Typing tool
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Typing tool
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Complete norovirus genomes
| MW661276 | GII.3 | |
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| GII.P12 |
ORF1: 1..5088
ORF2: 5069..6715
ORF3: 6715..7479
LOCUS MW661276 7545 bp RNA linear VRL 28-SEP-2021
DEFINITION Norovirus GII isolate BMH19-120 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION MW661276
VERSION MW661276.1
DBLINK BioProject: PRJNA396739
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7545)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Genomic Analysis of Human Noroviruses Using Hybrid
Illumina-Nanopore Data
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7545)
AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and
Weedmark,K.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada,
251 SIR FREDERICK BANTING, Ottawa ON, Canada
COMMENT ##Assembly-Data-START##
Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23
Sequencing Technology :: Illumina; Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7545
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BMH19-120"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Canada: British Columbia"
/collection_date="2019"
/note="Viral RNA extracted from fecal samples;
genotype: GII.3_GII.P12"
gene <1..5088
/gene="ORF1"
CDS <1..5088
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="QSD58447.1"
/translation="SNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARHKQPP
PRETSQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELITVRQPDEVNT
AFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCR
RMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPL
NILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKAKRD
FPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMPELR
QALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQ
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPDDFKPKGKLWADDDRSVDYNERLSFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRP
PKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMI
RCARAFGGLMEELKAHCITLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEITNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..978
/gene="ORF1"
/product="p48"
mat_peptide 979..2076
/gene="ORF1"
/product="NTPase"
mat_peptide 2077..2613
/gene="ORF1"
/product="p22"
mat_peptide 2614..3012
/gene="ORF1"
/product="VPg"
mat_peptide 3013..3555
/gene="ORF1"
/product="Pro"
mat_peptide 3556..5085
/gene="ORF1"
/product="RdRp"
gene 5069..6715
/gene="ORF2"
CDS 5069..6715
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="QSD58448.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTVA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6715..7479
/gene="ORF3"
CDS 6715..7479
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="QSD58449.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSEPTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tctaacgacg cttccgctgc cgctgctgct aacagcaaca acgacaacgc aaaatcttca
