Typing tool
|
Complete norovirus genomes
MW661274 | GII.6 | ||
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GII.P7 |
ORF1: 5..5098 ORF2: 5079..6722 ORF3: 6722..7501LOCUS MW661274 7550 bp RNA linear VRL 28-SEP-2021 DEFINITION Norovirus GII isolate BMH19-118, complete genome. ACCESSION MW661274 VERSION MW661274.1 DBLINK BioProject: PRJNA396739 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and Weedmark,K. TITLE Genomic Analysis of Human Noroviruses Using Hybrid Illumina-Nanopore Data JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Nasheri,N., Flint,A., Reaume,S., Harlow,J., Hoover,E. and Weedmark,K. TITLE Direct Submission JOURNAL Submitted (23-FEB-2021) Bureau of Microbial Hazards, Health Canada, 251 SIR FREDERICK BANTING, Ottawa ON, Canada COMMENT ##Assembly-Data-START## Assembly Method :: Medaka v. v1.1.3; Pilon v. v1.23 Sequencing Technology :: Illumina; Nanopore ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="BMH19-118" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Canada: British Columbia" /collection_date="2019" /note="Viral RNA extracted from fecal samples; genotype: GII.6_GII.P7" gene 5..5098 /gene="ORF1" CDS 5..5098 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="QSD58441.1" /translation="MKMASNDASAAFGSQNSVNDSTNTAPSNKEEVGALSNIKVGFKK ILGAVPKGTKAPSSDQHCPTVKIGTKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP EIEKVKKDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS VKTLEDLKVALRDVKFNECEIIYRNSRYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK EVAQGKWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERGGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGIKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGAYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCITLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2623 /gene="ORF1" /product="p22" mat_peptide 2624..3022 /gene="ORF1" /product="VPg" mat_peptide 3023..3565 /gene="ORF1" /product="Pro" mat_peptide 3566..5095 /gene="ORF1" /product="RdRp" gene 5079..6722 /gene="ORF2" CDS 5079..6722 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="QSD58442.1" /translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGIVVQPQNGRCTLDGTLQGTTQ LVPTQICAFRGTLIGQTSRSSDSTDSAPRRRDHPLHVQLKNLDGTQYDPTDEVPAVLG AIDFKGTVFGVASQRDVSGQQVGATRAHEVHINTTDPRYTPKLGSILMHSESDDFVTG QPVRFTPIGMGDNDWHQWELPDYSGHLTLNMNLAPAVAPAFPGERILFFRSIVPSAGG YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ" gene 6722..7501 /gene="ORF3" CDS 6722..7501 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="QSD58443.1" /translation="MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMA SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNG TRYWAPNSMKTTSYSGQFSSSPVHKSPAPPQHVVSSKSRLQNDSASVYSSPSSVSSQS THSTVLSAGTGSSRSISTSTATPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSK ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccttt ggcagccaaa actctgtcaa 61 tgacagtacc aacaccgccc cttccaacaa