg agaaactgga ctttgaggcc cctccaagca tatggtctag gattgtgagc
3061 tttggttctg gctggggctt ctgggtatca ccaagcctgt ttataacatc aactcatgta
3121 atccccgcag gcataacaga agcatttgga gtctccatca aacaaattca gatccacaaa
3181 tcaggtgaat tttgccgatt cagattccca aaaccaatta gaccagatgt gacaggaatg
3241 atcttggaag aaggtgcgcc tgagggcacc gtggcaactg tgctcatcaa acgccccacc
3301 ggagagctca tgcctcttgc agctagaatg ggaactcacg caaccatgaa aattcaaggc
3361 cgcatggttg gcggacagat gggtatgttg ctcactggat caaatgctaa aggaatggat
3421 ttaggaacaa ctcctggtga ctgtggctgt ccttacatct ataaaagggg caatgactat
3481 atagtcattg gggtgcacac tgcagcagct cgtggtggaa acaccgtcat ctgcgccaca
3541 cagggaagtg agggtgaggc aactcttgaa ggtggagatg acaaaggaac atactgtggg
3601 gcacccattc taggtcctgg gggtgcacca aaattgagca ccaaaaccaa attttggagg
3661 tcatcgaaca cgccccttcc gccagggaca tatgagcctg cctacctcgg tggccgtgat
3721 ccgcgtgtta agggtgggcc ctccttgcag caggtaatga gagaccagtt aaagccattc
3781 actgaaccca ggggcaaacc tccaagacca agtgtattgg aagcagccaa acaaaccatc
3841 atcaatgtcc tcgaacaaac cctggaccct ccacaaaaat ggacatacgc acaggcgtgt
3901 gcctcacttg acaaaaccac ctccagcggg catccccatc acgttcgaaa gaatgaattc
3961 tggaatggtg agaccttcac tagtaaattg gcagaccaag catcaaaagc aaacctaatg
4021 tttgaggaag ggaaacacat gacaccagtg tatacagcag cactcaagga cgagctagtc
4081 aagactgaga aaatctatgg aaagatcaaa aagagactgc tctggggctc tgacttgtcc
4141 accatgatcc ggtgcgctag gtcatttggt gggctcatgg acgagatgaa ggcacactgc
4201 atatcactcc cagtccgagt cggcatgaat atgaatgaag atggcccaat aatatttgag
4261 aaacattcca gatacaaata tcactatgat gcagactact ctcgttggga ttcaacacaa
4321 cagagggcag tactagcagc agccttggaa atcatggtca gattctctgc agaaccacaa
4381 ttggcacaaa tagtcgctga ggatctgcta gcccccagcg tggtagatgt gggagacttt
4441 aaaataacaa taaatgaagg gctcccctct ggtgtgccat gtacttctca atggaactcc
4501 atcgcacatt ggctgctaac tctatgtgcc ttgtctgaag tcaccaaact gtcccctgac
4561 attatacagg caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgac
4621 ataaaattgg accctgaaca gctaaccgct aaattgaagg agtacggcct gaaaccaacc
4681 cgcccagaca aaaccgaggg acccctgatc atcagtgaag aattgaacgg actcactttc
4741 ctccggagga cggtgactcg tgacccagct ggctggtttg gaaaactgga ccaaagctca
4801 attttgaggc agatgtactg gactagagga ccaaaccacg aagaccccaa tgagacgatg
4861 ataccccatt ctcaaagacc catacagctc atggcactgc ttggtgaagc ctctcttcac
4921 ggaccctctt tttacagcaa aatcagcaaa ttggtcataa ctgagctcaa agaaggtggg
4981 atggactttt acgtgccaag gcaggaaccc atgtttaggt ggatgaggtt ttctgacttg
5041 agcacgtggg agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgag
5101 tgacgccaac ccatctgatg ggtccgcagc caacctcgta ccagaggtca acaatgaggt
5161 tatggctttg gagcctgttg ttggtgccgc tatcgcggca cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaagtaattt tgtacaagcc cctggtggag agttcacagt