61 agtgatggag tgctttctag catggctgtc acttttaaac gagccctcgg ggcgcggcat
121 aaacagcccc ccccgaggga aacatcacaa aggcctccac gaccacccac cccagaactg
181 gtcaaaaaga tccctcctcc cccacccaac ggggaggacg agctagtggt ctcttacagc
241 gccaaagatg gcgtttctgg tttgcctgaa cttatcactg tccggcaacc ggatgaggtc
301 aacacggcat tcagtgttcc ccctctcaac cagagggaga acagggacgc caaggagccg
361 ctgaccggaa caatcctgga aatgtgggac ggggagatct atcattacgg tctgtatgtg
421 gagcgaggtc ttgtacttgg tgtgcacaaa ccaccagctg ccatcagcct cgccaaggtt
481 gaactggcac cactctctct attttggagg ccagtgtaca caccacagta cctcatctct
541 ccagatactc ttaggagact gcatggagag tcgttcccct atacagcttt tgacaacaac
601 tgctatgcct tctgttgttg ggttctggac ctaaacgact cgtggttgtg caggagaatg
661 attcagagaa caactggctt cttcagacct taccaagagt ggaacaggaa accccttccc
721 accatggatg actctaaatt gaaaaaggta gccaacatat tcttgtgtgc gctatcttcg
781 ttatttacta ggcccattaa agacataata ggaaaggtga gaccgctcaa catcctcaac
841 atcctggcct catgtgattg gacttttgca ggcatagtgg aatctttgat cctcttggca
901 gagctctttg gagttttctg gacaccccca gatgtgtctg cgatgatcgc ccccttacta
961 ggtgactacg agctgcaggg gcctgaggac cttgcagtgg aactcgtacc agtagtgatg
1021 ggagggattg gtttggtgtt aggattcacc aaagagaaga tcggaaaaat gttgtcatct
1081 gctgcttcca ccttaagagc ttgtaaagac cttggtgcat acgggctgga aatcctaaaa
1141 ttggtcatga aatggttctt cccaaagaaa gaggaagcaa atgagctagc tatggtgagg
1201 tccatcgagg atgcggtgct ggaccttgaa gcaattgaga acaaccatat gactgccctc
1261 ctcaaagaca aagacagcct ggcaacctac atgaggaccc ttgacctcga ggaggagaaa
1321 gccaggaagc tttcaaccaa gtctgcttca cctgacatcg tgggcacaat caacgctctt
1381 ctggcgagaa tcgccgctgc acgttccctg gtgcatcggg cgaaagagga actctccagc
1441 aggccaagac ctgttgttgt tatgatatca ggtaggccag ggatagggaa aactcacctt
1501 gccagggagc tagctaagaa gatcgcagct tcgctcacag gggaccagcg cgtgggcctc
1561 atcccccgca atggcgtcga ccattgggat gcatacaagg gagaaagagt cgtactatgg
1621 gacgattatg gaatgagtaa tcccatccac gatgccctca ggttacagga acttgctgac
1681 acctgccccc tcacgctaaa ctgtgacagg attgagaaca aaggaaaggt ctttgacagt
1741 gatgccataa tcatcaccac taatctagcc aacccagcac cattggacta tgtcaacttt
1801 gaagcatgct cgaggcgcat tgacttcctc gtgtacgcag atgcccctga ggtcgagaaa
1861 gcaaagcgtg acttcccagg ccaacctgac atgtggaaga acgcatttag ttctgacttc
1921 tcgcacataa aactggcact ggctccgcaa ggtggtttcg acaagaacgg aaacacccca
1981 cacgggaaag gcgttatgaa aactctcacc actggttccc tcatcgcccg agcatcaggg
2041 ctactccatg agaggttaga tgagtacgag ctgcagggcc caactcccac caccttcaat
2101 tttgaccgca acaaggtgct tgcgttcaga caacttgctg ccgaaaacaa gtacggattg
2161 ttggacacaa tgagagttgg aaaacagctc aaggatgtta agaccatgcc agagctcaga
2221 caggcactca aaaatgtcgc aatcaagagt tgtcagatag tgtatggtgg ctgcacctac
2281 aggcttgagt ctgatggcaa gggtgatgta aaagttgaca gagttcagaa cgctactgta
2341 cagaccaaca atgagcttgc cggcgcacta caccatctta ggtgcgccag aatcagatat
2401 tatgtcaagt gtgttcagga ggccctgtat tccatcatcc aaattgctgg ggccgcattt
2461 gtcaccacgc gcattgtcaa gcgcatgaac atacaagatc tttggtccaa gccacaggtg