agaagaggtt ggtgcgttat ccaacatcaa 121 agttggtttt aagaaaatac tgggtgctgt tcccaaagga actaaagcac ccagtagtga 181 tcagcactgc cccacagtca agatcgggac caagacatta acagttcccc ctgagccccc 241 aaatggtgaa gacaccgtac agtttgatgc gaagtcggaa accgtgcgtg ggctaccaga 301 cttgacaacg gtgcaaaatg aacacgaaaa cacaccatat actgtccccc cattgagtga 361 aagggagcac agaccagcca ccgagccgct tcctggcaca atattggaga tgtgggatgg 421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctggggg ttcacaagcc 481 ccctgcagcg ataagcctcg cgacgataga gctcacaccc atatctcttt attggaggcc 541 cgtttacacc cccaactacc tggtctgtcc agacacgttg aaaggcctcg ctggtgagaa 601 gttcccctac acggccttca gcaacaattg ttacaacttc tgttgctggg tgcttgagct 661 caatgacacg tggcttagca ggagaagcat ctccaggacc accggcttct tcaaaccata 721 tcagtcttgg aataggaaac ccctcccaac cgttgatgat ggaaagatca aaaaggtggc 781 caacgcaatt ctctgcgctc ttgggtcatt gttttcaaaa ccaatcaagg acctattggg 841 caaacttaaa ccattgaact tgctgcacct actcgcatca tgtgattgga cgtttgcggg 901 tatagtagag acagtcatcc taatggcgga acttttcaac atcttttgga caccgccaga 961 tgtttccagc ttcatagcat ccctaatagg tgattttgaa ctgcaagggc ctgaggacct 1021 ggctgtggag cttgtccccg tggtcatggg tggcatagga atggttctcg gctttactgc 1081 cgagaagata ggccgcatgc tgtcgtcagc tgcatcaacg ctgcgggcat gcaaagactt 1141 ggggaattat gcccttgaca tattgaaact ggttatgaag tggttcttcc caaagaagga 1201 agagaaagcc gagatggaga ccctaagggc gattgaggat gccgtcctag acatggaagc 1261 tataggaaac aaccatctca caaccctcct caaggacaag gatagcctca cggctttcat 1321 gaaaactctg gatctagaag aggagaaggc aaggaagctg tccaccaaat catcctcgcc 1381 agacatcgtc ggcactatta atgccatact ggccaggata gctgccgcca ggtccctctt 1441 acacaaggcc aaagaagaaa tgtttagtag gatcagacct gtggttgtca tgatctcggg 1501 cagacctggc attggcaaaa cccacatggc aagacacttg gctaagagta tcgccaacac 1561 catgagcggt gaccagagag tagggctcgt cccacgcaac ggagtcgatc actgggacgc 1621 ctacagggga gagagggtgg tcttatggga tgattatggc atgggaaacc ctgtcaaaga 1681 tgccttgaca ctgcaagaac tggctgacac ctgcccagta actctaaact gtgatagaat 1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacgacta atttagtcaa 1801 cccagcgccc ctcgattatg tgaacttcga ggcgtgctct agacgggtcg actttttggt 1861 ctatgcggag tcaccagaaa ttgagaaggt taagaaagat ttccccggcc aacctgacat 1921 gtggaaagac cattttaagc cagacttttc ccacataaaa ctgactctag ccccacaggg 1981 tggatttgac aagaatggca acaccccgca tggtaagggc accatgcgat ccctgaccca 2041 ggggtccctg actgcaaggg tcgcaggtct tgttcatgag aggagagacg agtttcagct 2101 ccaggggaat gaccttcaaa catacaactt cgacaccaac agggtctctg catttaggaa 2161 gctggccgca gacaacaagt acgggatcat ggagacgatg agagtgggca cagcgcttaa 2221 gagtgtcaag accctggaag acctgaaagt tgccctgagg gatgtgaaat tcaatgagtg 2281 tgagataatt tacaggaact ccagatatcg agtctcttcc aatggtaaag gctctgtctc 2341 tgttgataaa gtcgaggacc aaacatccca gactgcaaac gaagtgggcg cagcactcct 2401 caggcttagg caggcaagag ccagatacta tgtcagctgc ttccaagatc ttgtctacac 2461 cctaatacag gtcgccggag catcattcgt tgtcaacagg atctctaaga ggttctgctg 2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaagtagc 2581 