5281 gtcccctaga aacgctccag gtgaaatact atggagcgcg cccctaggcc ctgacctaaa
5341 tccctaccta tcccatttgg ccagaatgta taatggttat gcaggtggtt ttgaagtgca
5401 ggtaatcctc gcggggaacg cgttcaccgc cgggaagatc atatttgcag cagtcccacc
5461 aaattttcca actgaaggct taagtcctag ccaggtcact atgttccccc atataatagt
5521 agatgttaga caattagaac ctgtgctgat tcccttaccc gatgttagga ataatttcta
5581 tcactataat caatcaaatg actccactat taagttgata gcaatgttgt atacaccact
5641 tagggctaac aatgctgggg acgatgtctt cacagtttcg tgccgagttc tcacgaggcc
5701 atcccccgac tttgatttca tattcttagt gccacccaca gttgagtcaa gaactaaacc
5761 attctctgtc ccagtcttaa ctgttgagga gatgaccaat tcaagatttc ccattccttt
5821 ggaaaagttg ttcacgggcc ccagcagtgc ctttgttgtt caaccacaaa acggcaggtg
5881 cacaactgat ggcgtgcttc taggcaccac acaactgtct cctgtcaaca tctgcacctt
5941 cagaggggat gtcacccaca tcacaggtag tcacaactac acgatgaatt tggcttccca
6001 aaattggaac aattatgacc caacagaaga aatcccagcc cctctaggaa ctccagattt
6061 tatggggaag attcaaggca tgctcaccca aactacaagg acagatggtt caacgcgcgg
6121 ccacaaagct acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca
6181 atttgaaact gacacaaacc atgattttga agccaaccaa aacacaaagt tcaccccagt
6241 cggtgtcatc caagatggta gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc
6301 aagttactca ggcagaagca ctcacaatgt acatctggcc cccgctgtag ctcccacctt
6361 tccgggtgaa caacttctct tctttagatc caccatgccc ggatgcagcg ggtaccccaa
6421 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc
6481 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagagtttt
6541 gtttgaatgt aagctccaca aatcaggcta tgttacagtg gctcatactg gccaacatga
6601 tttggttatc ccccccaatg gttattttag atttgattcc tgggtcaacc aattctacac
6661 acttgccccc atgggaaatg gaacggggcg tagacgtgta gtataatggc tggagctttc
6721 tttgctggat tggcatctga tgtcctcggc tctggacttg gttcccttat caatgctggg
6781 gctggggcta tcaatcaaaa agttgagttt gaaaacaaca gaaaattgca acaagcatcc
6841 ttccaattta gcagcaatct gcaacaggct tcctttcaac atgacaaaga gatgctccaa
6901 gcacaaattg aggccaccaa aaagttacaa caggaaatga tgagggttaa gcaggcaatg
6961 ctcctagagg gtgggttctc tgagacagat gcagcccgcg gggcaattaa cgcccccatg
7021 acaaaagctc tagactggag cgggacaagg tactgggctc ccgatgctag gactacaaca
7081 tacaatgcag gccgcttttc cacccctcaa tcatcggggg cactgccagg aagaactagg
7141 gatgttgttc ctgctcgggg accccccagt aaatcttcta actcttctac tgccacctct
7201 gtgtactcaa atcaaactgc ttcaacgaga cttggttcta cagctggttc tggaaccagt
7261 gtttcgagcc tcccgtcgac tgcaaggact aggagctggg ttgaggacca aagtaggaat
7321 ttgtcacctt tcatgagggg ggcccacaac atatcatttg tcaccccacc atctagtagg
7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc ctggactggc
7441 gctttcaaca cgcgcaggca gcctctcttc gctcacattc gtaggcgagg ggagtcacgg
7501 gtgtaatgtg aaaagacaaa attgattatc ttttcttttc tttagtgtct tttaaaaaaa
7561 aaaaaaaaaa aaaaaaa
//