2521 gaggacacag aggaaatcgc tagcaaggat ggatgcccaa aaccccagga tgatgaagag
2581 ttcgttgtct catccgatga catcaaaacc gagggcaaga aagggaaaaa caagtctggc
2641 cgtggcaaga agcacacagc attctcaagt aaaggtctca gtgatgaaga gtacgatgag
2701 tacaaaagaa tcagagaaga aagaaatggc aaatactcca tagaggaata cctccaggac
2761 agagacaggt attatgagga agtggccatc gccagggcaa ccgaagagga cttctgtgaa
2821 gaagaagagg ccaagatccg acagaggatc ttcaggccaa caagaaaaca acgcaaagag
2881 gagagagcct ctctcggctt ggtcacaggt tctgaaatca ggaagaggaa cccagacgac
2941 ttcaagccta aaggaaagct gtgggctgat gatgacagga gtgttgacta caatgagaga
3001 ctcagttttg aagccccacc aagcatctgg tcaaggatag tcaactttgg ttcaggttgg
3061 ggcttttggg tttcccccag cctgttcata acatcaactc atgtcatacc ccagggcgca
3121 caggaattct ttggtgtatc catcaaacaa attcagatac acaaatcagg tgaattctgc
3181 cgcttgaggt ttccaaagcc gatcagaact gacgtgacag gcatgatctt agaggaaggt
3241 gcacccgaag gaaccgtggt cacattactc atcaaaagac caactggaga gctcatgccc
3301 ctggcagcca gaatgggaac ccacgcaacc atgaagatac aagggcgcac tgttggaggt
3361 caaatgggca tgctcctaac aggatccaac gccaagagca tggacctggg taccacacca
3421 ggtgactgtg gctgccccta catttacaag agggggaatg actacgtggt cattggggtc
3481 cacacagccg ccgcccgcgg aggaaacact gtcatttgtg ccacccaggg gagcgaggga
3541 gaagccacac ttgaaggcgg tgatagcaag gggacctact gcggtgcacc aatcttaggt
3601 ccaggaagtg ccccaaaact cagcaccaag accaagttct ggaggtcatc cacggcacca
3661 ctcccacctg gtacctatga accagcttac ctcggcggca aggatcccag agtcaagggt
3721 ggcccttcac tgcaacaagt catgagggat caactgaaac cattcactga gcctaggggt
3781 aggccgccaa aaccaagtgt gctagaggct gccaagaaaa ccatcgtcaa tgtccttgaa
3841 cagacaattg acccacctca aaaatggtcg tttgcgcagg catgcgcatc ccttgataag
3901 accacttcta gcggtcatcc gcaccatatg cggaagaacg actgctggaa cggggagtcc
3961 ttcacaggaa aattggcaga ccaggcttcc aaggccaacc tgatgtttga ggagggaaag
4021 aacatgaccc cagtttacac gggtgcgctt aaggacgagc tggtcaagac cgacaagatt
4081 tatggtaaga tcaaaaagag gcttctctgg ggttcggacc tggcgaccat gattcggtgc
4141 gctcgagcat tcgggggtct gatggaggaa ctcaaagcac attgtatcac actacctgtt
4201 agggtgggta tgaatatgaa tgaagatggc cctatcatct ttgagagaca ctccagatat
4261 aaatatcatt atgatgctga ctactcccgg tgggattcaa cacaacaaag agccgtgttg
4321 gcagcagcct tagaaattat ggtcaagttt tccccagagc cgcacctggc ccaaaaggtt
4381 gcagaagacc tcctttctcc cagcgtgatg gacgtaggtg atttcaagat atcaatcaat
4441 gagggtctcc cctccggagt gccctgcacc tcccaatgga actccatcgc ccactggctc
4501 ctcaccctct gtgcactctc cgaaattaca aacctgtccc ctgatatcat tcaggccaac
4561 tctctctttt ctttctacgg tgatgatgaa attgtgagta cagatataaa attagaccca
4621 gaaaaactaa cagcaaaact taaggaatac gggttgaaac cgacccgccc tgacaagact
4681 gaagggcctc ttgtcatttc cgaagacctg aatggcctaa ccttcctgcg gaggaccgtg
4741 acccgtgacc cagcaggctg gtttggaaag ttggaacaga gctcaatact cagacaaatg
4801 tactggacta ggggccccaa ccatgaagac ccatctgaaa caatgatacc acactcccag
4861 aggcccatac aattgatgtc tttgttaggt gaggcagcac tccacggccc agcattctac
4921 agcaaaatca gcaaactggt cattgcagag ttgaaggaag gtggcatgga tttttacgtg
4981 ccaagacaag agccaatgtt cagatggatg agattctcgg atctgagcac gtgggagggc