ccaaggcaaa tgggagattg aacccaaaga cacagaacca gaaggtaaga agggtaagaa 2641 caagaaagga agaggcaaga agcacacagc tttctccagc aaaggcctta gtgatgagga 2701 gtatgacgag tttaagagaa ttagagaaga aaggggcgga aaatactcca ttgaggaata 2761 cctgcaagac cgggatcgct actatgagga agtggcagtt gcccgggcga cagaggagga 2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgtccca caaagaaaca 2881 gaggaaggaa gaaagggggg tgcttggttt ggtcactggc tcagacatca ggaagaggag 2941 accagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggatta 3001 caacgagagg cttgatttcg aagctccccc gagtgtctgg tctagaatag tcccattggg 3061 tactggctgg ggcttctggg tctcatccaa cctcctgatc acaacaacac acgtcctgcc 3121 caaggggatt aaggaacttt ttggagttga agtcaaacag atccaaattc ataagtctgg 3181 agagttctgc aggttcagat tcccaagacc aatcagacca gatgtcacag ggctcgtgtt 3241 agaggagggt gctccagaag gcactgtctg ctccatactc gtgaagagac caacaggtga 3301 gatgatccct ctggcagtga ggatgggcac gcatgcatcc atgaaaatac agggtagaac 3361 cgtcggtggt cagatgggaa tgcttctcac aggggcaaat gcgaagaaca tggatcttgg 3421 caccggccct ggtgactgcg gttgtcctta catctacaaa cgtggcaatg atatagttgt 3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatatgtg ccactcaagg 3541 gcaagacggg gaggcagtcc ttgagggaaa tgagaacctt ggaacttact gcggtgcccc 3601 aattttgggt ccaggcaagg cgcccaaact tagcacaaag accaagttct ggcgctcgtc 3661 accagacgct ctgccgccag gcgcttatga gcctgcctac ttgggaggca aggaccctag 3721 agtagaaaaa ggaccatccc tacagcaagt catgagagac cagctaaaac ctttcacaga 3781 acccaggggc aagccaccta gacctgcagt cttagaagaa gccaaaaaga cagtgatgaa 3841 tgttctagaa caaaccattg accctgctaa gccatggacc tactcccaag catgcgcctc 3901 actggacaag accacctcca gtggtagccc acatcatgtc aagaaaaatg accattggaa 3961 tggggaatcc tttactggcc cccttgcaga ccaagcatcc aaagccaacc tcatgtacga 4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactc aaagatgagc tagtcaagac 4081 tgacaagatc tataagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat 4141 gatcaggtgc gccagggcct ttggtggtct catggatagc atgaaggcaa gttgcataac 4201 cctcccatgt agggtgggaa tgaacatgaa tgaagatggt cccatcatat ttgacaaaca 4261 ctctaagtat aggtaccatt atgatgctga ctattccagg tgggactcaa cccagcaaag 4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgccgaac cagagctggc 4381 acaagtggtt gcagaggacc tcctggcacc cagccaacta gatgttggcg actttgtcat 4441 ctcagttcag gagggtctgc cgtcaggggt accatgcaca tcacaatgga attcaatagc 4501 acattggatc ctaactttga gtgcaatggc agaagtgtcg ggtctctcac cagatgttgt 4561 tcaagcccat tcctgtttct cattctacgg tgatgatgag atcgttagca ctgacatcaa 4621 ccttgatccc atgaagttga cacagaagct cagagagtat ggcctggtcc ctactcgacc 4681 tgacaaaact gagggtcccc ttgtaataac tgaagatctc accggcctaa cgttcctgcg 4741 taggtcaatt gcacgggatc cagctgggtg gtttggaaaa ttagaccaag actcaatcct 4801 caggcaattg tactggacaa ggggccccaa tcatgagaac ccatatgaga gcatggtccc 4861 tcattcccag cgggccacac agcttatggc ccttctcggt gaggcttcac tgcatggccc 4921 ccagttttac aagaaggtca gcaagatggt cattaacgaa atcaaaagtg gtggtctgga 4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac 5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg 5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg 5161 cacttgagcc ggtggtgggg gcttcaatcg cagctcctgt cgtcggccaa caaaacataa 5221 ttgacccctg gattagagaa aattttgttc aagcaccaca gggtgagttc accgtctcgc 5281 cgaggaactc gcctggtgag atgctattaa atcttgaatt aggcccagaa ctcaaccctt 5341 acctaagtca cctgtcccgt atgtataatg ggtatgctgg tggcatgcag gttcaggtgg 5401 tcctagctgg gaatgcgttc acagctggga aaatcatctt tgccgctgtg ccaccacatt 5461 tccccgtgga aaacatcagt gcagctcaaa taactatgtg cccccatgtg attgttgatg 5521 tgagacaact tgagccagta ctcctacccc ttcctgacat aaggaatagg ttctttcatt 5581 acaatcagga gaacactccc cggatgagac ttgtggccat gctttacacc cccctgaggg 5641 ccaactctgg tgaagatgtg tttactgtct cttgtagggt cttaacccgt cctgcccctg 5701 attttgaatt tactttcttg gtaccgccaa ctgttgaatc aaagactaaa ccttttacat 5761 tacccatatt aactcttggt gagctatcta attccagatt cccagcccca atagatatgt 5821 tgtacactga tccaaatgag ggaattgtgg tccaaccaca aaatggtagg tgcactcttg 5881 atggcacttt gcaaggcacc acacaactgg tccccaccca aatttgtgct ttcaggggca 5941 cactaattgg ccaaacatca agatcttcag actcaaccga ctcagcccct cggaggaggg 6001 atcacccact ccatgtgcaa ttaaagaacc ttgatggcac gcagtatgac cctactgatg 6061 aagtgccagc agtcctcggt gccattgatt ttaaggggac tgtttttggg gtggccagtc 6121 agagggacgt gtcaggacaa caggtgggag caactcgagc ccatgaagtg cacatcaaca 6181 caaccgatcc taggtataca ccaaaactag ggtccattct catgcactca gagtcggatg 6241 acttcgtgac tggacagccg gtccgcttca cacccatagg aatgggcgac aacgactggc 6301 accagtggga gctgcccgac tattctggac acctaaccct aaacatgaac cttgccccag 6361 cagttgctcc tgcattcccg ggtgagagga ttcttttctt cagatcaatt gtcccgtctg 6421 ctggtggcta cggctctggg caaatagatt gcctcatacc acaggagtgg gttcagcatt 6481 tctaccaaga agctgcacca tcccaatctg ccgtggcact catcaggtat gtcaaccctg 6541 acacaggcag aaacatcttt gaggctaaat tgcataggga aggtttcatc accgtggcta 6601 attctggcaa caaccccatt gttgtccccc ctaatgggta ttttaggttt gaggcttggg 6661 tgaatcaatt ttacactttg acccccatgg gaactggtca ggggcgtagg aggaatcaat 6721 aatggccagt gcttttcttg caggtcttgc tggtgacgtc ataacaaatg gcgttggatc 6781 tctaataaat gctggtgcta atgcagttaa tcagaaagtt gaatatgatt ttaataaaca 6841 gcttcaaatg gcatcattta aacatgataa agagatgttg caatcacaag tgttggcaac 6901 caagcagttg cagcaggaga tgatgaacat taggcagggg gtgttgaccg ctggcggctt 6961 ctcccccgcg gatgctgcta gaggggctgt caatgcccca atgacaaaga ttctggattg 7021 gaatggcacc aggtattggg caccaaacag catgaaaacc acaagttatt caggacagtt 7081 ttctagcagc cccgttcata agtctcctgc tcctccccag catgttgttt catcaaagag 7141 tagattgcaa aatgattctg ctagtgtata tagttctcct tcttctgttt cttcacaatc 7201 aacccattca acagtgctgt cagcaggaac tgggtcctcc aggtccatct ccacatctac 7261 agctaccccc accttgtcta ggaccagcga ctgggttagg ggacagaatg agaggcttag 7321 cccgttcatg gatggtgctc tccaaaccgc ctttgtcaca cctccatcga gcaaagcttc 7381 ttcaaatggt acggtctcaa ccgttcccaa agctgttttg gactcctgga cccctatgtt 7441 taacacacat aggcagcctc tcttcgccca tttacgcagg cgaggggagt cacaagttta 7501 gtgaaaagag tgatcaggtt ttctcccttt ttcttttctc tcttttaaaa //