5041 gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccactccatc
5101 taatgatggt gccgccggcc tcgtcccaga gatcaacaat gaggcaatgg cgctagagcc
5161 agtggcgggt gcagcgatag cagcacccct cactggccag caaaatataa ttgatccctg
5221 gattatgaat aattttgtgc aagcacctgg tggtgagttc acagtgtctc ctaggaattc
5281 ccctggtgaa gtgctcctca atttggaatt gggcccagag ataaacccct atctggccca
5341 tcttgctaga atgtataatg gttatgcagg tgggtttgaa gtgcaggtag tcctagctgg
5401 aaatgcgttt acagcaggaa agataatctt tgcagctata ccccctaact tcccaattga
5461 caatctaagt gcagcacaga tcacaatgtg cccacatgtg atcgtggatg tcaggcagtt
5521 ggaaccggtc aacctcccga tgcctgacgt tcgcaataac ttcttccact acaaccaagg
5581 gtctgattcg agattgcgct tggttgcaat gctgtacaca cctcttaggg caaataactc
5641 tggggatgat gttttcactg tgtcttgtag agtgttgact agacctagcc ctgacttttc
5701 atttaatttc cttgtgccac ccactgtgga gtcaaagaca aaacccttca ccctcccaat
5761 tctgactatt tctgagatgt ctaactctag gtttccagtg ccgattgatt ccctgcacac
5821 cagcccaact gagaatattg ttgtccagtg ccaaaacgga cgcgtcactc ttgatggtga
5881 gttgatgggc accactcagc tcttacctag tcaaatctgt gctttcaggg gcgtgctcac
5941 tagatcaaca agcagggcta gtgaccaggc cgacacagca acccctagat tgtttaatta
6001 ttattggcac atacaattgg ataatctaaa tgggactcct tatgatcctg cagaagacat
6061 accaggcccc ctggggacac cagattttcg gggcaaagtc ttcggcgtgg ccagccaaag
6121 aaaccccgac agtacaacta gagcacatga agcaaaggtg gacacaacag ctggtcgctt
6181 caccccaaaa ctaggctcat tagagatatc cactgaatct ggagactttg accaaaatca
6241 accaacaaga tttaccccgg ttggcattgg ggttgaccac gaggcagact tccaacaatg
6301 gtccttaccc gactactctg gccagttcac tcacaacatg aacttagccc cagctgttgc
6361 ccccaacttc cctggtgagc agctcctttt cttccgctca cagttaccat cttctggtgg
6421 gcgatccaat gggattctag actgcctggt cccccaagaa tgggttcagc acttctacca
6481 agaatcagcc cccgcccaaa cccaggtggc tctagttaga tatgtcaacc ctgacactgg
6541 tagagtgttg tttgaggcaa agcttcacaa attaggcttc atgactgtag ctaagaatgg
6601 tgactcccca ataactgtcc ccccaaatgg atactttagg tttgaatctt gggtgaaccc
6661 attttataca cttgccccca tgggaactgg gaatgggcgt agaagagttc aataatggct
6721 ggagctttta tagcaggatt ggctggtgat atattcacaa atactgtagg gtctctagtt
6781 aatgcagggg caaatgctat caatcaaaaa gttgattttg aaaataataa atatttgcaa
6841 aatgcttctt tcaatcatga taaggaaatg ttaaatgcac agattgaggc aacaaagagg
6901 ttacaagctg acatgattgc tatcaaacag ggggttttga ccgctggcgg cttttccccc
6961 actgatgcag ctcgcggggc aattaatgcc cccatgacaa aagtcctaga ttggaatgga
7021 acaaggtact gggcaccgag tgccacatcc acaacctcga tgtcgggtgg cttcacaaac
7081 caggctgtgc acagaaccac accaaatttt aaaatgaacc aggcccccaa atccacaccc
7141 agcagtgggt cttcagtgag gtcactctca acccaagtca ctagtctgag ctcacactcg
7201 tccgggtcgt ctcgatccag cgagcctaca gttgctagct cattaccatc ctctaacagg
7261 actagggatt gggtcaatca gcaaaatttc aatttggaac cacacatgcc tgggtcactt
7321 aggacggctt ttgtcactcc accatctagt acagcctcta gttcaggcac tgtctcaacc
7381 gtgcccaaaa atgttttgga ctcctggaca tctgcgttta acacgcgcag acagccgcta
7441 ttcgcacacc ttcgtagaag gggggagtca aatgtttagt gaaaaggtta ttttaaattt
7501 gatttaaatt agatttgatt tggaatcttt taaaaaaaaa aaaaa
//